Gcaud1764.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1764.t1
Unique NameGcaud1764.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length274
Homology
BLAST of Gcaud1764.t1 vs. uniprot
Match: A0A2V3IPK1_9FLOR (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPK1_9FLOR)

HSP 1 Score: 323 bits (829), Expect = 1.620e-108
Identity = 186/268 (69.40%), Postives = 205/268 (76.49%), Query Frame = 0
Query:    1 MFAFAAPFAPCSLRRA--PIAAP--------------SLRTRLARTARHAAPRPSRAPRMSLTPXXXXXXXEALCALLLSDISTVNQNSLFATAFVFFLTFWGAISFVKGSTKARITQASFTLQQSPSDIAKKTARYLMERSFVADPEKDSRAGVMTFTGKVRASSSVASILVAVAASGLWSLTYILNFILPTQYQSPYWNLLTLLAFAVVPWYWNAASRTEEVKVMVEEEEQGSTLYVKGHRDEIEQLEKAFNWKRNAPVYEGDEQQ 252
            MFAFAA FAP  L  A  P  AP              S+R + AR         S +P MS+ P        AL  LLL+DISTVN+NSLFATAFVFFLTFWG +SFVKGSTK RITQASFTLQ+  +DIAKKTARYLM+RSFVADPEKD+R GVMTFTGKVRASSSVASILVAVAASGLWS TYILNFILP QYQSPYW  LT L+F VVPWYW  ASRTE+VKVMVEE+E  STLY+KGHRDEIE+LEKAF+WKRN PVYEG+EQ+
Sbjct:    1 MFAFAASFAPQVLSNAVRPATAPRRLHATNSHFISPLSIRRQTARNVS------STSPTMSVEPPI------ALSNLLLADISTVNRNSLFATAFVFFLTFWGGVSFVKGSTKPRITQASFTLQEPSADIAKKTARYLMQRSFVADPEKDTRKGVMTFTGKVRASSSVASILVAVAASGLWSFTYILNFILPQQYQSPYWGWLTALSFLVVPWYWKQASRTEQVKVMVEEDEGLSTLYLKGHRDEIEELEKAFSWKRNPPVYEGEEQE 256          
BLAST of Gcaud1764.t1 vs. uniprot
Match: A0A7S1ERL7_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ERL7_9RHOD)

HSP 1 Score: 173 bits (438), Expect = 2.150e-49
Identity = 92/182 (50.55%), Postives = 125/182 (68.68%), Query Frame = 0
Query:   70 NQNSLFATAFVFFLTFWGAISFVKGSTKARITQASFTLQQSPSDIAKKTARYLMERSFVADPEKDSRAGVMTFTGKVRASSSVASILVAVAASGLWSLTYILNFILPTQYQSPYWNLLTLLAFAVVPWYWNAASRTEEVKVMVEEE---EQG-STLYVKGHRDEIEQLEKAFNWKRNAPVYE 247
            N  SL  T  VFFLTFWG ISFVKGSTKARI Q ++++Q  P+D+A++TA + + RSF  + E D R GV+TF G V  S+++A++LV   A GL  L  IL+ +LP QYQSP W  +  L+  V PWYWN A R E+VK+M+EE    E+G +T+++KGHRDE+ + E+A  +KRN P  E
Sbjct:   88 NTQSLGITGLVFFLTFWGLISFVKGSTKARIEQRNYSVQGDPADLARRTAAHFLGRSFAINREADKRPGVVTFEGMVAPSTALAALLVFCLAIGLSGLVIILDLVLPEQYQSPLWWNIVWLSGLVAPWYWNGAKRVEQVKLMIEENSETEKGMNTIFIKGHRDELLEFEQALGYKRNEPAEE 269          
BLAST of Gcaud1764.t1 vs. uniprot
Match: A0A7S1XHM9_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XHM9_9RHOD)

