Gcaud1502.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1502.t1
Unique Name	Gcaud1502.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	427

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5516_length_1546_cov_13.865292	contig	NODE_5516_length_1546_cov_13.865292:2..1280 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1502	Gcaud1502	Gracilaria caudata M_176_S67 male	gene	NODE_5516_length_1546_cov_13.865292 2..1280 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1502.t1.CDS1	Gcaud1502.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5516_length_1546_cov_13.865292 2..1280 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1502.t1.exon1	Gcaud1502.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5516_length_1546_cov_13.865292 2..1280 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1502.t1.stop1	Gcaud1502.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5516_length_1546_cov_13.865292 1278..1280 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1502.t1	Gcaud1502.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5516_length_1546_cov_13.865292 2..1280 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5516_length_1546_cov_13.865292:2..1280+
coding sequence from alignment at NODE_5516_length_1546_cov_13.865292:2..1280+

mRNA sequence

>Gcaud1502.t1 ID=Gcaud1502.t1|Name=Gcaud1502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=427bp
XCPDAATRSPISLGGNQLRSALKRSKSTALFLLTAISALAFLTLNNYGAP
RLSYSHVAIADSHFHALPTFRWRKNSGKLQSFVFNSFKTIHSKLNGLATV
LPPHVSPVFRASGSCSGGDGFGVDVEDFSLEETVGTGGCRSGKQCRARLL
LTKEGSEVSVKAGFNIFSNTEPKAIRSVEQQNAAAVTRTEAIEWATKLLK
RTQEALDEVACDVTADMIADAIMESKDSAARCPITSDPLCTKLITIQVCQ
LSAPSSISFETESQKKCRKFLESGTAVDSLDYLKDTSPCAEQFIEYDRGL
MFISAPLCITNCPTSSCPYAEHVVYAPFGPIGSRPGGKSKEEQLRLIASA
FTVAYGNIIGNELPRCDNLPYESVMQDVEYLVFYPKKITAQLEEYNSRGG
LVIKGIVYLADPTLDALISASCASNA*

spliced messenger RNA

>Gcaud1502.t1 ID=Gcaud1502.t1|Name=Gcaud1502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1279bp|location=Sequence derived from alignment at NODE_5516_length_1546_cov_13.865292:2..1280+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCCCGATGCTGCCACTAGATCTCCAATTTCGTTGGGTGGCAATCAAT
TGCGCTCAGCTCTCAAGCGGAGCAAGTCTACTGCTCTCTTCCTTTTGACT
GCCATTTCAGCTCTTGCTTTCTTGACGCTAAACAACTACGGCGCCCCCCG
TCTCTCGTACAGTCATGTTGCGATTGCAGATAGTCACTTCCACGCTCTCC
CTACCTTTCGATGGAGGAAAAACTCCGGCAAACTCCAATCCTTCGTTTTC
AACTCGTTCAAAACGATTCACTCCAAACTCAATGGATTGGCTACTGTCCT
CCCTCCACACGTCTCTCCTGTGTTCCGTGCGAGTGGCTCATGCAGTGGAG
GAGACGGCTTTGGGGTAGATGTAGAAGATTTCTCGTTGGAAGAAACAGTT
GGAACGGGTGGCTGTCGTTCTGGGAAACAATGCAGGGCACGACTTCTATT
GACCAAGGAAGGCAGTGAAGTAAGCGTCAAAGCAGGATTCAACATTTTCT
CCAACACAGAACCCAAGGCTATCCGGAGTGTGGAACAGCAAAACGCTGCA
GCTGTCACACGTACGGAAGCTATCGAATGGGCGACAAAACTGCTCAAGAG
AACTCAAGAGGCTTTAGACGAGGTAGCCTGTGATGTAACTGCTGATATGA
TTGCTGATGCCATCATGGAAAGCAAGGACAGTGCTGCTCGATGCCCAATA
ACAAGCGATCCGCTCTGCACTAAACTGATCACTATCCAGGTGTGCCAGCT
AAGCGCTCCCTCTTCTATATCTTTCGAAACCGAATCTCAGAAAAAATGCA
GGAAGTTCCTGGAGTCCGGGACGGCTGTCGACAGCTTAGACTATCTCAAG
GACACCTCACCGTGCGCTGAACAATTTATTGAATATGACAGAGGACTCAT
GTTTATTTCCGCTCCACTATGCATCACGAACTGCCCTACATCTTCATGTC
CGTACGCTGAACATGTCGTATACGCGCCTTTTGGCCCGATAGGAAGTCGA
CCGGGGGGAAAAAGCAAAGAGGAGCAGCTTCGACTTATCGCTTCCGCTTT
CACCGTGGCCTACGGAAACATAATTGGAAATGAACTTCCTCGCTGTGATA
ATTTACCGTACGAATCCGTGATGCAAGATGTCGAGTACCTGGTTTTCTAT
CCGAAAAAGATAACGGCTCAGCTAGAAGAGTACAATTCGCGTGGTGGACT
TGTAATCAAGGGTATAGTGTACTTAGCAGACCCAACGCTGGATGCCCTTA
TTAGTGCGAGCTGTGCTTCGAATGCTTAG

