Gcaud1452.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1452.t1
Unique Name	Gcaud1452.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	267

Homology

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BLAST of Gcaud1452.t1 vs. uniprot
Match: A0A2V3IRD5_9FLOR (Putative glucuronosyltransferase PGSIP8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRD5_9FLOR)

HSP 1 Score: 205 bits (521), Expect = 1.410e-59
Identity = 119/261 (45.59%), Postives = 161/261 (61.69%), Query Frame = 0

Query:    1 MRFPPAITTPHYLFYQRMRWELPSEHCGLQTIIDFSTPAFTRPTNIITLVLLRLNRHWYQYRSQLQHVATESVFSEALLLFIFLSVIVALYVTSVRLPSPS-PKHRRALSVIPYLPHDLLIFYWLGASFVFNAVCWLLSVHVCQLCASLSVAVAVLLVTKIMCSSVAYAALGSVFMRFATPDDAHSAAMT--TTQRASVTTLLLNVLESIAVTALVYIANVLPAETGFRRLLWLLVCIAIYFVFWLYVMIVLFWSWLAAGA 258
            MR PP I  PHYL+Y RMRWE+PS HCG Q +IDFSTP F RPTNII LVLL LNR WY YR+QL  + T+      + LF    +  A+Y    R+ S + P   R +   P   H + I+YWL    + N   W LS+   Q  +S+  +++VL   KI+ +++AY  LG +   FAT DD  +  ++  +++RA+V  + LN +E + V  L+ + N LPAETGFRRLLWL + +A+Y +F LYVMI LFW WL AGA
Sbjct:  212 MRLPPGIAVPHYLYYPRMRWEIPSNHCGQQAVIDFSTPQFARPTNIIMLVLLHLNRQWYTYRAQLHDIPTDHNVHSFVTLFSVCMLAFAVYYQLSRMGSSNRPSTPRVVKWSPAAHHSV-IYYWLSICTLANIASWTLSLQASQTYSSIWPSLSVLCTYKIVTTTLAYICLGDLLRAFATHDDVVTDRVSAISSKRAAVQCVALNAVELVVVLLLIVLTNSLPAETGFRRLLWLFLSLAVYAMFMLYVMITLFWKWLGAGA 471

The following BLAST results are available for this feature:

BLAST of Gcaud1452.t1 vs. uniprot

BLAST of Gcaud1452.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IRD5_9FLOR	1.410e-59	45.59	Putative glucuronosyltransferase PGSIP8 n=1 Tax=Gr...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 176..195
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 77..97
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 217..227
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 257..266
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 118..138
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 98..117
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 150..175
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 228..256
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..76
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 196..216
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 139..149
None	No IPR available	TMHMM	TMhelix		coord: 229..251
None	No IPR available	TMHMM	TMhelix		coord: 194..216
None	No IPR available	TMHMM	TMhelix		coord: 119..141
None	No IPR available	TMHMM	TMhelix		coord: 148..170
None	No IPR available	TMHMM	TMhelix		coord: 73..95

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1295_length_11728_cov_4.118158	contig	NODE_1295_length_11728_cov_4.118158:6981..7781 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1452.t1	Gcaud1452.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1295_length_11728_cov_4.118158 6981..7781 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1452.t1 ID=Gcaud1452.t1|Name=Gcaud1452.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=267bp
MRFPPAITTPHYLFYQRMRWELPSEHCGLQTIIDFSTPAFTRPTNIITLV
LLRLNRHWYQYRSQLQHVATESVFSEALLLFIFLSVIVALYVTSVRLPSP
SPKHRRALSVIPYLPHDLLIFYWLGASFVFNAVCWLLSVHVCQLCASLSV
AVAVLLVTKIMCSSVAYAALGSVFMRFATPDDAHSAAMTTTQRASVTTLL
LNVLESIAVTALVYIANVLPAETGFRRLLWLLVCIAIYFVFWLYVMIVLF
WSWLAAGAWSFKLDKV*