Gcaud1733.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1733.t1
Unique NameGcaud1733.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length320
Homology
BLAST of Gcaud1733.t1 vs. uniprot
Match: A0A2V3J0G5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0G5_9FLOR)

HSP 1 Score: 486 bits (1252), Expect = 3.050e-171
Identity = 241/306 (78.76%), Postives = 275/306 (89.87%), Query Frame = 0
Query:   14 HAKKDASHGAFYSGFAKGMTAAVDGIMLFARSETLQKQFWKLLKPIRNAQIAYGSAGVLLFLILRDPADDITELFWTISRWGRIVTVLTSIILEYQYGATSAMFFAALKERDPEFGAALENRPKTRKNIREKLSGFKRAAKLTMFKLAGAIIQRVFPGGKYIAVPAVKFISIRPVLGTGIAAAVSAVHAIPAEILESSRVDDVLVSFGEAVVDADEAGEDSVADYTKRLESAEMRTYFFKRYRGYIAGCGFVYSLLSAVPFLGIPLTLISECGAACLVTEIVQRNLDKEFRKPLTCEEAIQNKKES 319
            HA K+ASHGAFYSGF KGM +AV+GI LF RSE LQ QFW+L+KPIRNAQIAY SAG+LLFL+LRDPADDITELFWT+SRWGRIVTVL S ILE QY AT+ MFFAALKERDP FGAA+ENR K RK +RE+LS FKRA KLT+FKLAG ++Q++FPGGKYIAVPA+KF+SIRPVLGTG+AAA++AVHAIPAE LESSRVDDVLVSFGEA+VDADE   DSV +YTKRLE+ EMRTYFFKRYRGY+AGCGFVYSLLS++PFLGIPLTLISECGAACLVT+I QRNLDK+FR+PL CE+A+ + K S
Sbjct:   18 HATKNASHGAFYSGFLKGMASAVEGIQLFLRSEALQNQFWQLVKPIRNAQIAYASAGILLFLLLRDPADDITELFWTLSRWGRIVTVLASFILENQYSATTTMFFAALKERDPAFGAAVENREKHRKTLRERLSSFKRAGKLTLFKLAGVLVQKLFPGGKYIAVPAIKFVSIRPVLGTGVAAAIAAVHAIPAEALESSRVDDVLVSFGEAIVDADEMAGDSVVEYTKRLETPEMRTYFFKRYRGYLAGCGFVYSLLSSIPFLGIPLTLISECGAACLVTDIAQRNLDKQFRRPLICEDALGHAKTS 323          
BLAST of Gcaud1733.t1 vs. uniprot
Match: R7QLX7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLX7_CHOCR)

HSP 1 Score: 390 bits (1002), Expect = 1.510e-132
Identity = 192/304 (63.16%), Postives = 244/304 (80.26%), Query Frame = 0
Query:   16 KKDASHGAFYSGFAKGMTAAVDGIMLFARSETLQKQFWKLLKPIRNAQIAYGSAGVLLFLILRDPADDITELFWTISRWGRIVTVLTSIILEYQYGATSAMFFAALKERDPEFGAALENRPKTRKNIREKLSGFKRAAKLTMFKLAGAIIQRVFPGGKYIAVPAVKFISIRPVLGTGIAAAVSAVHAIPAEILESSRVDDVLVSFGEAVVDADEAGEDSVADYTKRLESAEMRTYFFKRYRGYIAGCGFVYSLLSAVPFLGIPLTLISECGAACLVTEIVQRNLDKEFRKPLTCEEAIQNKKES 319
            KKDASHGAFY+GF KGM +A DG++LFA S+ L++ FW LL P+RNAQIAY   GVL+FL+LRDPADD  ELFWTISRWGRIVTVLT+ +LE +Y A S MFF AL+  +P F  AL++ PKT  ++++K +  KR AKLT+FK  GAII R+FPGG+YIA+PAVKF+S+RPVLG  +AA ++++HAIP + LESSRVDD LVS GEA++DADE G D+  ++  RL+S E R YF +RYRGY+ GCGFVYSLL AVP LGIP++LI+ECGAAC+VT+IV+RNLDKE R+PL CE+ + + K S
Sbjct:   65 KKDASHGAFYAGFFKGMFSAFDGMLLFASSKQLRRVFWSLLAPMRNAQIAYVFTGVLIFLLLRDPADDAAELFWTISRWGRIVTVLTTFLLEKKYHANSIMFFEALQVLNPSFAQALKDTPKTNTSLKDKWNKVKRVAKLTLFKATGAIINRIFPGGRYIAIPAVKFVSMRPVLGAPVAAGLASIHAIPVQFLESSRVDDALVSVGEAILDADELGTDATREFHTRLDSEETRHYFAERYRGYLTGCGFVYSLLEAVPLLGIPMSLIAECGAACVVTDIVKRNLDKENRRPLVCEDKVNHDKTS 368          
The following BLAST results are available for this feature:
BLAST of Gcaud1733.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J0G5_9FLOR3.050e-17178.76Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QLX7_CHOCR1.510e-13263.16Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 78..96
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 122..256
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..58
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 257..281
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..77
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 282..319
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 97..121
NoneNo IPR availableTMHMMTMhelixcoord: 257..279

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1010_length_15078_cov_4.529993contigNODE_1010_length_15078_cov_4.529993:12896..13855 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1733.t1Gcaud1733.t1Gracilaria caudata M_176_S67 malemRNANODE_1010_length_15078_cov_4.529993 12896..13855 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1733.t1 ID=Gcaud1733.t1|Name=Gcaud1733.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=320bp
MSAGAIEANNSGAHAKKDASHGAFYSGFAKGMTAAVDGIMLFARSETLQK
QFWKLLKPIRNAQIAYGSAGVLLFLILRDPADDITELFWTISRWGRIVTV
LTSIILEYQYGATSAMFFAALKERDPEFGAALENRPKTRKNIREKLSGFK
RAAKLTMFKLAGAIIQRVFPGGKYIAVPAVKFISIRPVLGTGIAAAVSAV
HAIPAEILESSRVDDVLVSFGEAVVDADEAGEDSVADYTKRLESAEMRTY
FFKRYRGYIAGCGFVYSLLSAVPFLGIPLTLISECGAACLVTEIVQRNLD
KEFRKPLTCEEAIQNKKES*
back to top