Gcaud1447.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1447.t1
Unique NameGcaud1447.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length578
Homology
BLAST of Gcaud1447.t1 vs. uniprot
Match: A0A2V3IGS3_9FLOR (Thymocyte nuclear protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGS3_9FLOR)

HSP 1 Score: 267 bits (682), Expect = 1.510e-82
Identity = 125/158 (79.11%), Postives = 138/158 (87.34%), Query Frame = 0
Query:   76 TQYYLFKSESESRMQNGHEMKFSIDDLQREPDATTHWDGVRNAEACKCMRGMQKGDMAFFYHSNTKKTRPSIVGVVRVVSDPYPDHTAFDKNDPHYDPRSKSEAPRWYMVDVQFVRKFHTAITLDQIKAEPDLANMQLVKRSRISVQRVTPDEWNVVH 233
            T++YLFKSESESR+QNGH+MKFSIDDL+ E D  THWDGVRNAEAC CM+ M KGDMAFFYHSNT K+RPS+VGVVRVVSDPYPDHTAFDK+D HYD RSK E PRW+MVDVQFVRKFH A+TL  IK +P LA+MQLVKRSRISVQ VTP EW VVH
Sbjct:   70 TEFYLFKSESESRLQNGHQMKFSIDDLRAERDGITHWDGVRNAEACNCMKRMNKGDMAFFYHSNTNKSRPSVVGVVRVVSDPYPDHTAFDKSDVHYDARSKREKPRWFMVDVQFVRKFHNAVTLHCIKNDPRLADMQLVKRSRISVQSVTPHEWQVVH 227          
BLAST of Gcaud1447.t1 vs. uniprot
Match: A0A2V3IGP0_9FLOR (Tetratricopeptide repeat protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGP0_9FLOR)

HSP 1 Score: 258 bits (658), Expect = 2.160e-79
Identity = 140/207 (67.63%), Postives = 169/207 (81.64%), Query Frame = 0
Query:  373 SSSNEAEEEYMRMRM--ASTNISDDNQPEVDPKAQLDDTITADAARTLKEEGNALYKSGHFSEAIEKYTLASSSAHASQDDRAVYFANRAAAHLKLQNFEAVVKDASAALELKPGYVKALSRRREAREALKEWRGALKDAQELNAPASDIKRLQFLADEKDKKDQAEALDSLKGLGNSILSNFGMSLDDFAMDKDPETGSYSISMKK 577
            SS  +AEEEYMRMR   +S   S  + P  D + QLD +I+ADAAR LKEEGNAL+K+ H+ +AIEKYT A  SAHAS  DRAVY ANRAAAHLKLQNF+ VV+D S AL L P YVKALSRRR+AREALK+W GA++DA++L+   +DI+RLQ LA+EKDK+D+ EA+ SLKGLGNSILSNFGMSLDDF++DKDP+TGSYSI+MKK
Sbjct:    3 SSIRDAEEEYMRMRTTPSSEQTSSHHHPSADTQ-QLDHSISADAARALKEEGNALFKTAHYQQAIEKYTQACKSAHASDQDRAVYLANRAAAHLKLQNFQQVVQDTSEALRLNPAYVKALSRRRQAREALKDWAGAVQDAKQLHESPADIRRLQMLAEEKDKRDREEAMQSLKGLGNSILSNFGMSLDDFSVDKDPQTGSYSINMKK 208          
BLAST of Gcaud1447.t1 vs. uniprot
Match: Q7XZ74_GRIJA (Translocase (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XZ74_GRIJA)

HSP 1 Score: 183 bits (464), Expect = 1.930e-51
Identity = 94/161 (58.39%), Postives = 123/161 (76.40%), Query Frame = 0
Query:  416 RTLKEEGNALYKSGHFSEAIEKYTLASSSAHASQDDRAVYFANRAAAHLKLQNFEAVVKDASAALELKPGYVKALSRRREAREALKEWRGALKDAQELNAPASDIKRLQFLADEKDKKDQAEALDSLKGLGNSILSNFGMSLDDFAMDKDPETGSYSISMK 576
            R  KEE NALY + ++  AI  YT+A SS H    +RA+Y ANRAAA LKLQ F+ VV+DAS AL+L PGYVKAL RR+EARE L +W+GAL+DA++L  P +++ RL   A +K+  D+ EA+ +LKGLGNSILSNFGMSLDDFA++KDP +GS+++ MK
Sbjct:    1 RARKEEANALYNAANYHRAIHLYTVAISSPHVPDHERAIYLANRAAAALKLQRFQDVVRDASQALDLNPGYVKALVRRKEARERLADWQGALEDAKQLALPPAELHRLSTAAQQKEATDRQEAMSALKGLGNSILSNFGMSLDDFAVEKDPNSGSFNVKMK 161          
BLAST of Gcaud1447.t1 vs. uniprot
Match: C5LZC3_PERM5 (EVE domain-containing protein n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LZC3_PERM5)

