Gcaud1502.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1502.t1
Unique Name	Gcaud1502.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	427

Homology

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BLAST of Gcaud1502.t1 vs. uniprot
Match: A0A2V3IQU1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQU1_9FLOR)

HSP 1 Score: 208 bits (529), Expect = 6.710e-59
Identity = 125/345 (36.23%), Postives = 185/345 (53.62%), Query Frame = 0

Query:   84 FNSFKTIHSKLNGLATVLPPHVSPVFRASGSCSGGDGFGVDVEDFSLEETVGTGGCRSGKQCRARLLLTKEGSEVSVKAGFNIFSNTEPKAIRSVEQQNAAAVTRTEAIEWATKLLKRTQEALDEVACDVTADMIADAIMESKDSAARCPITSDPLCTKLITIQVCQLSAPSSISFETESQKKCRKFLESGTAVDSLDYLKDTSPCAEQFIEYDRGLMFISAPLCITNCPTSSCPYAEHVVYAPFGPIGSRPGGKSKE--EQLRLIASAFTVAYGNIIGNELPRCDNLPYE--SVMQDVEYLVFYPKKITAQLEEYNSRGGLVIKGIVYLADPTLDALISASCAS 424
            + + +  +SK  G+A      + PV RA  SC  G      VEDF +E+ + TG C  G+ CRAR++++KEG++V++K+G+ IF N     +    ++N   VTR EA  WA  LL + Q  LD+V C VTADMIAD IM +KD AA CP T  PLC++L  ++ C ++ PS    ETE +KKC +FLES + V + + L  TSPC +    Y+R  + + AP C T CP  SCP  E  V+  F   G+   G +    E    + S +  AY   + + LP CDN+PY       + E L        A+  E  +    V+    YL+   +D  I+++C++
Sbjct:  118 YQTQRPAYSKAYGVAKTSSSFLPPVTRADSSCGTGT-----VEDFVVEKRISTGDCNGGRLCRARVIVSKEGNQVTIKSGYYIFRNKGVTPLNPYTRRNVKKVTRREATIWAQNLLSKIQSDLDKVQCPVTADMIADGIMNTKDDAASCPRTDHPLCSRLFLLKTCTIAEPSG---ETEQEKKCVEFLESSSPVATFEELSRTSPCEDVSFLYNR--IGMKAPFCTTTCP--SCPDQERTVFINFVVQGANANGAALNATEVSDSLTSLYKAAYNISVASTLPACDNVPYNRSGTSSNGELLTVANYYEEARPPELETDRFFVVY-TYYLSPGPVDDAINSTCSN 449

The following BLAST results are available for this feature:

BLAST of Gcaud1502.t1 vs. uniprot

BLAST of Gcaud1502.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IQU1_9FLOR	6.710e-59	36.23	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..28
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 49..426
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 29..48
None	No IPR available	TMHMM	TMhelix		coord: 27..49

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5516_length_1546_cov_13.865292	contig	NODE_5516_length_1546_cov_13.865292:2..1280 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1502.t1	Gcaud1502.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_5516_length_1546_cov_13.865292 2..1280 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1502.t1 ID=Gcaud1502.t1|Name=Gcaud1502.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=427bp
XCPDAATRSPISLGGNQLRSALKRSKSTALFLLTAISALAFLTLNNYGAP
RLSYSHVAIADSHFHALPTFRWRKNSGKLQSFVFNSFKTIHSKLNGLATV
LPPHVSPVFRASGSCSGGDGFGVDVEDFSLEETVGTGGCRSGKQCRARLL
LTKEGSEVSVKAGFNIFSNTEPKAIRSVEQQNAAAVTRTEAIEWATKLLK
RTQEALDEVACDVTADMIADAIMESKDSAARCPITSDPLCTKLITIQVCQ
LSAPSSISFETESQKKCRKFLESGTAVDSLDYLKDTSPCAEQFIEYDRGL
MFISAPLCITNCPTSSCPYAEHVVYAPFGPIGSRPGGKSKEEQLRLIASA
FTVAYGNIIGNELPRCDNLPYESVMQDVEYLVFYPKKITAQLEEYNSRGG
LVIKGIVYLADPTLDALISASCASNA*