Gcaud1320.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1320.t1
Unique NameGcaud1320.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length359
Homology
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BLAST of Gcaud1320.t1 vs. uniprot
Match: A0A2V3IKP3_9FLOR (Kinesin-like protein KIF21B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKP3_9FLOR)

HSP 1 Score: 497 bits (1280), Expect = 2.700e-174
Identity = 241/358 (67.32%), Postives = 289/358 (80.73%), Query Frame = 0 
Query:    1 MNGTNRKQSALWTVGRASRGLLRCSDRHRDLIIAGTALTNSENSIHILTVDCETISLHPLNVLTAPSEVWSHEVVTKDSNLNIIAATRKAYRSAVEVWSLTGADDLSPRISRSPSWDASGYDAHPIRNTSFMAIDGDILKVLKNPGATSSYMALTKTGATFLSVGTSLQISLSLQLDRAKFPVKSENDIFVDAGWIDENTSYVASTRCLAACDSRTGEFELITDTEKSINTPTSVQDGVHVAPYPTRVSTSLSMDGTRLIVGGEDGSLRAYDMKKPDVVWQLPHAHAQWVSTLCETRAGEFLSGGMDGVVRCWTNDGQPIATFPQHDDIVTNATSFDSAFVTVSYDGRLAMNELPIVT 358
            M  + RKQ+ALWTVGR SRGLLRCSDR R L+IAGTA+TN EN+IHIL+VD + ISL PLNVLT PSEVWS EVV KDSNL+++AATRK YRSAVEVWSL  ADDLSPR S+   W +S Y+A PIRNTSF+AIDGDILKV+KNP  +SSYMALTK  A FL+VG SL+I ++  L+  K  + SE D  VDAGWIDENT+YVASTRCL  CD+RTG    + +T+K+I++     DG+ V  +PTR+STSL++ G +++VGGEDGSLR Y+ K  +VVWQ+ +AH QWVSTLCET+ G FLSGGMDGVVRCW  DGQP+ATFPQHDDIVTNA SFD+AFVTVSYDGR+A+NELP+ T
Sbjct:    1 MTESKRKQAALWTVGRGSRGLLRCSDRRRKLVIAGTAVTNDENAIHILSVDNDEISLTPLNVLTTPSEVWSLEVVGKDSNLHLVAATRKGYRSAVEVWSLMRADDLSPRASQPSEWGSSEYEAAPIRNTSFLAIDGDILKVVKNPSDSSSYMALTKKSAVFLTVGISLKIGVASSLESTKLLLMSETDSLVDAGWIDENTAYVASTRCLGICDTRTGTLGSVIETDKAISSYCKSGDGLQVPSHPTRISTSLAIGGDQVVVGGEDGSLRCYECKTSNVVWQVSNAHTQWVSTLCETQGGGFLSGGMDGVVRCWRKDGQPVATFPQHDDIVTNACSFDNAFVTVSYDGRIALNELPVAT 358
The following BLAST results are available for this feature:
BLAST of Gcaud1320.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IKP3_9FLOR2.700e-17467.32Kinesin-like protein KIF21B n=1 Tax=Gracilariopsis... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 275..314
e-value: 1.0
score: 17.0
coord: 316..353
e-value: 33.0
score: 7.4
coord: 237..272
e-value: 29.0
score: 7.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 285..313
e-value: 0.24
score: 12.3
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 180..351
e-value: 3.1E-17
score: 64.8
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 195..351
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 34..294

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_371_length_28318_cov_4.596486contigNODE_371_length_28318_cov_4.596486:19201..20277 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1320.t1Gcaud1320.t1Gracilaria caudata M_176_S67 malemRNANODE_371_length_28318_cov_4.596486 19201..20277 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1320.t1 ID=Gcaud1320.t1|Name=Gcaud1320.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=359bp
MNGTNRKQSALWTVGRASRGLLRCSDRHRDLIIAGTALTNSENSIHILTV
DCETISLHPLNVLTAPSEVWSHEVVTKDSNLNIIAATRKAYRSAVEVWSL
TGADDLSPRISRSPSWDASGYDAHPIRNTSFMAIDGDILKVLKNPGATSS
YMALTKTGATFLSVGTSLQISLSLQLDRAKFPVKSENDIFVDAGWIDENT
SYVASTRCLAACDSRTGEFELITDTEKSINTPTSVQDGVHVAPYPTRVST
SLSMDGTRLIVGGEDGSLRAYDMKKPDVVWQLPHAHAQWVSTLCETRAGE
FLSGGMDGVVRCWTNDGQPIATFPQHDDIVTNATSFDSAFVTVSYDGRLA
MNELPIVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf