Gcaud122.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud122.t1
Unique NameGcaud122.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length307
Homology
BLAST of Gcaud122.t1 vs. uniprot
Match: A0A2V3IMH3_9FLOR (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMH3_9FLOR)

HSP 1 Score: 195 bits (496), Expect = 4.270e-53
Identity = 108/274 (39.42%), Postives = 151/274 (55.11%), Query Frame = 0
Query:    2 NVLEEGLKLSCTVLTKAQRCVDWFILRQFRVTATLSGAALLRSKDVRDVLGLSPQRGDTTQAQANVMHELTTAWFSTKRSTETMIRGTTNENVVRAALRQLPFITGLFEAGMLGVKGENHFACSPDGVALIDLTIVRDQLEANGAVHVTGMHFGDMYLGLAAVEIKTRVAKSTVGSAVTHATESLIVMRIGAKELTEYVPAEHLCQILHQMFVLNVNLCLYVCVAETGFLYEVLIICDDEQRVLVGNTLRCCTESGVKWAHEETIVFPDDIDTN 275
            +V+   L+  C VLT +QRC DWF+LRQFRVT T +G  L+ S   R +L L    G                WFSTK STE M+RG+ NE  V +ALR  PF+T +FE GML VK     +CSPDG+A++D +I     ++ G   VT       ++ L  VEIKTRVA S+VG AV  +   +++   G     +Y+P  H+ Q++ Q+FVL + + +YV  AETG LY V+  C +    +  + L       VKWAHE+T+  P  +  N
Sbjct:  553 DVVSVFLRERCEVLTVSQRCADWFVLRQFRVTGTNAGLVLMSSPCFRSILRLPASSGTEETTMPQWFERFYKGWFSTKTSTEAMMRGSANECAVLSALRAKPFVTAVFEVGMLAVKERRFLSCSPDGIAVLDTSIY----DSEGVGEVTMQDGEGNHIILGCVEIKTRVADSSVGEAVLLSCPDVVLCEAGNDTFHKYIPQGHMAQLMQQVFVLGLRVGIYVAAAETGILYIVVYRCSEMVLRMCEDVLMDIASPIVKWAHEDTLTIPSFVTQN 822          
BLAST of Gcaud122.t1 vs. uniprot
Match: A0A2V3ID74_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID74_9FLOR)

HSP 1 Score: 187 bits (475), Expect = 7.560e-50
Identity = 110/285 (38.60%), Postives = 152/285 (53.33%), Query Frame = 0
Query:    2 NVLEEGLKLSCTVLTKAQRCVDWFILRQFRVTATLSGAALLRSKDVRDVLGLSPQRGDTTQAQANVMHELTTAWFSTKRSTETMIRGTTNENVVRAALRQLPFITGLFEAGMLGVKGENHFACSPDGVALIDLTIVRDQLEANGAVHVTGMHFGDMYLGLAAVEIKTRVAKSTVGSAVTHATESLIVMRIGAKELTEYVPAEHLCQILHQMFVLNVNLCLYVCVAETGFLYEVLIICDDEQRVLVGNTLRCCTESGVKWAHEETIVFPDDIDTN-MRSLLQSKNF 285
            +V+   L+  C VLT +Q C DWF+LRQFRV  T +G  L+ S   R +L L    G       +        WFSTK STE M+RG+ NE  V +ALR  PF+T +FE GML VK     ACSPDG+A++D +I     ++ G   VT        + LA VEIKTR+A S+VG AV  +   +++   G     +Y+P  H+ QI+ Q+FVL + + +YV  AETG  Y V+  C +       + L       VKWAHE+T+  P  +     R+LL    F
Sbjct:  424 DVVSVFLRERCEVLTVSQSCADWFVLRQFRVAGTNAGLVLMSSPCFRSILRLPASSGTEETTIPHCFERFYKGWFSTKTSTEAMMRGSANECAVLSALRAKPFVTAVFEVGMLAVKERRFLACSPDGIAVLDTSIY----DSEGVGEVTMQDCEGNDIILACVEIKTRMADSSVGEAVLLSCPDVMLCEAGDDTFHKYIPQGHMAQIMQQVFVLGLRVGIYVAAAETGIPYIVVYRCSEMVLRTCEDVLMDIASPIVKWAHEDTLTIPSFVTAECQRTLLTRHKF 704          
BLAST of Gcaud122.t1 vs. uniprot
Match: A0A2V3ILZ8_9FLOR (YqaJ domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILZ8_9FLOR)

