Gcaud1712.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1712.t2
Unique Name	Gcaud1712.t2
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	459

Homology

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BLAST of Gcaud1712.t2 vs. uniprot
Match: A0A2V3IZZ8_9FLOR (Translocase of chloroplast 33, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZZ8_9FLOR)

HSP 1 Score: 323 bits (829), Expect = 3.480e-101
Identity = 186/430 (43.26%), Postives = 249/430 (57.91%), Query Frame = 0

Query:    6 RVQLWESVGELGAVAVAADAGALPLDVVLFVTRLDCSRVGKYDKRLLSQLCHLFGQRVLHSVVFVLSRGGALAPLNLTFAEFVRLRADLLYVLVKQVFHPLQVAGGVGLQHAPDVLSQHVQRHA----------------------------------------SXXXXXXXXXXXXXXPLTAAALAALERQITRQWLGRKPSPAVQKLHTCLINDDGTDAGSTSGVPPDFLDDLFHSGVYPLDRRVFVDPPRPPVVVVELAHSAPRDQHGHALLPNGQPCMPALVDVIVRTAARVRAQRQSGEHER-------REQQFAPEPLSWWRRLHREIVCGGLRTAVMCVAFVYLGVVTYAQMLERERKWKEAQDDDDVLLKLDDEEFKRLTTPDPGTDGSVILNSEPPPGEAQEXXQELKDEEKEFFGTEQGE 388
            ++ +W+S  E G VAV AD  A  +DV+LFVTRLD SRVGKYDK+ L  L  LFG+++LH +VFVL+RG AL P+NL F EFV +R+D+LY   K+VF P+QV+GGVG+++APD++ + +++ A                                                        LT A L  LE++IT+ WL  KP P+V+K+   L++D+G DA S +G+    +DD++ SGVYPLDRRVF DPPRP  VVVE+AH    ++ G  LLPN    +  LV  I +TA  VR +R++             +    P    W   L RE + G LR  +     VY+G+V Y ++ ER RKWKEAQDDD VLL+LDDEE++RLT PD GTDGSVIL S    G  +E  +ELKD EKEFFG  + E
Sbjct:   98 QLWIWDSNDENGVVAVGADQEAAQIDVLLFVTRLDASRVGKYDKKHLIVLRKLFGEQILHRIVFVLTRGSALPPINLNFNEFVGVRSDMLYAYAKEVFKPVQVSGGVGIEYAPDLIEEELRKRALIEQTDLEPISSDEAHETEETAQGNVSENGEMGTSSTAEPQHLEQPSEATNSPVQALTKADLKKLEKRITQDWLNTKPRPSVKKMFEVLLHDEGNDASSVTGMADTLIDDIYASGVYPLDRRVFTDPPRPRCVVVEMAHDCAINEAGEKLLPNKIAWIHTLVGAIAQTAKEVRRKREAQRXXXXXXXXXXEKAVSRPGRFKWLNDLRREFLRGSLRMVLTQFVLVYVGMVVYLKVEERRRKWKEAQDDDSVLLELDDEEYERLTKPDEGTDGSVILES----GPIREEEEELKDAEKEFFGVRERE 523

The following BLAST results are available for this feature:

BLAST of Gcaud1712.t2 vs. uniprot

BLAST of Gcaud1712.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IZZ8_9FLOR	3.480e-101	43.26	Translocase of chloroplast 33, chloroplastic n=1 T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 20..134 e-value: 3.8E-9 score: 38.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 344..458
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 397..411
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 417..431
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 296..315
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 316..458
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..295

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_851_length_17024_cov_4.098683	contig	NODE_851_length_17024_cov_4.098683:14812..16188 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1712.t2	Gcaud1712.t2	Gracilaria caudata M_176_S67 male	mRNA	NODE_851_length_17024_cov_4.098683 14812..16188 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1712.t2 ID=Gcaud1712.t2|Name=Gcaud1712.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=459bp
LANGARVQLWESVGELGAVAVAADAGALPLDVVLFVTRLDCSRVGKYDKR
LLSQLCHLFGQRVLHSVVFVLSRGGALAPLNLTFAEFVRLRADLLYVLVK
QVFHPLQVAGGVGLQHAPDVLSQHVQRHASHAEHAEHAEHAEHVPLTAAA
LAALERQITRQWLGRKPSPAVQKLHTCLINDDGTDAGSTSGVPPDFLDDL
FHSGVYPLDRRVFVDPPRPPVVVVELAHSAPRDQHGHALLPNGQPCMPAL
VDVIVRTAARVRAQRQSGEHERREQQFAPEPLSWWRRLHREIVCGGLRTA
VMCVAFVYLGVVTYAQMLERERKWKEAQDDDDVLLKLDDEEFKRLTTPDP
GTDGSVILNSEPPPGEAQEEEQELKDEEKEFFGTEQGEVLKEEPPQTNAE
GEQQFERQVGPEQQHTEGGDVDADWHKLSDDEAIYSQSYTPDNQHKWKHL
LPKTEQTE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase