Gcaud1264.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1264.t1
Unique NameGcaud1264.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length626
Homology
BLAST of Gcaud1264.t1 vs. uniprot
Match: A0A2V3IXH5_9FLOR (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXH5_9FLOR)

HSP 1 Score: 202 bits (515), Expect = 2.410e-53
Identity = 107/188 (56.91%), Postives = 136/188 (72.34%), Query Frame = 0
Query:  125 EGKMEDEGKHLRSKNEIDPDKITVPSIKITVNARDEIVPVGKIVSSMESVVVVSTAN---WHPNEDARPSREMSSVKSPISTDLNSVSALDHGSALCFEDRRLLGLVDETFGPVECPFYVVRFNTVEERDAIGAEHGRMVYVVKEQSSWVRGSDVLSKGYDTSNWDDEECNVPDEYSDDEEERAAKQA 309
            E K + + KHLRS+NE+DP  I +P   I V+A DEI PVGKI+S +ESVV+VST        N +A P    + +    +T+LN VSALDH S LCFE+R+L GL+DETFGPV+ PFYVVRFN  EERD+ GA  GR V+ VK +S WV+GS++ +KGYDTSNW+DEE    D++SDDE+ERAAKQA
Sbjct:  122 EDKTDSDQKHLRSRNEVDPGTIKLPRPNIIVSADDEIYPVGKIMSVLESVVIVSTGKDCLLDQNSEA-PQAPANRISFSQATNLNLVSALDHDSVLCFENRQLFGLIDETFGPVDNPFYVVRFNNEEERDSAGAAKGRTVFAVKHKSKWVKGSELQTKGYDTSNWNDEEVTATDDFSDDEDERAAKQA 308          
BLAST of Gcaud1264.t1 vs. uniprot
Match: R7QEQ3_CHOCR (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEQ3_CHOCR)

HSP 1 Score: 114 bits (285), Expect = 9.510e-23
Identity = 77/199 (38.69%), Postives = 112/199 (56.28%), Query Frame = 0
Query:  116 TLARPIPSHEGKMEDEGKHLRSKNEIDPDKITVPSIKITVNARDEIVPVGKIVSSMESVVVVSTANWHPNEDARPSREMSSVKSPISTDLNSVSALDHGSALCFEDRRLLGLVDETFGPVECPFYVVRFNTVEERDAIGAEHGRMVYVVKEQSSWVRGSDVLSKGYDTSNWDDEECNVPDEYSDDEEERAAKQAQRRAR 314
            T A  +   EG M+     LR+KNE + + I +    I V A  +++ +GK+   M+  V++ +       +   S  M  V+S    D+   SALD GS +CF DR +LG + ETFG V  P+Y++RFN  EE   + A+ GR V+ V E S  VR  DV  KGYD+SN+ DEE     E+SDDE E  A+++++RAR
Sbjct:  310 TTALMMKDDEGPMDKAA--LRTKNEQNVNDIEIKKPTIQVTAAHKLLALGKVSGVMDKTVIIMSTE----AEKAKSSGMPCVES--ERDIAEASALDSGSIVCFGDRTVLGEIFETFGQVRSPYYIIRFNNEEEISEVNAKVGRDVFYVPELSKTVRAKDVHIKGYDSSNFFDEEVGNK-EFSDDEAEAEARRSRKRAR 499          
BLAST of Gcaud1264.t1 vs. uniprot
Match: A0A0S6X962_BLOB1 (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Fungal sp. (strain No.11243) TaxID=1603295 RepID=A0A0S6X962_BLOB1)