HSP 1 Score: 176 bits (445), Expect = 4.990e-48
Identity = 85/157 (54.14%), Postives = 111/157 (70.70%), Query Frame = 0
Query:   78 YYLFKSESESRMQNGHEMKFSIDDLQREPDATTHWDGVRNAEACKCMRGMQKGDMAFFYHSNTKKTRPSIVGVVRVVSDPYPDHTAFDKNDPHYDPRSKSEAPRWYMVDVQFVRKFHTAITLDQIKA--EPDLANMQLVKRSRISVQRVTPDEWNVV 232
            +YLFKSE ESR++ G +MKFSIDDL   P+ T  WDGVRN +A   MR M+ GD  FFYHSN K   P IVG+V VV + YPD T FD  +PH+DPRS  E P+W MVD++F+RK    I+LD++KA  + +L++M L   +R+SVQRVTP EW+ +
Sbjct:   37 FYLFKSEPESRIEKGVDMKFSIDDLAASPNGTAEWDGVRNYQARNLMREMKVGDKGFFYHSNCKP--PGIVGIVEVVRESYPDDTQFDPKNPHFDPRSGKEEPKWDMVDIKFIRKLSRKISLDELKAYRDKELSSMGLFTTARLSVQRVTPAEWDFI 191          
BLAST of Gcaud1447.t1 vs. uniprot
Match: A0A0G4EFY8_VITBC (EVE domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EFY8_VITBC)

HSP 1 Score: 175 bits (443), Expect = 1.100e-47
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 0
Query:   78 YYLFKSESESRMQNGHEMKFSIDDLQREPDATTHWDGVRNAEACKCMRGMQKGDMAFFYHSNTKKTRPSIVGVVRVVSDPYPDHTAFDKNDPHYDPRSKSEAPRWYMVDVQFVRKFHTAITLDQIKA--EPDLANMQLVKRSRISVQRVTPDEWNVV 232
            Y+L KSE +SRM+ G +MKFSIDDL+  PD T  WDGVRN +A   MRGM+ GD AFFYHSN K   P IVG+  +V + YPDHT FD+ +PHYD +SK E PRW MVDV+F R+    I+L+++K   E +L +M L  R+R+SV  V+ DEW+ +
Sbjct:   30 YFLMKSEPDSRMEKGMDMKFSIDDLKESPDQTAEWDGVRNFQARNVMRGMKVGDKAFFYHSNCKV--PGIVGIATIVREAYPDHTQFDEKNPHYDAKSKKEDPRWDMVDVKFERELERMISLEELKRYKEKELKDMHLFTRARLSVSPVSADEWSFI 184          
BLAST of Gcaud1447.t1 vs. uniprot
Match: A0A814L058_9BILA (Thymocyte nuclear protein 1 n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814L058_9BILA)

HSP 1 Score: 170 bits (430), Expect = 1.590e-45
Identity = 83/161 (51.55%), Postives = 105/161 (65.22%), Query Frame = 0
Query:   78 YYLFKSESESRMQNGHEMKFSIDDLQREPDATTHWDGVRNAEACKCMRGMQKGDMAFFYHSNTKKTRPSIVGVVRVVSDPYPDHTAFDKNDPHYDPRSKSEAPRWYMVDVQFVRKFHTAITLDQIK--------AEPDLANMQLVKRSRISVQRVTPDEWN 230
            ++L KSE ESR++NGHEMKF +DDL+   D  THWDGVRN EA   M+ M+ G  AFFYHSN K   P +V  +++  + Y DHTAFDKNDPHYDP+S    P+WYMVDVQF R     I L ++K            L+N+ L  RSR+SVQ +T +EWN
Sbjct:   66 FWLMKSEPESRIENGHEMKFGVDDLKASKDKITHWDGVRNYEARNHMKSMKLGQRAFFYHSNCKN--PCLVATMKICKESYVDHTAFDKNDPHYDPKSDLNNPKWYMVDVQFERDLKRYIPLTELKHYHLLHKKTGGPLSNLSLFTRSRLSVQALTEEEWN 224          
BLAST of Gcaud1447.t1 vs. uniprot
Match: A0A7J6KT12_PERCH (Thymocyte nuclear protein 1 (Fragment) n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6KT12_PERCH)