protein sequence of Gcaud1502.t1

>Gcaud1502.t1 ID=Gcaud1502.t1|Name=Gcaud1502.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=427bp
XCPDAATRSPISLGGNQLRSALKRSKSTALFLLTAISALAFLTLNNYGAP
RLSYSHVAIADSHFHALPTFRWRKNSGKLQSFVFNSFKTIHSKLNGLATV
LPPHVSPVFRASGSCSGGDGFGVDVEDFSLEETVGTGGCRSGKQCRARLL
LTKEGSEVSVKAGFNIFSNTEPKAIRSVEQQNAAAVTRTEAIEWATKLLK
RTQEALDEVACDVTADMIADAIMESKDSAARCPITSDPLCTKLITIQVCQ
LSAPSSISFETESQKKCRKFLESGTAVDSLDYLKDTSPCAEQFIEYDRGL
MFISAPLCITNCPTSSCPYAEHVVYAPFGPIGSRPGGKSKEEQLRLIASA
FTVAYGNIIGNELPRCDNLPYESVMQDVEYLVFYPKKITAQLEEYNSRGG
LVIKGIVYLADPTLDALISASCASNA*

mRNA from alignment at NODE_5516_length_1546_cov_13.865292:2..1280+

Legend: CDSpolypeptideexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1502.t1 ID=Gcaud1502.t1|Name=Gcaud1502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1279bp|location=Sequence derived from alignment at NODE_5516_length_1546_cov_13.865292:2..1280+ (Gracilaria caudata M_176_S67 male)
CTGCCCCGATGCTGCCACTAGATCTCCAATTTCGTTGGGTGGCAATCAAT
TGCGCTCAGCTCTCAAGCGGAGCAAGTCTACTGCTCTCTTCCTTTTGACT
GCCATTTCAGCTCTTGCTTTCTTGACGCTAAACAACTACGGCGCCCCCCG
TCTCTCGTACAGTCATGTTGCGATTGCAGATAGTCACTTCCACGCTCTCC
CTACCTTTCGATGGAGGAAAAACTCCGGCAAACTCCAATCCTTCGTTTTC
AACTCGTTCAAAACGATTCACTCCAAACTCAATGGATTGGCTACTGTCCT
CCCTCCACACGTCTCTCCTGTGTTCCGTGCGAGTGGCTCATGCAGTGGAG
GAGACGGCTTTGGGGTAGATGTAGAAGATTTCTCGTTGGAAGAAACAGTT
GGAACGGGTGGCTGTCGTTCTGGGAAACAATGCAGGGCACGACTTCTATT
GACCAAGGAAGGCAGTGAAGTAAGCGTCAAAGCAGGATTCAACATTTTCT
CCAACACAGAACCCAAGGCTATCCGGAGTGTGGAACAGCAAAACGCTGCA
GCTGTCACACGTACGGAAGCTATCGAATGGGCGACAAAACTGCTCAAGAG
AACTCAAGAGGCTTTAGACGAGGTAGCCTGTGATGTAACTGCTGATATGA
TTGCTGATGCCATCATGGAAAGCAAGGACAGTGCTGCTCGATGCCCAATA
ACAAGCGATCCGCTCTGCACTAAACTGATCACTATCCAGGTGTGCCAGCT
AAGCGCTCCCTCTTCTATATCTTTCGAAACCGAATCTCAGAAAAAATGCA
GGAAGTTCCTGGAGTCCGGGACGGCTGTCGACAGCTTAGACTATCTCAAG
GACACCTCACCGTGCGCTGAACAATTTATTGAATATGACAGAGGACTCAT
GTTTATTTCCGCTCCACTATGCATCACGAACTGCCCTACATCTTCATGTC
CGTACGCTGAACATGTCGTATACGCGCCTTTTGGCCCGATAGGAAGTCGA
CCGGGGGGAAAAAGCAAAGAGGAGCAGCTTCGACTTATCGCTTCCGCTTT
CACCGTGGCCTACGGAAACATAATTGGAAATGAACTTCCTCGCTGTGATA
ATTTACCGTACGAATCCGTGATGCAAGATGTCGAGTACCTGGTTTTCTAT
CCGAAAAAGATAACGGCTCAGCTAGAAGAGTACAATTCGCGTGGTGGACT
TGTAATCAAGGGTATAGTGTACTTAGCAGACCCAACGCTGGATGCCCTTA
TTAGTGCGAGCTGTGCTTCGAATGCTTAG

