Gcaud1641.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1641.t1
Unique Name	Gcaud1641.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	239

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_875_length_16715_cov_4.214690	contig	NODE_875_length_16715_cov_4.214690:16000..16715 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707364.1
PFAMs	DLD,HHH_7,HTH_44,SH2_2,SPT6_acidic,YqgF
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11292
GOs	GO:0000003,GO:0000018,GO:0000785,GO:0000988,GO:0000990,GO:0000991,GO:0002637,GO:0002682,GO:0002694,GO:0002697,GO:0002700,GO:0002703,GO:0002706,GO:0002712,GO:0002819,GO:0002822,GO:0002889,GO:0003006,GO:0003674,GO:0003682,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006325,GO:0006338,GO:0006342,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009299,GO:0009506,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010793,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0030054,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031491,GO:0031974,GO:0031981,GO:0032239,GO:0032268,GO:0032269,GO:0032386,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032879,GO:0032880,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033157,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035327,GO:0040029,GO:0042393,GO:0042789,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0043954,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045191,GO:0045595,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046822,GO:0046825,GO:0046831,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0050684,GO:0050776,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0051049,GO:0051052,GO:0051128,GO:0051129,GO:0051147,GO:0051171,GO:0051172,GO:0051173,GO:0051223,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0055044,GO:0060255,GO:0060341,GO:0061085,GO:0061086,GO:0061458,GO:0065007,GO:0070013,GO:0070201,GO:0070827,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090087,GO:0090304,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902275,GO:1902679,GO:1902680,GO:1903311,GO:1903506,GO:1903507,GO:1903508,GO:1903827,GO:1905268,GO:2000026,GO:2000112,GO:2000113,GO:2000197,GO:2001141,GO:2001251
Evalue	2.4e-09
EggNOG OGs	COG2183@1\|root,KOG1856@2759\|Eukaryota
Description	obsolete transcription factor activity, core RNA polymerase II binding
COG category	K
BRITE	ko00000,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1641	Gcaud1641	Gracilaria caudata M_176_S67 male	gene	NODE_875_length_16715_cov_4.214690 16000..16715 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1641.t1.start1	Gcaud1641.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_875_length_16715_cov_4.214690 16000..16002 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1641.t1.CDS1	Gcaud1641.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_875_length_16715_cov_4.214690 16000..16715 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1641.t1.exon1	Gcaud1641.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_875_length_16715_cov_4.214690 16000..16715 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1641.t1	Gcaud1641.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_875_length_16715_cov_4.214690 16000..16715 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_875_length_16715_cov_4.214690:16000..16715+
coding sequence from alignment at NODE_875_length_16715_cov_4.214690:16000..16715+

mRNA sequence

>Gcaud1641.t1 ID=Gcaud1641.t1|Name=Gcaud1641.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=239bp
MSDNEGLFEDEAIAEEPEEQKFEDSSEEEEDEDNYEKDDFIVDDEGDDIG
DDDDLAAPVPHLDDSAFRDVRRKKKKKRRRHREDSPELAEGDLQLLEEGG
VRIDRRKKLKRLRKGASDEEENAFVDDVRDFVDDDENMYEDRRRSTIEPV
DYDDDMDDFIDDGGRKKKKAAEREGLVSSEAVRHARSIFGDAEEMTQYKG
AGKLFKKNRDGDDEDDEDFVAEKDVGESERPLRRIQDRX

spliced messenger RNA

>Gcaud1641.t1 ID=Gcaud1641.t1|Name=Gcaud1641.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=716bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:16000..16715+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGACAACGAAGGATTGTTCGAAGACGAGGCGATAGCGGAAGAACC
AGAAGAACAAAAATTCGAGGACTCCAGTgaggaagaagaggatgaggaca
actacgagaaggacgacttcatcgtcgacgacgaaggcgacgaTATAGGA
GATGATGATGACCTAGCAGCCCCTGTCCCGCATCTTGATGACAGTGCTTT
CCGTGACGTGCGGCGAAAGAAGAAAAAGAAGCGACGCCGTCACCGCGAAG
ATTCTCCAGAACTGGCTGAGGGGGATCTGCAACTGTTAGAAGAAGGAGGT
GTGCGAATTGACAGGCGCAAAAAGCTGAAACGTCTTCGCAAAGGCGCTTC
GGACGAAGAGGAAAACGCTTTTGTGGACGACGTTAGAGACTTTGTAGATG
ACGATGAAAATATGTACGAAGATCGCAGACGCTCGACCATTGAACCCGTC
GATTATGACGACGATATGGATGACTTCATCGACGACGGCGGTAGAAAGAA
AAAGAAGGCTGCCGAGCGCGAAGGCCTCGTAAGTTCAGAAGCTGTTCGAC
ACGCCCGCTCAATCTTCGGAGATGCGGAGGAAATGACTCAGTACAAGGGC
GCGGGCAAACTTTTCAAGAAGAATCGAGATGGTGATGACGAAGACGATGA
AGACTTCGTTGCAGAAAAAGACGTTGGGGAAAGCGAACGGCCGCTGCGTA
GAATTCAGGACCGTGA

