Gcaud1453.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1453.t1
Unique NameGcaud1453.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length175
Homology
[Close]
BLAST of Gcaud1453.t1 vs. uniprot
Match: A0A2V3J6R2_9FLOR (Thylakoid lumenal 15 kDa protein 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6R2_9FLOR)

HSP 1 Score: 177 bits (448), Expect = 1.520e-53
Identity = 130/168 (77.38%), Postives = 142/168 (84.52%), Query Frame = 0 
Query:    7 TDLSRRLATIITALAASASLALSPSYAVSGGGKDYASQNWTGQTFHGSFSGKDXXXXXXXXXXXXXXXXTNTRFFKAELREADMTGANLSYSSVEAAILRDTKLTXXXXXXXXXXXXXXXXXXXXXXXXXXXLISPESAVVKLCEREDAKGVNSTTGVSTRESLMCPE 174
            T  + R+A  I ALA + SL LSP++AVSGGGKDYASQNWTGQTFHGS+SGKDXXXXXXXXXXXXXXXX NTRFFKAELREA+M   NLSYSS+EAAILRDT  T           XXXXXXXXXXXXXXXXLISPESAVVKLC+R+DAKG+NSTTGVSTRESLMCP+
Sbjct:   13 TRTAHRIAATIAALATATSLTLSPAHAVSGGGKDYASQNWTGQTFHGSYSGKDXXXXXXXXXXXXXXXXXNTRFFKAELREANMNAVNLSYSSIEAAILRDTDFTDAIMVGSYISDXXXXXXXXXXXXXXXXLISPESAVVKLCQRDDAKGLNSTTGVSTRESLMCPD 180
[Close]
BLAST of Gcaud1453.t1 vs. uniprot
Match: A0A7S2I9G5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I9G5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.120e-6
Identity = 51/154 (33.12%), Postives = 66/154 (42.86%), Query Frame = 0 
Query:   25 SLALSP--SYAVSGGGKDYASQNWTGQTFHGS---FSGKDXXXXXXXXXXXXXXXXTNTRFFKAELREADMTGANLSYSSVEAAILRDTKLTXXXXXXXXXXXXXXXXXXXXXXXXXXXLISPESAVVKLCEREDAKGVNSTTGVSTRESLMCP 173
            S A+SP  + AVSGGGKD+A+ + TGQ F  +   + GKD                   RF+KA L  AD +G                   XXXX                        I P   + ++CEREDAKG N ++G  TR+SLMCP
Sbjct:   81 STAISPPAANAVSGGGKDFANLDITGQDFANNSKDYKGKDFSQVIAKGTQFMNSNLQGCRFYKAYLVNADFSGXXXXXXXXXXXXXXXXXXXXXXXAGAYFSQSLLDVKTIENADFTDAQI-PIKILPQICEREDAKGTNPSSGADTRDSLMCP 233
The following BLAST results are available for this feature:
BLAST of Gcaud1453.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J6R2_9FLOR1.520e-5377.38Thylakoid lumenal 15 kDa protein 1, chloroplastic ... [more]
A0A7S2I9G5_9STRA1.120e-633.12Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001646Pentapeptide repeatPFAMPF00805Pentapeptidecoord: 65..96
e-value: 1.4E-8
score: 34.2
coord: 103..138
e-value: 0.0013
score: 18.3
NoneNo IPR availableGENE3D2.160.20.80coord: 35..174
e-value: 1.8E-23
score: 84.3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..174
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availableSUPERFAMILY141571Pentapeptide repeat-likecoord: 43..140
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
IPR044213Thylakoid lumenal 15kDa protein 1-likePANTHERPTHR47200THYLAKOID LUMENAL 15 KDA PROTEIN 1, CHLOROPLASTICcoord: 14..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1295_length_11728_cov_4.118158contigNODE_1295_length_11728_cov_4.118158:8774..9298 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1453.t1Gcaud1453.t1Gracilaria caudata M_176_S67 malemRNANODE_1295_length_11728_cov_4.118158 8774..9298 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1453.t1 ID=Gcaud1453.t1|Name=Gcaud1453.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=175bp
MSSAENTDLSRRLATIITALAASASLALSPSYAVSGGGKDYASQNWTGQT
FHGSFSGKDFSGGLFRGCDFAGSDLTNTRFFKAELREADMTGANLSYSSV
EAAILRDTKLTDAVMVGSYISDSILDAASIENADFTDALISPESAVVKLC
EREDAKGVNSTTGVSTRESLMCPE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat
IPR044213At2g44920-like