HSP 1 Score: 177 bits (450), Expect = 4.840e-47
Identity = 107/286 (37.41%), Postives = 155/286 (54.20%), Query Frame = 0
Query:    2 NVLEEGLKLSCTVLTKAQRCVDWFILRQFRVTATLSGAALLRSKDVRDVLGLSPQRGDTTQAQANVMHELTTAWFSTKRSTETMIRGTTNENVVRAALRQLPFITGLFEAGMLGVKGENHFACSPDGVALI---DLTIVRDQLEANGAVHVTGMHFGDMYLGLAAVEIKTRVAKSTVGSAVTHATESLIVMRIGAKELTEYVPAEHLCQILHQMFVLNVNLCLYVCVAETGFLYEVLIICDDEQRVLVGNTLRCCTESGVKWAHEE-TIVFPDDIDTNMRSLLQSK 283
            +V+E  +   C+VLT  QRC DWF+LRQFRVT T +G  L  +   R+++GLS         Q +++  + T WF   RSTE M+RGT NE  V A+L+   F+   +  GML +K +   ACSPDG+A+I   DL +  ++ E                  L +VEIKT VA+S++  A+  AT  L+   +G +    Y+PAEH+ QILHQM VL VN  +YV  +E+G +Y VL+ C++       + L       V WAH+   +  P   DT    +LQS+
Sbjct:  153 DVIERHILDHCSVLTLDQRCADWFVLRQFRVTGTSAGKILHANDAFREMVGLSEPTCTEQTLQQSLLSFVQT-WFGGGRSTEPMMRGTANEPAVVASLKLKAFVQAFYSCGMLSMKAKPWLACSPDGIAIIELLDLGLCSEESETESTQ-------------LCSVEIKTNVAQSSLDRALGLATADLVTCEVGDQSFRRYIPAEHIGQILHQMLVLAVNYVIYVSCSESGIMYTVLVHCNNSVLDTCLSALNAIALPVVSWAHQPGPLQIPSFSDTETTKVLQSR 424          
BLAST of Gcaud122.t1 vs. uniprot
Match: A0A2V3INT2_9FLOR (YqaJ domain-containing protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INT2_9FLOR)

HSP 1 Score: 178 bits (452), Expect = 9.830e-47
Identity = 107/286 (37.41%), Postives = 155/286 (54.20%), Query Frame = 0
Query:    2 NVLEEGLKLSCTVLTKAQRCVDWFILRQFRVTATLSGAALLRSKDVRDVLGLSPQRGDTTQAQANVMHELTTAWFSTKRSTETMIRGTTNENVVRAALRQLPFITGLFEAGMLGVKGENHFACSPDGVALI---DLTIVRDQLEANGAVHVTGMHFGDMYLGLAAVEIKTRVAKSTVGSAVTHATESLIVMRIGAKELTEYVPAEHLCQILHQMFVLNVNLCLYVCVAETGFLYEVLIICDDEQRVLVGNTLRCCTESGVKWAHEE-TIVFPDDIDTNMRSLLQSK 283
            +V+E  +   C+VLT  QRC DWF+LRQFRVT T +G  L  +   R+++GLS         Q +++  + T WF   RSTE M+RGT NE  V A+L+   F+   +  GML +K +   ACSPDG+A+I   DL +  ++ E                  L +VEIKT VA+S++  A+  AT  L+   +G +    Y+PAEH+ QILHQM VL VN  +YV  +E+G +Y VL+ C++       + L       V WAH+   +  P   DT    +LQS+
Sbjct:  523 DVIERHILDHCSVLTLDQRCADWFVLRQFRVTGTSAGKILHANDAFREMVGLSEPTCTEQTLQQSLLSFVQT-WFGGGRSTEPMMRGTANEPAVVASLKSKAFVQAFYSCGMLSMKAKPWLACSPDGIAIIELLDLGLCSEESETESTQ-------------LCSVEIKTNVAQSSLDRALGLATADLVTCEVGDQSFRRYIPAEHIGQILHQMLVLAVNYVIYVSCSESGIMYTVLVHCNNSVLDTCLSALNAIALPVVSWAHQPGPLQIPSFSDTETTKVLQSR 794          
BLAST of Gcaud122.t1 vs. uniprot
Match: A0A2V3IMJ3_9FLOR (YqaJ domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMJ3_9FLOR)