HSP 1 Score: 162 bits (410), Expect = 4.590e-45
Identity = 89/176 (50.57%), Postives = 116/176 (65.91%), Query Frame = 0
Query:   70 NQNSLFATAFVFFLTFWGAISFVKGSTKARITQASFTLQQSPSDIAKKTARYLMERSFVADPEKDSRAGVMTFTGKVRASSSVASILVAVAASGLWSLTYILNFILPTQYQSPYWNLLTLLAFAVVPWYWNAASRTEEVKVMVEEE---EQGSTLYVKGHRDEIEQLEKAFNWKRN 242
            N  SL  T  VFFLTFWG ISFVKG+TKARI Q ++T+ + PS IA  +A++ M RS+  + E D+R GV+TF G V  S+ +A +LV   A+GL  L  ILN +LP  Y SP W  L  L+  V PWYW  ASR E+VK+M+EE       +T+Y+KGHRDE+ + EKA  +KRN
Sbjct:  102 NTKSLGITGVVFFLTFWGLISFVKGATKARIEQRNYTVAEDPSAIAAASAKHFMGRSYRINREADTRPGVVTFEGDVAPSTFLALLLVFSLAAGLSGLVVILNTLLPESYHSPLWWNLDWLSLLVAPWYWKGASRIEQVKMMIEESFDSPSANTVYIKGHRDELMEYEKALGYKRN 277          
BLAST of Gcaud1764.t1 vs. uniprot
Match: A0A1X6NQV9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQV9_PORUM)

HSP 1 Score: 160 bits (406), Expect = 1.240e-44
Identity = 90/197 (45.69%), Postives = 124/197 (62.94%), Query Frame = 0
Query:   63 LSDISTVNQNSLFATAFVFFLTFWGAISFVKGSTKARITQASFTL--QQSPSDIAKKTARYLMERSFVADPEKDSRAGVMTFTGKVRASSSVASILVAVAASGLWSLTYILNFILPTQYQSPYWNLLTLLAFAVVPWYWNAASRTEEVKVMVEEEEQGS--------------TLYVKGHRDEIEQLEKAFNWKRNA 243
            L++++  NQ+SL  TAFVF LT WG +SF+KGS K R+TQASFTL    SP  +A+K +  L  R++VA PE D R GVMT+ G V+ S+S+A+ILV+VA +GL  +  + N +LP +Y S  W  +++L  AV PWYW  A R E+ K MV+  E G+              TL+VKGHRDE+   E+    KRN+
Sbjct:   68 LAEVTATNQSSLGVTAFVFLLTAWGGLSFIKGSVKDRLTQASFTLPTDTSPDTLARKASAILTGRAYVAKPEMDERPGVMTYEGVVKPSTSIATILVSVAVAGLAGVVLMANLVLPPEYASSKWYAVSVLGAAVGPWYWAKAERAEQFKCMVQVGEGGNEPLAGVPGVPSTGVTLFVKGHRDEVAVFERELGVKRNS 264          
BLAST of Gcaud1764.t1 vs. uniprot
Match: A0A5J4Z2N8_PORPP (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2N8_PORPP)

HSP 1 Score: 148 bits (374), Expect = 1.600e-39
Identity = 80/184 (43.48%), Postives = 118/184 (64.13%), Query Frame = 0
Query:   62 LLSDISTVNQNSLFATAFVFFLTFWGAISFVKGSTKARITQASFTLQQSPSDIAKKTARYLMERSFVADPEKDSRAGVMTFTGKVRASSSVASILVAVAASGLWSLTYILNFILPTQYQSPYWNLLTLLAFAVVPWYWNAASRTEEVKVMVEEEE---QGSTLYVKGHRDEIEQLEKAFNWKRN 242
            +L  +   N  SL  TA V+FLTFWG ISFVKGSTK RI Q +++++  P  +A+  A++   R++  + + D+R GV+TF G V  S  +A +L +  A GL SL  +LN  LP +Y+S YW  +T ++  VVPWYW  A R E+VK+++EE E   + +T+Y+KGHRDEI + E+   + RN
Sbjct:  110 MLGAVDDDNLRSLGITALVWFLTFWGLISFVKGSTKPRIEQHNYSVEGEPGAMARACAQHFASRAYKINAQADTRPGVVTFEGLVSPSYFIAGLLFSCLALGLGSLVVLLNTFLPDEYRSVYWWGITPVSALVVPWYWRGAERIEQVKLLIEEAETPGEPNTVYIKGHRDEIMEFERTLGYVRN 293          
BLAST of Gcaud1764.t1 vs. uniprot
Match: A0A8J7AEH6_9CYAN (Cofactor assembly of complex C subunit B n=2 Tax=Romeria TaxID=945765 RepID=A0A8J7AEH6_9CYAN)