HSP 1 Score: 90.5 bits (223), Expect = 2.990e-15
Identity = 64/218 (29.36%), Postives = 108/218 (49.54%), Query Frame = 0
Query:  116 TLARPIPSHEGKMEDEG--------KHLRSKNEIDPDKITVPSIKITVNARDEIVPVGKIVSSMESVVVVSTANWHPNEDARPSREMSSVKSPISTDLNSVSALDHGSALCFEDRRLLGLVDETFGPVECPFYVVRFNTVEERDAIGAEHGRMVYVVKEQSSWVRGSDVLS-KGYDTSNWDDEECNVPD-EYSDDEEERAAKQAQRRARVQKRENGKD 323
            T A+ + + EG  +++G          LR+KNE++   +  P + IT   +  +VP+G + S +E+++++                                 L+ GS LC EDR ++G V +T GPV+ P Y V F   E  D +  ++G  ++ V+E S++V    +   KG D SN  DEE    + E+SDDE ERA KQA ++A++ ++   +D
Sbjct:  225 TAAKMLMAEEGGEDEDGPSAKSGNKSSLRTKNEVEAQVVPKPDVTITDTMK--VVPLGNVESIVENLILIK-----------------------GYTTGEYQVLEQGSVLCLEDRTVIGAVSDTLGPVQAPLYCVAFTNREAIDELSLQYGVTIFYVEEHSTFVFTKPLQELKGTDASNIHDEEIGDDEVEFSDDEAERAHKQAIKQAKINRKVGTRD 417          
BLAST of Gcaud1264.t1 vs. uniprot
Match: A0A3P3YH86_PLABS (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YH86_PLABS)

HSP 1 Score: 89.0 bits (219), Expect = 3.520e-15
Identity = 67/186 (36.02%), Postives = 96/186 (51.61%), Query Frame = 0
Query:  133 KHLRSKNEIDPDKITVPSIK-ITVNARDEIVPVGKIVSSMESVVVVSTANWHPNEDARPSREMSSVKSPISTDLNSVSALDHGSALCFEDRRLLGLVDETFGPVECPFYVVRFNTVEERDAIGAEHGRMVYVVKEQSSWVRGSDVLSKGYDTSNWDDEECNVPDEYSDDEEERAAKQAQRRARVQK 317
            K LR+ NEIDPD + +P  + I +++   +  +G I S +E  VV+        E A+P                    +D G AL   DR  LG VD+ FGPV+ PFY+VR   V   D +   +G  V+ V+E S+ +  + +  KG D S  +DEE     EYSDDEEE+ A+Q +R+A  QK
Sbjct:  142 KPLRTVNEIDPDTVEIPDRRAIPISSESTLREIGLISSFVEGTVVIMA-----KEGAQP--------------------IDIGGALALHDRTPLGYVDDVFGPVQSPFYLVR---VRADDDLSVSNGAAVFAVEELSALLEAAKLDRKGTDASYLNDEEDKNQVEYSDDEEEQRARQ-ERKASAQK 298          
BLAST of Gcaud1264.t1 vs. uniprot
Match: A0A7J7DI71_TRIWF (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DI71_TRIWF)

HSP 1 Score: 87.8 bits (216), Expect = 2.290e-14
Identity = 68/206 (33.01%), Postives = 108/206 (52.43%), Query Frame = 0
Query:  135 LRSKNEIDPDKITVPSIKITVNARDEIVPVGKIVSSMESVVVVSTANWHPNEDARPSREMSSVKSPISTDLNSVSALDHGSALCF-EDRRLLGLVDETFGPVECPFYVVRFNTVEERDAIGAEHGRMVYVVKEQSSWV-RGSDVLSKGYDTSNWDDEECNVPDEYSDDEEE-------RAAKQAQRRARVQKRENGKDNANELKRR 331
            +RSKNE+  D   VP++++++    +++PVG ++S M + V++     H                         + LD GS L   E R  LGLVDE FGPV+ P+YVVR+N+  E  A G   G ++  V++ ++ V    ++  KGYD S  +DEE +V +E+SDDE+E       + +K+   R   QK  N K++  +LK R
Sbjct:  288 IRSKNELQ-DLPPVPAVEVSLQQHHQLLPVGVVLSMMGAKVIIEGVEKH-------------------------NPLDEGSILWVTESRSPLGLVDEIFGPVKNPYYVVRYNSESEVPA-GIHEGSLISFVQDFANHVLNDKNLYKKGYDASGDNDEELSVDEEFSDDEKEAEYKRRLKTSKRGMARMDDQKLRNKKNDKRKLKNR 466          
BLAST of Gcaud1264.t1 vs. uniprot
Match: UPI0009E5D589 (H/ACA ribonucleoprotein complex non-core subunit NAF1-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E5D589)

