Gcaud1264.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1264.t1
Unique Name	Gcaud1264.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	626

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3394_length_3526_cov_4.820670	contig	NODE_3394_length_3526_cov_4.820670:579..2456 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	327079.R9PCI3
PFAMs	Gar1
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14763
GOs	GO:0000491,GO:0000493,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030515,GO:0031974,GO:0031981,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
Evalue	3.29e-14
EggNOG OGs	KOG2236@1\|root,KOG2236@2759\|Eukaryota,38EWH@33154\|Opisthokonta,3NY8R@4751\|Fungi,3V1KU@5204\|Basidiomycota,3N0XH@452284\|Ustilaginomycotina
Description	Gar1/Naf1 RNA binding region
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1264	Gcaud1264	Gracilaria caudata M_176_S67 male	gene	NODE_3394_length_3526_cov_4.820670 579..2456 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1264.t1.start1	Gcaud1264.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3394_length_3526_cov_4.820670 579..581 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1264.t1.CDS1	Gcaud1264.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3394_length_3526_cov_4.820670 579..2456 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1264.t1.exon1	Gcaud1264.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3394_length_3526_cov_4.820670 579..2456 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1264.t1.stop1	Gcaud1264.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3394_length_3526_cov_4.820670 2454..2456 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1264.t1	Gcaud1264.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3394_length_3526_cov_4.820670 579..2456 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3394_length_3526_cov_4.820670:579..2456+
coding sequence from alignment at NODE_3394_length_3526_cov_4.820670:579..2456+

mRNA sequence

>Gcaud1264.t1 ID=Gcaud1264.t1|Name=Gcaud1264.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=626bp
MVMTMAIKSRHSCEEECSPALEIVNAILAKSTRTPTPDVVEDLPHAITGL
SSKNVIRQSAGSENSDASHSSSESAADSDSDSESGSSSASSSSTTSSSSL
TLGSKQKDDRQNRKGTLARPIPSHEGKMEDEGKHLRSKNEIDPDKITVPS
IKITVNARDEIVPVGKIVSSMESVVVVSTANWHPNEDARPSREMSSVKSP
ISTDLNSVSALDHGSALCFEDRRLLGLVDETFGPVECPFYVVRFNTVEER
DAIGAEHGRMVYVVKEQSSWVRGSDVLSKGYDTSNWDDEECNVPDEYSDD
EEERAAKQAQRRARVQKRENGKDNANELKRRRLNTSYPKCESSNTVEIYN
KSVFSGAQHRRSRPRQGMIPNLTRRSESHDLLRCGGGRTCGPIRNTPQFG
NHWHSASVAPNMPSSEAVASSEFYAQARPTLPHNMRTQRGYAEGPLIGPA
CPSPNGPGQQVYHHQGLSGVVPTVYNAYQQSMGTALPGVNVGVPHYHNGI
YGRYGNNGEDSAQPHYNQVPAPHWYGNAPPQMRPRANAVELNQSGMLYGG
PGENERSMFYRGPTGHQHTYERTTGQIQPPGVNQYPAVGFSTYAAENVTS
RQANPGASLDPHHQQTVSFPPPRGR*