HSP 1 Score: 79.7 bits (195), Expect = 1.400e-14
Identity = 55/152 (36.18%), Postives = 83/152 (54.61%), Query Frame = 0
Query:   87 GAISFVKGSTKARITQASFTLQQSPSDIAKKTARYLMERSFVADPEKDSRAGVMTFTGKVRASSSVASILVAVAASGLWSLTYILNFILPTQYQSPYWNLLTLLAFAVVPWYWNAASRTEEVKVMVEEEEQ----GSTLYVKGHRDEIEQLE 234
            G I F++ STK RI  A FT QQ+PSD+ +  A +L  R++    +  S    +T  G VR S  +A  L  +AA G   L  +L+ +  ++++  +W LL L   A + +YW  ++R EE+   V   +      S+L VKGHRDEI QL+
Sbjct:   19 GLIFFIRASTKDRIQTAQFTSQQTPSDLYQTVAHHLQSRAYRLKADATSERETVTLVGFVRPSLFLAVFLTGLAAIGWLCLALVLSTLF-SEWRGLFWGLLGLSPLAGL-FYWRRSARPEEISFRVSPADDLSSAQSSLKVKGHRDEIAQLQ 168          
BLAST of Gcaud1764.t1 vs. uniprot
Match: U9VWW4_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9VWW4_9CYAN)

HSP 1 Score: 70.9 bits (172), Expect = 1.800e-11
Identity = 51/150 (34.00%), Postives = 77/150 (51.33%), Query Frame = 0
Query:   87 GAISFVKGSTKARITQASFTLQQSPSDIAKKTARYLMERSFV---ADPEKDSRAGVMTFTGKVRASSSVASILVAVAASGLWSLTYILNFILPTQYQSPYWNLLTLLAFAVVPWYWNAASRTEEVKVMVEEEEQGSTLYVKGHRDEIEQL 233
            G   F+K +TK R   A F  +QSP  + +K   Y   R++    A P+ D     +T TG VR S  +A  L  +AA  L     +L  +  + Y + ++ L+ L   A +  YW  A R E++   +++ EQG TL V+GHRDE+ QL
Sbjct:    6 GLFFFIKAATKDRTEVAEFLTEQSPDVLHQKLLNYFQNRAYTLASATPDSDDW---ITLTGLVRPSVFLAIFLAFLAAVALMCFALVLTTLF-SGYGALFFILVLLAPVAAIA-YWKQAKREEQIAFRIDDTEQGCTLTVRGHRDELIQL 150          
BLAST of Gcaud1764.t1 vs. uniprot
Match: UPI000475110E (cofactor assembly of complex C subunit B n=1 Tax=Spirulina subsalsa TaxID=54311 RepID=UPI000475110E)

HSP 1 Score: 62.8 bits (151), Expect = 2.010e-8
Identity = 55/177 (31.07%), Postives = 89/177 (50.28%), Query Frame = 0
Query:   69 VNQNSLFATAFVFFLTFWGAISFVKGSTKARITQASFTLQQSPSDIAKKTARYLMERSF-VADPEKDSRAGVMTFTGKVRASSSVASILVAVAASGLWSLTYILNFILPTQYQSPYWNLLTLLAFAVVPW-YWNAASRTEEVKVMVE---EEEQGSTLYVKGHRDEIEQLEKAFNWK 240
            +N + L +T F+  L   G   F++ S K R  Q           +  +   Y  +R++ VA  +++S+   +TF G VR S  +A  L  +A  GL     IL+++LP Q    +W L+ L    V  W YW  A R E+V + +E   E   G  + V+GHRDE+ +L++A ++K
Sbjct:    1 MNTSVLSSTFFLTLLLMIGLFFFIRASFKDRTEQVQLWSDLPEESLFTQLQCYFDQRAYRVAQVDEESQQ--VTFEGFVRPSWFLAVFLTLLAGCGLVCFALILSYLLP-QLTLLFWGLIALAP--VGGWVYWQKAGRMEQVLLKIEPSPETNPGHFVTVRGHRDELIELQRAMSFK 172          
BLAST of Gcaud1764.t1 vs. uniprot
Match: K9STQ9_9SYNE (Uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7502 TaxID=1173263 RepID=K9STQ9_9SYNE)

HSP 1 Score: 59.3 bits (142), Expect = 3.670e-7
Identity = 47/162 (29.01%), Postives = 79/162 (48.77%), Query Frame = 0
Query:   87 GAISFVKGSTKARITQASF-TLQQSPSDIAKKTARYLMERSFVADPEKDSRAGVMTFTGKVRASSSVASILVAVAASGLWSLTYILNFILPTQYQSPYW----NLLTLLAFAVVPWYWNAASRTEEVKVMVEEEEQGSTLYVKGHRDEIEQLEKAFNWKRNA 243
            G +SF++ S K R T+    ++  +   +  KT  +  +R +     +  R  V T  G+VR S  +  +LV VAA G+  L  +L  ++P  + S  W     +    A     +YWN A R EE+ + +    Q   L+VKGH+DE+ +L+++    R A
Sbjct:   21 GLLSFLRSSVKDRTTEMILKSVNFNEDQLLSKTRDHFKQRGYQVIKLEGDRETV-TLAGRVRPSIFLTLVLVVVAAIGMGCLGLVLTILVP--FFSDNWLAIAEIAVFTAIGAGLFYWNGADRIEEISLQLRPNTQ---LWVKGHKDELAELQRSLGLIREA 176          
BLAST of Gcaud1764.t1 vs. uniprot
Match: UPI0009E296E4 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E296E4)