HSP 1 Score: 174 bits (440), Expect = 1.250e-44
Identity = 87/157 (55.41%), Postives = 108/157 (68.79%), Query Frame = 0
Query:   78 YYLFKSESESRMQNGHEMKFSIDDLQREPDATTHWDGVRNAEACKCMRGMQKGDMAFFYHSNTKKTRPSIVGVVRVVSDPYPDHTAFDKNDPHYDPRSKSEAPRWYMVDVQFVRKFHTAITLDQIKA--EPDLANMQLVKRSRISVQRVTPDEWNVV 232
            +YL KSE ESR +NG +MKFSIDDL   P++T  WDGVRN +A   MR M+ GD AFFYHSN K   P IVG+V VV + YPD T FD  +PHYDPRS  E P+W MVDV+F+RK    I+LD++K      L++M L   +R+SVQRVTP EW  +
Sbjct:  286 FYLIKSEPESRFENGMDMKFSIDDLVDCPNSTAEWDGVRNYQARNLMREMKIGDKAFFYHSNCKP--PGIVGIVEVVREAYPDDTQFDAKNPHYDPRSSKEEPKWDMVDVKFIRKLERKISLDELKKYRTKQLSSMGLFTTARLSVQRVTPAEWQFI 440          
BLAST of Gcaud1447.t1 vs. uniprot
Match: A0A1V4J7E1_PATFA (Thymocyte nuclear protein 1 n=14 Tax=Neognathae TaxID=8825 RepID=A0A1V4J7E1_PATFA)

HSP 1 Score: 167 bits (424), Expect = 1.420e-44
Identity = 83/165 (50.30%), Postives = 111/165 (67.27%), Query Frame = 0
Query:   78 YYLFKSESESRMQNGHEMKFSIDDLQREPDATTHWDGVRNAEACKCMRGMQKGDMAFFYHSNTKKTRPSIVGVVRVVSDPYPDHTAFDKNDPHYDPRSKSEAPRWYMVDVQFVRKFHTAITLDQIKAEP--------DLANMQLVKRSRISVQRVTPDEWNVVHG 234
            ++L KSE ESR++ G ++KFSIDDL+ +P+ TTHWDGVRN +A   +R M+ G  AFFYHSN K+  P +VG+V++V + YPDHT FD+ DPHYD  S+ E P+W MVDVQFVR     I L +IKA           L NM L  R R+S+Q +T +E++ V G
Sbjct:   73 HWLLKSEPESRLEKGVDVKFSIDDLKAQPNQTTHWDGVRNYQARNFLRAMKLGQQAFFYHSNCKE--PGVVGIVKIVKEAYPDHTQFDQKDPHYDSTSRKENPKWSMVDVQFVRMTKRFIPLSEIKAHHLAHKADGGPLKNMMLFTRQRLSIQPLTQEEFDFVLG 235          
BLAST of Gcaud1447.t1 vs. uniprot
Match: UPI001896C440 (thymocyte nuclear protein 1-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI001896C440)

HSP 1 Score: 166 bits (419), Expect = 2.640e-44
Identity = 88/166 (53.01%), Postives = 110/166 (66.27%), Query Frame = 0
Query:   78 YYLFKSESESRMQNGHEMKFSIDDLQREPDATTHWDGVRNAEACKCMRGMQK-GDMAFFYHSNTKKTRPSIVGVVRVVSDPYPDHTAFDKNDPHYDPRSKSEAPRWYMVDVQFVRKFHTAITLDQIKA----------EPDLANMQLVKRSRISVQRVTPDEWNVV 232
            ++L KSE ESR++NG +MKFSIDDL + PD+T+ WDGVRN +A   +R   K G   FFYHSN K   P IVG+V VV + YPDHT FDK D HYD  S +E PRW+MVDV+FVRK    ITL ++K           +  LANM LV RSR+SVQ V  +EW+ +
Sbjct:   35 HWLLKSEPESRIENGIDMKFSIDDLVKCPDSTSCWDGVRNYQARNILRDQMKVGHQCFFYHSNCKT--PGIVGIVEVVKEGYPDHTQFDKKDNHYDRLSTTEKPRWFMVDVKFVRKLDRQITLAELKTLHEKHKSQNPKGPLANMALVARSRLSVQPVRKEEWDFI 198          
BLAST of Gcaud1447.t1 vs. uniprot
Match: UPI000C7873B2 (thymocyte nuclear protein 1-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C7873B2)