spliced messenger RNA

>Gcaud1264.t1 ID=Gcaud1264.t1|Name=Gcaud1264.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1878bp|location=Sequence derived from alignment at NODE_3394_length_3526_cov_4.820670:579..2456+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATGACAATGGCCATCAAATCGCGGCATTCGTGTGAAGAAGAATG
TTCTCCAGCCCTTGAAATAGTGAATGCGATACTCGCGAAGTCTACCAGAA
CCCCCACTCCTGATGTGGTGGAAGACTTGCCACATGCAATCACGGGCTTG
TCATCGAAAAATGTCATCCGGCAAAGTGCAGGATCCGAGAACTCAGACGC
TTCGCATTCTTCAtcggaatccgctgcggactcagactccgactccgaat
ctggctcTTCATCAGCTTCTTCTTCTTCGACCACCTCCTCATCTTCCTTA
ACCTTAGGTTCGAAACAAAAGGACGACCGCCAGAACAGGAAAGGAACACT
AGCGCGTCCTATTCCTAGTCACGAAGGCAAGATGGAAGATGAAGGAAAAC
ATTTACGTTCAAAGAATGAAATCGACCCAGACAAGATAACCGTTCCATCC
ATCAAGATCACAGTCAACGCCCGAGATGAAATAGTTCCCGTCGGTAAAAT
AGTTTCGTCCATGGAATCCGTTGTCGTAGTTTCTACAGCGAACTGGCACC
CTAACGAGGACGCCAGGCCGAGCCGAGAAATGTCATCTGTTAAGTCTCCA
ATTAGTACTGATCTGAACTCAGTCAGTGCTCTGGATCACGGTTCCGCGCT
CTGTTTTGAAGATCGAAGACTTCTTGGATTAGTTGACGAGACTTTCGGTC
CAGTCGAATGTCCTTTCTATGTTGTCAGATTCAATACTGTGGAGGAGCGC
GATGCAATCGGGGCTGAACATGGTCGCATGGTATATGTAGTGAAAGAGCA
GAGCTCTTGGGTGAGAGGCAGTGATGTGCTTAGTAAGGGCTATGACACTA
GCAATTGGGATGATGAAGAGTGTAATGTTCCAGACGAGTACTCCGACGAC
GAGGAAGAAAGAGCTGCGAAACAAGCGCAGAGACGGGCCCGGGTACAAAA
ACGGGAAAATGGTAAGGACAATGCGAACGAGCTGAAGCGCCGGAGATTGA
ATACCTCTTACCCGAAGTGTGAATCGAGCAACACAGTTGAAATATACAAC
AAGAGTGTTTTTTCCGGTGCTCAACATAGACGATCCAGACCCAGGCAAGG
AATGATTCCCAATCTCACCCGTAGGAGTGAATCTCATGACCTACTGAGAT
GTGGCGGTGGTCGCACCTGCGGTCCCATTCGTAACACTCCTCAGTTTGGG
AATCACTGGCACAGCGCATCTGTAGCACCTAACATGCCTAGCTCGGAAGC
AGTCGCATCTTCCGAATTTTACGCACAAGCAAGACCTACACTTCCGCACA
ACATGCGAACGCAGAGAGGCTACGCTGAAGGTCCTCTAATTGGCCCTGCT
TGTCCTTCTCCAAATGGACCAGGGCAGCAGGTATATCATCATCAAGGACT
GTCAGGAGTAGTCCCCACTGTCTACAATGCGTACCAACAATCTATGGGAA
CTGCACTGCCTGGCGTGAATGTTGGGGTACCACATTATCACAATGGAATA
TATGGCCGTTACGGTAATAATGGAGAGGATAGTGCTCAACCACATTACAA
TCAGGTTCCAGCTCCGCATTGGTATGGAAATGCGCCACCTCAAATGCGTC
CCCGAGCGAATGCTGTAGAACTTAATCAAAGCGGTATGCTTTACGGAGGA
CCAGGGGAGAACGAGCGCAGTATGTTCTACAGGGGACCAACGGGCCACCA
ACATACATACGAAAGGACGACCGGCCAAATTCAGCCGCCTGGAGTCAACC
AATATCCTGCAGTAGGCTTTTCAACCTACGCTGCAGAGAACGTGACATCA
AGACAAGCGAATCCAGGAGCAAGCTTAGATCCACATCATCAGCAAACAGT
CAGTTTCCCGCCACCCAGAGGTCGATAA

protein sequence of Gcaud1264.t1

>Gcaud1264.t1 ID=Gcaud1264.t1|Name=Gcaud1264.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=626bp
MVMTMAIKSRHSCEEECSPALEIVNAILAKSTRTPTPDVVEDLPHAITGL
SSKNVIRQSAGSENSDASHSSSESAADSDSDSESGSSSASSSSTTSSSSL
TLGSKQKDDRQNRKGTLARPIPSHEGKMEDEGKHLRSKNEIDPDKITVPS
IKITVNARDEIVPVGKIVSSMESVVVVSTANWHPNEDARPSREMSSVKSP
ISTDLNSVSALDHGSALCFEDRRLLGLVDETFGPVECPFYVVRFNTVEER
DAIGAEHGRMVYVVKEQSSWVRGSDVLSKGYDTSNWDDEECNVPDEYSDD
EEERAAKQAQRRARVQKRENGKDNANELKRRRLNTSYPKCESSNTVEIYN
KSVFSGAQHRRSRPRQGMIPNLTRRSESHDLLRCGGGRTCGPIRNTPQFG
NHWHSASVAPNMPSSEAVASSEFYAQARPTLPHNMRTQRGYAEGPLIGPA
CPSPNGPGQQVYHHQGLSGVVPTVYNAYQQSMGTALPGVNVGVPHYHNGI
YGRYGNNGEDSAQPHYNQVPAPHWYGNAPPQMRPRANAVELNQSGMLYGG
PGENERSMFYRGPTGHQHTYERTTGQIQPPGVNQYPAVGFSTYAAENVTS
RQANPGASLDPHHQQTVSFPPPRGR*