HSP 1 Score: 57.4 bits (137), Expect = 4.400e-6
Identity = 48/183 (26.23%), Postives = 86/183 (46.99%), Query Frame = 0
Query:   67 STVNQNSLFATAFVFFLTFWGAISFVKGSTKARITQASFTLQQS-PSDIAKKTARYLMERSFVADPEKDSRAGVMTFTGKVRASSSVASILVAVAASGLWSLTYILNFILPTQYQSPYWNLLTLLAFAVVPWYWNAASRTEEVKVMVEEEEQG--STLYVKGHRDEIEQLEKAFNWKRNAPVY 246
            ++ +Q S + +  +F ++  G  S +K S K++I Q +F    S P+ +A +   +    +F      D+    +TF G +  S   A++L       L S+  +L+  +P    + +W  LT L+     +YW  ASR EE+KV +   + G  S + V+G   ++EQ+ K         VY
Sbjct:   69 ASYSQASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKNFVKGASRPNQVAGEILSFFTRNNFTVSDRGDT----ITFEGMMVPSRGQAALLTFCTCISLASVGLVLSIAVPEGGNNWFW--LTALSPLAGVYYWQRASRKEEIKVKILVGDDGKLSEIIVRGDDQQLEQMRKELQLSEKGMVY 245          
The following BLAST results are available for this feature:
BLAST of Gcaud1764.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2V3IPK1_9FLOR1.620e-10869.40Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B C... [more]
A0A7S1ERL7_9RHOD2.150e-4950.55Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S1XHM9_9RHOD4.590e-4550.57Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A1X6NQV9_PORUM1.240e-4445.69Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4Z2N8_PORPP1.600e-3943.48Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B C... [more]
A0A8J7AEH6_9CYAN1.400e-1436.18Cofactor assembly of complex C subunit B n=2 Tax=R... [more]
U9VWW4_9CYAN1.800e-1134.00Uncharacterized protein n=1 Tax=Leptolyngbya sp. H... [more]
UPI000475110E2.010e-831.07cofactor assembly of complex C subunit B n=1 Tax=S... [more]
K9STQ9_9SYNE3.670e-729.01Uncharacterized protein n=1 Tax=Synechococcus sp. ... [more]
UPI0009E296E44.400e-626.23protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B C... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021919Cofactor assembly of complex C subunit B, CCB1PFAMPF12046CCB1coord: 73..239
e-value: 2.4E-35
score: 121.4
IPR021919Cofactor assembly of complex C subunit B, CCB1PANTHERPTHR35302FAMILY NOT NAMEDcoord: 59..242
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..273
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..273
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 176..180
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 200..273
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..72
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 93..151
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..175
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 73..92
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 181..199
NoneNo IPR availableTMHMMTMhelixcoord: 73..92
NoneNo IPR availableTMHMMTMhelixcoord: 152..174
NoneNo IPR availableTMHMMTMhelixcoord: 184..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2664_length_5018_cov_3.423584contigNODE_2664_length_5018_cov_3.423584:1322..2143 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1764.t1Gcaud1764.t1Gracilaria caudata M_176_S67 malemRNANODE_2664_length_5018_cov_3.423584 1322..2143 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1764.t1 ID=Gcaud1764.t1|Name=Gcaud1764.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=274bp
MFAFAAPFAPCSLRRAPIAAPSLRTRLARTARHAAPRPSRAPRMSLTPPP
PPPPPEALCALLLSDISTVNQNSLFATAFVFFLTFWGAISFVKGSTKARI
TQASFTLQQSPSDIAKKTARYLMERSFVADPEKDSRAGVMTFTGKVRASS
SVASILVAVAASGLWSLTYILNFILPTQYQSPYWNLLTLLAFAVVPWYWN
AASRTEEVKVMVEEEEQGSTLYVKGHRDEIEQLEKAFNWKRNAPVYEGDE
QQQEQQQPQQQQAEAPNESVTSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021919CCB1