HSP 1 Score: 87.4 bits (215), Expect = 2.630e-14
Identity = 66/179 (36.87%), Postives = 96/179 (53.63%), Query Frame = 0
Query:  135 LRSKNEIDPDKITVPSIKITVNARDEIVPVGKIVSSMESVVVVSTANWHPNEDARPSREMSSVKSPISTDLNSVSALDHGSALCFEDRRL-LGLVDETFGPVECPFYVVRFNTVEERDAIGAEHGRMVYVVKEQSSWV-RGSDVLSKGYDTSNWDDEECNVPDEYSDDEEERAAKQAQR 311
            +RSKNE++ D   VP +K+T+ A  +++PVG I S M + V++  +  H                         + L+ GS L   D RL LGLVDE FGPV+ P+Y+VR+NT EE  A G   G  +  V E +S +    ++  KGYD S  +DEE +   E+SDDE+E   K++ R
Sbjct:  200 IRSKNEVE-DLPPVPMVKVTLQASHQLLPVGVISSIMGNRVIIEGSVLH-------------------------NPLNEGSILWVMDTRLPLGLVDEIFGPVKNPYYIVRYNTEEEVPA-GIRVGVAIAFVAEFASQILNDKELYRKGYDASGENDEEVDNEVEFSDDEKEAECKKSLR 351          
BLAST of Gcaud1264.t1 vs. uniprot
Match: A0A8B7C883_PHODC (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7C883_PHODC)

HSP 1 Score: 87.4 bits (215), Expect = 3.150e-14
Identity = 74/222 (33.33%), Postives = 115/222 (51.80%), Query Frame = 0
Query:  125 EGKMEDEGKHLRSKNEIDPDKITVPSIKITVNARDEIVPVGKIVSSMES-VVVVSTANWHPNEDARPSREMSSVKSPISTDLNSVSALDHGSALCFEDRRL-LGLVDETFGPVECPFYVVRFNTVEERDA-IGAEHGRMVYVVKEQSSWVRGS-DVLSKGYDTSNWDDEECNVPDEYSDDEEERAAKQA---QRRARVQKRENGKDNANELKRRRLNTSYPK 339
            EG+ ED    ++SKNE++ +   VP I++T+    +++P+G I S + + VVV  + N +P                          L+ GS L   D R  LGLVDE FGPV+CP+YVVR+N+  E+D  +G   G  V  V E ++ +    D+  KGYD S  +DEE     E+SDDE+E   K++   ++R    KR+  + NA   K+ +   + P+
Sbjct:  304 EGEEEDVKGAIKSKNELE-ELPPVPQIEVTLQPHHQLLPIGAISSILGTRVVVEGSVNHNP--------------------------LNEGSILWVTDTRSPLGLVDEIFGPVKCPYYVVRYNS--EKDVLVGINQGTSVSFVMEFANKILNEKDLYRKGYDASGENDEEVTGEVEFSDDEKEAEYKRSLSQEKRGIEDKRQGNRQNAPRKKKTKSKGAEPR 496          
BLAST of Gcaud1264.t1 vs. uniprot
Match: A0A4D8Z922_SALSN (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=3 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8Z922_SALSN)