mRNA from alignment at NODE_3394_length_3526_cov_4.820670:579..2456+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1264.t1 ID=Gcaud1264.t1|Name=Gcaud1264.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1878bp|location=Sequence derived from alignment at NODE_3394_length_3526_cov_4.820670:579..2456+ (Gracilaria caudata M_176_S67 male)
ATGGTCATGACAATGGCCATCAAATCGCGGCATTCGTGTGAAGAAGAATG
TTCTCCAGCCCTTGAAATAGTGAATGCGATACTCGCGAAGTCTACCAGAA
CCCCCACTCCTGATGTGGTGGAAGACTTGCCACATGCAATCACGGGCTTG
TCATCGAAAAATGTCATCCGGCAAAGTGCAGGATCCGAGAACTCAGACGC
TTCGCATTCTTCAtcggaatccgctgcggactcagactccgactccgaat
ctggctcTTCATCAGCTTCTTCTTCTTCGACCACCTCCTCATCTTCCTTA
ACCTTAGGTTCGAAACAAAAGGACGACCGCCAGAACAGGAAAGGAACACT
AGCGCGTCCTATTCCTAGTCACGAAGGCAAGATGGAAGATGAAGGAAAAC
ATTTACGTTCAAAGAATGAAATCGACCCAGACAAGATAACCGTTCCATCC
ATCAAGATCACAGTCAACGCCCGAGATGAAATAGTTCCCGTCGGTAAAAT
AGTTTCGTCCATGGAATCCGTTGTCGTAGTTTCTACAGCGAACTGGCACC
CTAACGAGGACGCCAGGCCGAGCCGAGAAATGTCATCTGTTAAGTCTCCA
ATTAGTACTGATCTGAACTCAGTCAGTGCTCTGGATCACGGTTCCGCGCT
CTGTTTTGAAGATCGAAGACTTCTTGGATTAGTTGACGAGACTTTCGGTC
CAGTCGAATGTCCTTTCTATGTTGTCAGATTCAATACTGTGGAGGAGCGC
GATGCAATCGGGGCTGAACATGGTCGCATGGTATATGTAGTGAAAGAGCA
GAGCTCTTGGGTGAGAGGCAGTGATGTGCTTAGTAAGGGCTATGACACTA
GCAATTGGGATGATGAAGAGTGTAATGTTCCAGACGAGTACTCCGACGAC
GAGGAAGAAAGAGCTGCGAAACAAGCGCAGAGACGGGCCCGGGTACAAAA
ACGGGAAAATGGTAAGGACAATGCGAACGAGCTGAAGCGCCGGAGATTGA
ATACCTCTTACCCGAAGTGTGAATCGAGCAACACAGTTGAAATATACAAC
AAGAGTGTTTTTTCCGGTGCTCAACATAGACGATCCAGACCCAGGCAAGG
AATGATTCCCAATCTCACCCGTAGGAGTGAATCTCATGACCTACTGAGAT
GTGGCGGTGGTCGCACCTGCGGTCCCATTCGTAACACTCCTCAGTTTGGG
AATCACTGGCACAGCGCATCTGTAGCACCTAACATGCCTAGCTCGGAAGC
AGTCGCATCTTCCGAATTTTACGCACAAGCAAGACCTACACTTCCGCACA
ACATGCGAACGCAGAGAGGCTACGCTGAAGGTCCTCTAATTGGCCCTGCT
TGTCCTTCTCCAAATGGACCAGGGCAGCAGGTATATCATCATCAAGGACT
GTCAGGAGTAGTCCCCACTGTCTACAATGCGTACCAACAATCTATGGGAA
CTGCACTGCCTGGCGTGAATGTTGGGGTACCACATTATCACAATGGAATA
TATGGCCGTTACGGTAATAATGGAGAGGATAGTGCTCAACCACATTACAA
TCAGGTTCCAGCTCCGCATTGGTATGGAAATGCGCCACCTCAAATGCGTC
CCCGAGCGAATGCTGTAGAACTTAATCAAAGCGGTATGCTTTACGGAGGA
CCAGGGGAGAACGAGCGCAGTATGTTCTACAGGGGACCAACGGGCCACCA
ACATACATACGAAAGGACGACCGGCCAAATTCAGCCGCCTGGAGTCAACC
AATATCCTGCAGTAGGCTTTTCAACCTACGCTGCAGAGAACGTGACATCA
AGACAAGCGAATCCAGGAGCAAGCTTAGATCCACATCATCAGCAAACAGT
CAGTTTCCCGCCACCCAGAGGTCGATAA