protein sequence of Gcaud1641.t1

>Gcaud1641.t1 ID=Gcaud1641.t1|Name=Gcaud1641.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=239bp
MSDNEGLFEDEAIAEEPEEQKFEDSSEEEEDEDNYEKDDFIVDDEGDDIG
DDDDLAAPVPHLDDSAFRDVRRKKKKKRRRHREDSPELAEGDLQLLEEGG
VRIDRRKKLKRLRKGASDEEENAFVDDVRDFVDDDENMYEDRRRSTIEPV
DYDDDMDDFIDDGGRKKKKAAEREGLVSSEAVRHARSIFGDAEEMTQYKG
AGKLFKKNRDGDDEDDEDFVAEKDVGESERPLRRIQDRX

mRNA from alignment at NODE_875_length_16715_cov_4.214690:16000..16715+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1641.t1 ID=Gcaud1641.t1|Name=Gcaud1641.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=716bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:16000..16715+ (Gracilaria caudata M_176_S67 male)
ATGTCCGACAACGAAGGATTGTTCGAAGACGAGGCGATAGCGGAAGAACC
AGAAGAACAAAAATTCGAGGACTCCAGTgaggaagaagaggatgaggaca
actacgagaaggacgacttcatcgtcgacgacgaaggcgacgaTATAGGA
GATGATGATGACCTAGCAGCCCCTGTCCCGCATCTTGATGACAGTGCTTT
CCGTGACGTGCGGCGAAAGAAGAAAAAGAAGCGACGCCGTCACCGCGAAG
ATTCTCCAGAACTGGCTGAGGGGGATCTGCAACTGTTAGAAGAAGGAGGT
GTGCGAATTGACAGGCGCAAAAAGCTGAAACGTCTTCGCAAAGGCGCTTC
GGACGAAGAGGAAAACGCTTTTGTGGACGACGTTAGAGACTTTGTAGATG
ACGATGAAAATATGTACGAAGATCGCAGACGCTCGACCATTGAACCCGTC
GATTATGACGACGATATGGATGACTTCATCGACGACGGCGGTAGAAAGAA
AAAGAAGGCTGCCGAGCGCGAAGGCCTCGTAAGTTCAGAAGCTGTTCGAC
ACGCCCGCTCAATCTTCGGAGATGCGGAGGAAATGACTCAGTACAAGGGC
GCGGGCAAACTTTTCAAGAAGAATCGAGATGGTGATGACGAAGACGATGA
AGACTTCGTTGCAGAAAAAGACGTTGGGGAAAGCGAACGGCCGCTGCGTA
GAATTCAGGACCGTGA

Coding sequence (CDS) from alignment at NODE_875_length_16715_cov_4.214690:16000..16715+

>Gcaud1641.t1 ID=Gcaud1641.t1|Name=Gcaud1641.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=716bp|location=Sequence derived from alignment at NODE_875_length_16715_cov_4.214690:16000..16715+ (Gracilaria caudata M_176_S67 male)
ATGTCCGACAACGAAGGATTGTTCGAAGACGAGGCGATAGCGGAAGAACC
AGAAGAACAAAAATTCGAGGACTCCAGTgaggaagaagaggatgaggaca
actacgagaaggacgacttcatcgtcgacgacgaaggcgacgaTATAGGA
GATGATGATGACCTAGCAGCCCCTGTCCCGCATCTTGATGACAGTGCTTT
CCGTGACGTGCGGCGAAAGAAGAAAAAGAAGCGACGCCGTCACCGCGAAG
ATTCTCCAGAACTGGCTGAGGGGGATCTGCAACTGTTAGAAGAAGGAGGT
GTGCGAATTGACAGGCGCAAAAAGCTGAAACGTCTTCGCAAAGGCGCTTC
GGACGAAGAGGAAAACGCTTTTGTGGACGACGTTAGAGACTTTGTAGATG
ACGATGAAAATATGTACGAAGATCGCAGACGCTCGACCATTGAACCCGTC
GATTATGACGACGATATGGATGACTTCATCGACGACGGCGGTAGAAAGAA
AAAGAAGGCTGCCGAGCGCGAAGGCCTCGTAAGTTCAGAAGCTGTTCGAC
ACGCCCGCTCAATCTTCGGAGATGCGGAGGAAATGACTCAGTACAAGGGC
GCGGGCAAACTTTTCAAGAAGAATCGAGATGGTGATGACGAAGACGATGA
AGACTTCGTTGCAGAAAAAGACGTTGGGGAAAGCGAACGGCCGCTGCGTA
GAATTCAGGACCGTGA