HSP 1 Score: 87.0 bits (214), Expect = 4.650e-14
Identity = 63/181 (34.81%), Postives = 95/181 (52.49%), Query Frame = 0
Query:  128 MEDE----GKHLRSKNEIDPDKITVPSIKITVNARDEIVPVGKIVSSMESVVVVSTANWHPNEDARPSREMSSVKSPISTDLNSVSALDHGSALCFEDRRLLGLVDETFGPVECPFYVVRFNTVEERDAIGAEHGRMVYVVKEQSSWV-RGSDVLSKGYDTSNWDDEECNVPDEYSDDEEE 303
            +EDE    G  ++SKNE++ D   VPS+ +T+    E +PVG ++S +++ V+V     H                     LN  S L        E R  LG++DE FGPV+ PFY+VR+N+ EE    G + G ++  V E +  V   +++  KGYD SN +DEE +   E+SDDE+E
Sbjct:  283 VEDEDGGGGGPIKSKNELE-DLPPVPSVNVTLEPHHETLPVGTVLSMIDAQVIVEGVEKHD-------------------PLNESSIL-----WITESRSPLGIIDEIFGPVKNPFYIVRYNS-EEEVPTGIQQGTLISFVAEFADHVLNNNNLYQKGYDASNENDEELSEDGEFSDDEKE 437          
BLAST of Gcaud1264.t1 vs. uniprot
Match: A0A5N6LNG3_9ASTR (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LNG3_9ASTR)

HSP 1 Score: 85.9 bits (211), Expect = 7.330e-14
Identity = 73/248 (29.44%), Postives = 115/248 (46.37%), Query Frame = 0
Query:  135 LRSKNEIDPDKITVPSIKITVNARDEIVPVGKIVSSMESVVVVSTANWHPNEDARPSREMSSVKSPISTDLNSVSALDHGSALCF-EDRRLLGLVDETFGPVECPFYVVRFNTVEERDAIGAEHGRMVYVVKEQSSWVRGSDVL-SKGYDTSNWDDEECNVPDEYSDDEEERAAKQ----------AQRRARVQKRENGKDNANELKRRRLNTSYPKCESSNTVEIYNKSVFSGAQHRRSRPRQGMIP 370
            +RS+NE+  D   VP + +T+    + +PVG ++S M S V+V     H                           L  GS L   E R  LG+VDE FGPV+ P+Y+VR+N+ E     G + G ++  V E + +V  ++ L  KGYD S  +DEEC+   E+SDDE+E   K+           ++  R++K +  ++   +LK    N   P   S + +       FS A +  S    G++P
Sbjct:  173 IRSRNEV-KDLPPVPPVTVTIQPHHQTLPVGVVLSIMSSQVIVEGLEEH-------------------------KPLSEGSILWVTESRTPLGVVDEIFGPVKNPYYIVRYNS-ETEIPTGIQQGSLISFVPEFADYVLNNNSLFKKGYDASGENDEECSEELEFSDDEKEAEYKRMLKMSKRGSSGEKNTRMKKDKKSRNRGGKLK----NDHQPSASSQSNISSSGAQAFSQAPNTMS---SGVLP 386          
BLAST of Gcaud1264.t1 vs. uniprot
Match: A0A1J7HBW8_LUPAN (H/ACA ribonucleoprotein complex non-core subunit NAF1 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A1J7HBW8_LUPAN)