Coding sequence (CDS) from alignment at NODE_5516_length_1546_cov_13.865292:2..1280+

>Gcaud1502.t1 ID=Gcaud1502.t1|Name=Gcaud1502.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1279bp|location=Sequence derived from alignment at NODE_5516_length_1546_cov_13.865292:2..1280+ (Gracilaria caudata M_176_S67 male)
CTGCCCCGATGCTGCCACTAGATCTCCAATTTCGTTGGGTGGCAATCAAT
TGCGCTCAGCTCTCAAGCGGAGCAAGTCTACTGCTCTCTTCCTTTTGACT
GCCATTTCAGCTCTTGCTTTCTTGACGCTAAACAACTACGGCGCCCCCCG
TCTCTCGTACAGTCATGTTGCGATTGCAGATAGTCACTTCCACGCTCTCC
CTACCTTTCGATGGAGGAAAAACTCCGGCAAACTCCAATCCTTCGTTTTC
AACTCGTTCAAAACGATTCACTCCAAACTCAATGGATTGGCTACTGTCCT
CCCTCCACACGTCTCTCCTGTGTTCCGTGCGAGTGGCTCATGCAGTGGAG
GAGACGGCTTTGGGGTAGATGTAGAAGATTTCTCGTTGGAAGAAACAGTT
GGAACGGGTGGCTGTCGTTCTGGGAAACAATGCAGGGCACGACTTCTATT
GACCAAGGAAGGCAGTGAAGTAAGCGTCAAAGCAGGATTCAACATTTTCT
CCAACACAGAACCCAAGGCTATCCGGAGTGTGGAACAGCAAAACGCTGCA
GCTGTCACACGTACGGAAGCTATCGAATGGGCGACAAAACTGCTCAAGAG
AACTCAAGAGGCTTTAGACGAGGTAGCCTGTGATGTAACTGCTGATATGA
TTGCTGATGCCATCATGGAAAGCAAGGACAGTGCTGCTCGATGCCCAATA
ACAAGCGATCCGCTCTGCACTAAACTGATCACTATCCAGGTGTGCCAGCT
AAGCGCTCCCTCTTCTATATCTTTCGAAACCGAATCTCAGAAAAAATGCA
GGAAGTTCCTGGAGTCCGGGACGGCTGTCGACAGCTTAGACTATCTCAAG
GACACCTCACCGTGCGCTGAACAATTTATTGAATATGACAGAGGACTCAT
GTTTATTTCCGCTCCACTATGCATCACGAACTGCCCTACATCTTCATGTC
CGTACGCTGAACATGTCGTATACGCGCCTTTTGGCCCGATAGGAAGTCGA
CCGGGGGGAAAAAGCAAAGAGGAGCAGCTTCGACTTATCGCTTCCGCTTT
CACCGTGGCCTACGGAAACATAATTGGAAATGAACTTCCTCGCTGTGATA
ATTTACCGTACGAATCCGTGATGCAAGATGTCGAGTACCTGGTTTTCTAT
CCGAAAAAGATAACGGCTCAGCTAGAAGAGTACAATTCGCGTGGTGGACT
TGTAATCAAGGGTATAGTGTACTTAGCAGACCCAACGCTGGATGCCCTTA
TTAGTGCGAGCTGTGCTTCGAATGCTTAG