HSP 1 Score: 164 bits (416), Expect = 5.770e-44
Identity = 82/163 (50.31%), Postives = 107/163 (65.64%), Query Frame = 0
Query:   78 YYLFKSESESRMQNGHEMKFSIDDLQREPDATTHWDGVRNAEACKCMRGMQKGDMAFFYHSNTKKTRPSIVGVVRVVSDPYPDHTAFDKNDPHYDPRSKSEAPRWYMVDVQFVRKFHTAITLDQIKA--------EPDLANMQLVKRSRISVQRVTPDEWNVV 232
            ++L KSE +SR +NG EMKFS DDL+    +   WDGVRN +A   MR M+ GD AFFYHSNTK   P I+G+V +V + Y DHT FDK DPHYDP+S  +APRW MVDVQ+VR     I LD++K            L+N+ L  R+R+SVQ +T +EW+ +
Sbjct:   32 HWLMKSEPDSRKENGVEMKFSFDDLKMSEGSRACWDGVRNYQARNFMRNMKIGDKAFFYHSNTKP--PGIIGIVDIVKEAYTDHTQFDKKDPHYDPKSSKDAPRWEMVDVQYVRTTQRYIPLDELKRIHLEHKAKGGPLSNLALFTRARLSVQPITQEEWDFI 192          
The following BLAST results are available for this feature:
BLAST of Gcaud1447.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IGS3_9FLOR1.510e-8279.11Thymocyte nuclear protein 1 n=1 Tax=Gracilariopsis... [more]
A0A2V3IGP0_9FLOR2.160e-7967.63Tetratricopeptide repeat protein 1 n=1 Tax=Gracila... [more]
Q7XZ74_GRIJA1.930e-5158.39Translocase (Fragment) n=1 Tax=Griffithsia japonic... [more]
C5LZC3_PERM54.990e-4854.14EVE domain-containing protein n=2 Tax=Perkinsus ma... [more]
A0A0G4EFY8_VITBC1.100e-4753.50EVE domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A814L058_9BILA1.590e-4551.55Thymocyte nuclear protein 1 n=1 Tax=Brachionus cal... [more]
A0A7J6KT12_PERCH1.250e-4455.41Thymocyte nuclear protein 1 (Fragment) n=1 Tax=Per... [more]
A0A1V4J7E1_PATFA1.420e-4450.30Thymocyte nuclear protein 1 n=14 Tax=Neognathae Ta... [more]
UPI001896C4402.640e-4453.01thymocyte nuclear protein 1-like n=1 Tax=Dermacent... [more]
UPI000C7873B25.770e-4450.31thymocyte nuclear protein 1-like n=1 Tax=Eurytemor... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 493..513
NoneNo IPR availableGENE3D3.10.590.10ph1033 like domainscoord: 76..242
e-value: 2.0E-66
score: 225.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..86
NoneNo IPR availablePANTHERPTHR14087THYMOCYTE NUCLEAR PROTEIN 1coord: 47..234
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 239..258
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 293..577
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 259..269
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 270..292
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..238
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 453..486
e-value: 0.069
score: 22.3
coord: 415..448
e-value: 21.0
score: 12.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 411..538
e-value: 2.5E-27
score: 97.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 415..512
IPR002740EVE domainPFAMPF01878EVEcoord: 77..232
e-value: 1.1E-46
score: 158.5
IPR015947PUA-like superfamilySUPERFAMILY88697PUA domain-likecoord: 76..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1021_length_14946_cov_4.146752contigNODE_1021_length_14946_cov_4.146752:7625..9967 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1447.t1Gcaud1447.t1Gracilaria caudata M_176_S67 malemRNANODE_1021_length_14946_cov_4.146752 7625..9967 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1447.t1 ID=Gcaud1447.t1|Name=Gcaud1447.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=578bp
MAVTRSSARAEPRRSSARTSTPTTKPSNKRKKTRQSLTPAKKSRNENDQR
HTIAESQPQPADSSHSPTTHTKECPTQYYLFKSESESRMQNGHEMKFSID
DLQREPDATTHWDGVRNAEACKCMRGMQKGDMAFFYHSNTKKTRPSIVGV
VRVVSDPYPDHTAFDKNDPHYDPRSKSEAPRWYMVDVQFVRKFHTAITLD
QIKAEPDLANMQLVKRSRISVQRVTPDEWNVVHGSHSILHFYGFLLAYSS
INLLSLALNDIQMTFLHRDLVIRVLAPMNILQIRSSFVVEWINRFSIFSV
KMDILSSDSVMCDDSITSFLPSKVFHHHVCLKYLRTCTVVPSQTLDQAEE
SQLHDKSVNAEHTSEPHLTVTMSSSNEAEEEYMRMRMASTNISDDNQPEV
DPKAQLDDTITADAARTLKEEGNALYKSGHFSEAIEKYTLASSSAHASQD
DRAVYFANRAAAHLKLQNFEAVVKDASAALELKPGYVKALSRRREAREAL
KEWRGALKDAQELNAPASDIKRLQFLADEKDKKDQAEALDSLKGLGNSIL
SNFGMSLDDFAMDKDPETGSYSISMKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR002740EVE_domain
IPR015947PUA-like_sf