HSP 1 Score: 85.9 bits (211), Expect = 7.540e-14
Identity = 63/189 (33.33%), Postives = 99/189 (52.38%), Query Frame = 0
Query:  131 EGKHLRSKNEIDPDKITVPSIKITVNARDEIVPVGKIVSSMESVVVVSTANWHPNEDARPSREMSSVKSPISTDLNSVSALDHGSALCF-EDRRLLGLVDETFGPVECPFYVVRFNTVEERDAIGAEHGRMVYVVKEQSSWV-RGSDVLSKGYDTSNWDDEECNVPDEYSDDEEERAAKQAQRRARVQK 317
            +G+ +RSKNE++ +   VP +++T+    ++ PVG ++S + + V+V     H                           L+ GS L   E+R+ LGLVDE FGPV+ P+Y+VR+N+  E    G   G ++  V E + +V    DV  KGYD S  +DEE +   E+SDDE+E   ++ QR A+  K
Sbjct:  202 KGEPIRSKNELE-NLPPVPPVEVTLEPHHQVQPVGVVMSIVGAQVIVEGVEKH-------------------------EPLNEGSILWMTENRKPLGLVDEIFGPVKTPYYIVRYNSESEVPE-GIHAGTLISFVPEFADYVLNNKDVYKKGYDASGANDEELSDEYEFSDDEKEAEYRRMQRTAKRDK 363          
The following BLAST results are available for this feature:
BLAST of Gcaud1264.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXH5_9FLOR2.410e-5356.91H/ACA ribonucleoprotein complex non-core subunit N... [more]
R7QEQ3_CHOCR9.510e-2338.69H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A0S6X962_BLOB12.990e-1529.36H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A3P3YH86_PLABS3.520e-1536.02H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A7J7DI71_TRIWF2.290e-1433.01H/ACA ribonucleoprotein complex non-core subunit N... [more]
UPI0009E5D5892.630e-1436.87H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A8B7C883_PHODC3.150e-1433.33H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A4D8Z922_SALSN4.650e-1434.81H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A5N6LNG3_9ASTR7.330e-1429.44H/ACA ribonucleoprotein complex non-core subunit N... [more]
A0A1J7HBW8_LUPAN7.540e-1433.33H/ACA ribonucleoprotein complex non-core subunit N... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 299..319
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..335
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 293..335
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 597..625
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 597..615
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..105
IPR007504H/ACA ribonucleoprotein complex, subunit Gar1/Naf1PFAMPF04410Gar1coord: 207..271
e-value: 2.6E-14
score: 52.8
IPR038664H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domainGENE3D2.40.10.230Probable tRNA pseudouridine synthase domaincoord: 133..265
e-value: 5.1E-25
score: 89.7
IPR040309H/ACA ribonucleoprotein complex non-core subunit Naf1PANTHERPTHR31633H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1coord: 40..606
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 210..254

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3394_length_3526_cov_4.820670contigNODE_3394_length_3526_cov_4.820670:579..2456 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1264.t1Gcaud1264.t1Gracilaria caudata M_176_S67 malemRNANODE_3394_length_3526_cov_4.820670 579..2456 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1264.t1 ID=Gcaud1264.t1|Name=Gcaud1264.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=626bp
MVMTMAIKSRHSCEEECSPALEIVNAILAKSTRTPTPDVVEDLPHAITGL
SSKNVIRQSAGSENSDASHSSSESAADSDSDSESGSSSASSSSTTSSSSL
TLGSKQKDDRQNRKGTLARPIPSHEGKMEDEGKHLRSKNEIDPDKITVPS
IKITVNARDEIVPVGKIVSSMESVVVVSTANWHPNEDARPSREMSSVKSP
ISTDLNSVSALDHGSALCFEDRRLLGLVDETFGPVECPFYVVRFNTVEER
DAIGAEHGRMVYVVKEQSSWVRGSDVLSKGYDTSNWDDEECNVPDEYSDD
EEERAAKQAQRRARVQKRENGKDNANELKRRRLNTSYPKCESSNTVEIYN
KSVFSGAQHRRSRPRQGMIPNLTRRSESHDLLRCGGGRTCGPIRNTPQFG
NHWHSASVAPNMPSSEAVASSEFYAQARPTLPHNMRTQRGYAEGPLIGPA
CPSPNGPGQQVYHHQGLSGVVPTVYNAYQQSMGTALPGVNVGVPHYHNGI
YGRYGNNGEDSAQPHYNQVPAPHWYGNAPPQMRPRANAVELNQSGMLYGG
PGENERSMFYRGPTGHQHTYERTTGQIQPPGVNQYPAVGFSTYAAENVTS
RQANPGASLDPHHQQTVSFPPPRGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007504H/ACA_rnp_Gar1/Naf1
IPR038664Gar1/Naf1_Cbf5-bd_sf
IPR040309Naf1
IPR009000Transl_B-barrel_sf