Gcaud1442.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1442.t1
Unique Name	Gcaud1442.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	283

Homology

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BLAST of Gcaud1442.t1 vs. uniprot
Match: A0A2V3IGT2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGT2_9FLOR)

HSP 1 Score: 300 bits (769), Expect = 1.950e-99
Identity = 150/213 (70.42%), Postives = 189/213 (88.73%), Query Frame = 0

Query:   70 SYEDYEALLEENEKPLWDTLDVSKALQPLTEEEKKRLRTKLPKQLANFLIRRADAAVRLRNTKPGDSSFLGRFLGDLPPDKIEWDDPANAEFRDYVYETTTGPPSYRQKGSSLFGGGDGLPDMEDLPDVEDAVEPSNGLRFPKKVMSMFVGNVGGVDEQAAKVGYTLLALFVLLISAKILFAFISFFLSFTFSFLAIFALSAGIFVVFYLFRF 282
            ++ ++E L  E+E  LWD L+VS+AL+PLTEEEK++LR++LP +LANFLIRRADAAVRLR+TK GD SFLG+FL DLPPD  +WD+PANAE+RDYVYETTTGPPS+R++GSS+FGGGDG PD++D+P+ E  V+ +NG+ FPK+V+S+FVGNV  +DEQAAKVGYTLLALF++LI AKI+FA ISFF+SFTFSF +IFALSAGIFVVFYLF+F
Sbjct:   44 AFYNFENLFSESESSLWDNLEVSRALEPLTEEEKQKLRSRLPTKLANFLIRRADAAVRLRDTKGGDDSFLGQFLSDLPPDVPDWDNPANAEYRDYVYETTTGPPSFRRQGSSIFGGGDGAPDLKDMPNSEGFVDVTNGVTFPKQVVSLFVGNVDSIDEQAAKVGYTLLALFLVLIVAKIIFALISFFVSFTFSFFSIFALSAGIFVVFYLFKF 256

The following BLAST results are available for this feature:

BLAST of Gcaud1442.t1 vs. uniprot

BLAST of Gcaud1442.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IGT2_9FLOR	1.950e-99	70.42	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..52
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 263..280
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 281..282
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 258..262
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 236..257
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..235
None	No IPR available	TMHMM	TMhelix		coord: 258..280
None	No IPR available	TMHMM	TMhelix		coord: 232..254

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1021_length_14946_cov_4.146752	contig	NODE_1021_length_14946_cov_4.146752:1250..2098 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1442.t1	Gcaud1442.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1021_length_14946_cov_4.146752 1250..2098 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1442.t1 ID=Gcaud1442.t1|Name=Gcaud1442.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=283bp
MVASSSQPEGDKSEGDKSEGGESEGDKSEGDKSEGNPEQLIEASSQEQQQ
PQAEEPRQDEVEEEDEEDASYEDYEALLEENEKPLWDTLDVSKALQPLTE
EEKKRLRTKLPKQLANFLIRRADAAVRLRNTKPGDSSFLGRFLGDLPPDK
IEWDDPANAEFRDYVYETTTGPPSYRQKGSSLFGGGDGLPDMEDLPDVED
AVEPSNGLRFPKKVMSMFVGNVGGVDEQAAKVGYTLLALFVLLISAKILF
AFISFFLSFTFSFLAIFALSAGIFVVFYLFRF*