Coding sequence (CDS) from alignment at NODE_3394_length_3526_cov_4.820670:579..2456+

>Gcaud1264.t1 ID=Gcaud1264.t1|Name=Gcaud1264.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1878bp|location=Sequence derived from alignment at NODE_3394_length_3526_cov_4.820670:579..2456+ (Gracilaria caudata M_176_S67 male)
ATGGTCATGACAATGGCCATCAAATCGCGGCATTCGTGTGAAGAAGAATG
TTCTCCAGCCCTTGAAATAGTGAATGCGATACTCGCGAAGTCTACCAGAA
CCCCCACTCCTGATGTGGTGGAAGACTTGCCACATGCAATCACGGGCTTG
TCATCGAAAAATGTCATCCGGCAAAGTGCAGGATCCGAGAACTCAGACGC
TTCGCATTCTTCAtcggaatccgctgcggactcagactccgactccgaat
ctggctcTTCATCAGCTTCTTCTTCTTCGACCACCTCCTCATCTTCCTTA
ACCTTAGGTTCGAAACAAAAGGACGACCGCCAGAACAGGAAAGGAACACT
AGCGCGTCCTATTCCTAGTCACGAAGGCAAGATGGAAGATGAAGGAAAAC
ATTTACGTTCAAAGAATGAAATCGACCCAGACAAGATAACCGTTCCATCC
ATCAAGATCACAGTCAACGCCCGAGATGAAATAGTTCCCGTCGGTAAAAT
AGTTTCGTCCATGGAATCCGTTGTCGTAGTTTCTACAGCGAACTGGCACC
CTAACGAGGACGCCAGGCCGAGCCGAGAAATGTCATCTGTTAAGTCTCCA
ATTAGTACTGATCTGAACTCAGTCAGTGCTCTGGATCACGGTTCCGCGCT
CTGTTTTGAAGATCGAAGACTTCTTGGATTAGTTGACGAGACTTTCGGTC
CAGTCGAATGTCCTTTCTATGTTGTCAGATTCAATACTGTGGAGGAGCGC
GATGCAATCGGGGCTGAACATGGTCGCATGGTATATGTAGTGAAAGAGCA
GAGCTCTTGGGTGAGAGGCAGTGATGTGCTTAGTAAGGGCTATGACACTA
GCAATTGGGATGATGAAGAGTGTAATGTTCCAGACGAGTACTCCGACGAC
GAGGAAGAAAGAGCTGCGAAACAAGCGCAGAGACGGGCCCGGGTACAAAA
ACGGGAAAATGGTAAGGACAATGCGAACGAGCTGAAGCGCCGGAGATTGA
ATACCTCTTACCCGAAGTGTGAATCGAGCAACACAGTTGAAATATACAAC
AAGAGTGTTTTTTCCGGTGCTCAACATAGACGATCCAGACCCAGGCAAGG
AATGATTCCCAATCTCACCCGTAGGAGTGAATCTCATGACCTACTGAGAT
GTGGCGGTGGTCGCACCTGCGGTCCCATTCGTAACACTCCTCAGTTTGGG
AATCACTGGCACAGCGCATCTGTAGCACCTAACATGCCTAGCTCGGAAGC
AGTCGCATCTTCCGAATTTTACGCACAAGCAAGACCTACACTTCCGCACA
ACATGCGAACGCAGAGAGGCTACGCTGAAGGTCCTCTAATTGGCCCTGCT
TGTCCTTCTCCAAATGGACCAGGGCAGCAGGTATATCATCATCAAGGACT
GTCAGGAGTAGTCCCCACTGTCTACAATGCGTACCAACAATCTATGGGAA
CTGCACTGCCTGGCGTGAATGTTGGGGTACCACATTATCACAATGGAATA
TATGGCCGTTACGGTAATAATGGAGAGGATAGTGCTCAACCACATTACAA
TCAGGTTCCAGCTCCGCATTGGTATGGAAATGCGCCACCTCAAATGCGTC
CCCGAGCGAATGCTGTAGAACTTAATCAAAGCGGTATGCTTTACGGAGGA
CCAGGGGAGAACGAGCGCAGTATGTTCTACAGGGGACCAACGGGCCACCA
ACATACATACGAAAGGACGACCGGCCAAATTCAGCCGCCTGGAGTCAACC
AATATCCTGCAGTAGGCTTTTCAACCTACGCTGCAGAGAACGTGACATCA
AGACAAGCGAATCCAGGAGCAAGCTTAGATCCACATCATCAGCAAACAGT
CAGTTTCCCGCCACCCAGAGGTCGATAA