Gcaud1641.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1641.t1
Unique Name	Gcaud1641.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	239

Homology

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BLAST of Gcaud1641.t1 vs. uniprot
Match: A0A2V3J305_9FLOR (Transcription elongation factor SPT6-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J305_9FLOR)

HSP 1 Score: 189 bits (481), Expect = 1.590e-51
Identity = 163/243 (67.08%), Postives = 180/243 (74.07%), Query Frame = 0

Query:    1 MSDNEGLFEDEAIAEEPEEQKFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAPVPHLDDSAFRDVRXXXXXXXXXHREDSPELAEGDLQLLEEGGVRIDRRKKLKRLRKGASDEEENAFVDDVRDFVDDDENMYEDRRRSTIEPVDYDDDMDDFIDXG---GRKKKKAAEREGLVSSEAVRHARSIFGDAEEMTQYKGAGKLFK--KNRDGDDEDDEDFVAEKDVGESE-RPLRRIQD 237
            MSDNEG++EDEA  EEPEE     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX LAAP+P L+++AF +V+  XXXXXXX+REDSPELAEGDLQLLEE GVRIDRRKKLKRLRK A+DEE+ AF DD RDFVD                            X    GRKKK  AEREGLVSSEAVRHARSIFGDAEEMTQYKGA KLFK  + RDGDDE+D+DF  + D G    RPLR++QD
Sbjct:    1 MSDNEGMYEDEA-REEPEEDNX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLAAPIPRLNNAAFDEVKRKXXXXXXXYREDSPELAEGDLQLLEEEGVRIDRRKKLKRLRKSAADEEDLAFNDDARDFVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKKKATAEREGLVSSEAVRHARSIFGDAEEMTQYKGAHKLFKAGQRRDGDDEEDKDFKVDDDEGAPNGRPLRKLQD 240

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BLAST of Gcaud1641.t1 vs. uniprot
Match: R7QCF9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCF9_CHOCR)

HSP 1 Score: 140 bits (354), Expect = 1.610e-34
Identity = 83/159 (52.20%), Postives = 108/159 (67.92%), Query Frame = 0

Query:   83 EDSPELAEGDLQLLEEGGVRIDRRKKLKRLRKGASDEEENAFVDD-VRDFVD--DDENMYEDRRRSTIEPVDYDDDMDDFIDXGGRKKKKAAEREGLVSSEAVRHARSIFGDAEEMTQYKGAGKLFKKNRDGDDEDDEDFVAEKDVGESERPLRRIQDR 238
            +DS ELAEGDL+LLEE GVRIDR+KKL+RLRKGA+DEE+N  +DD VR   D  +++++YE                     X       AAER+GLVSSEAVR ARSIFGD EEMTQY+G  KLF+K +DGDD++D D++ E +  +  +PLR I++R
Sbjct:   78 DDSHELAEGDLELLEEKGVRIDRKKKLRRLRKGAADEEDNFGLDDEVRGLADIEEEDDLYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAERDGLVSSEAVRQARSIFGDVEEMTQYRGVDKLFQKGQDGDDDEDADYLGEDEQQDESKPLRTIRER 236

The following BLAST results are available for this feature:

BLAST of Gcaud1641.t1 vs. uniprot

BLAST of Gcaud1641.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J305_9FLOR	1.590e-51	67.08	Transcription elongation factor SPT6-like n=1 Tax=...	[more]
R7QCF9_CHOCR	1.610e-34	52.20	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028083	Spt6 acidic, N-terminal domain	PFAM	PF14632	SPT6_acidic	coord: 24..117 e-value: 1.1E-10 score: 41.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..239
None	No IPR available	PANTHER	PTHR10145:SF6	TRANSCRIPTION ELONGATION FACTOR SPT6	coord: 18..212
IPR017072	Transcription elongation factor Spt6	PANTHER	PTHR10145	TRANSCRIPTION ELONGATION FACTOR SPT6	coord: 18..212

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_875_length_16715_cov_4.214690	contig	NODE_875_length_16715_cov_4.214690:16000..16715 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1641.t1	Gcaud1641.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_875_length_16715_cov_4.214690 16000..16715 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1641.t1 ID=Gcaud1641.t1|Name=Gcaud1641.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=239bp
MSDNEGLFEDEAIAEEPEEQKFEDSSEEEEDEDNYEKDDFIVDDEGDDIG
DDDDLAAPVPHLDDSAFRDVRRKKKKKRRRHREDSPELAEGDLQLLEEGG
VRIDRRKKLKRLRKGASDEEENAFVDDVRDFVDDDENMYEDRRRSTIEPV
DYDDDMDDFIDDGGRKKKKAAEREGLVSSEAVRHARSIFGDAEEMTQYKG
AGKLFKKNRDGDDEDDEDFVAEKDVGESERPLRRIQDRX

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR028083	Spt6_acidic_N_dom
IPR017072	TF_Spt6