HSP 1 Score: 177 bits (448), Expect = 1.850e-46
Identity = 106/286 (37.06%), Postives = 154/286 (53.85%), Query Frame = 0
Query:    2 NVLEEGLKLSCTVLTKAQRCVDWFILRQFRVTATLSGAALLRSKDVRDVLGLSPQRGDTTQAQANVMHELTTAWFSTKRSTETMIRGTTNENVVRAALRQLPFITGLFEAGMLGVKGENHFACSPDGVALI---DLTIVRDQLEANGAVHVTGMHFGDMYLGLAAVEIKTRVAKSTVGSAVTHATESLIVMRIGAKELTEYVPAEHLCQILHQMFVLNVNLCLYVCVAETGFLYEVLIICDDEQRVLVGNTLRCCTESGVKWAHEE-TIVFPDDIDTNMRSLLQSK 283
            +V+E  +   C+VLT  QRC DWF+LRQFRVT T +G  L  +   R+++GLS         Q +++  + T WF   RSTE M+RGT NE  V A+L+   F+   +  GML +K +   ACSPDG+A+I   DL +  ++ E                  L +VEIKT VA+S++  A+   T  L+   +G +    Y+PAEH+ QILHQM VL VN  +YV  +E+G +Y VL+ C++       + L       V WAH+   +  P   DT    +LQS+
Sbjct:  523 DVIERHILDHCSVLTLDQRCADWFVLRQFRVTGTSAGKILHANDAFREMVGLSEPTCTEQTLQQSLLSFVQT-WFGGGRSTEPMMRGTANEPAVVASLKSKAFVQAFYSCGMLSMKAKPWLACSPDGIAIIELLDLGLCSEESETESTQ-------------LCSVEIKTNVAQSSLDRALGLTTADLVTCEVGDQSFRRYIPAEHIGQILHQMLVLAVNYVIYVSCSESGIMYTVLVHCNNSVLDTCLSALNAIALPVVSWAHQPGPLQIPSFSDTETTKVLQSR 794          
BLAST of Gcaud122.t1 vs. uniprot
Match: A0A2V3ISW5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISW5_9FLOR)

HSP 1 Score: 146 bits (369), Expect = 1.470e-36
Identity = 90/229 (39.30%), Postives = 125/229 (54.59%), Query Frame = 0
Query:    4 LEEGLKLSCTVLTKAQRCVDWFILRQFRVTATLSGAALLRSKDVRDVLGLSPQRGDTT-QAQANVMHELTTAWFSTKRSTETMIRGTTNENVVRAALRQLPFITGLFEAGMLGVKGENHFACSPDGVALIDLTIVRDQLEANGAVHVTGMHFGDMYLGLAAVEIKTRVAKSTVGSAVTHATESLIVMRIGAKELTEYVPAEHLCQILHQMFVLNVNLCLYVCVAETGFL 231
            LE+ ++ +C  LT  QRC DWF+LRQ  VT T  G  LL S+     LG+   R ++T +    + ++   A FS+KRSTE +IRGT NE+ V A LR LPF+  +FEAG L  K   H ACSPDG+ L+    +     A  A     +   D    L  VEIKTRVA S +G +VT +    ++  +   +   Y P +H+ QILH + V  ++  +YV   ETG L
Sbjct:  300 LEQVIESTCVPLTVRQRCADWFLLRQGSVTGTNDGLKLLSSETAESALGIVGSRRESTLEDWFKLSYD---ARFSSKRSTEAIIRGTANEDAVLATLRALPFVENVFEAGWLAQKDAPHLACSPDGIVLLKKATLHCFSSAV-ASDAGPVRSSDNTFVLGTVEIKTRVAVSLLGQSVTVSKSEQVLCELVDAQFHTYFPEDHMAQILHHLLVPGLSCAVYVAATETGIL 524          
BLAST of Gcaud122.t1 vs. uniprot
Match: R7QG12_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG12_CHOCR)

HSP 1 Score: 125 bits (313), Expect = 1.990e-28
Identity = 72/191 (37.70%), Postives = 103/191 (53.93%), Query Frame = 0
Query:    2 NVLEEGLKLSCTVLTKAQRCVDWFILRQFRVTATLSGAALLRSKDVRDVLGLSPQRGDTTQAQANVMHELTTAWFSTKRSTETMIRGTTNENVVRAALRQLPFITGLFEAGMLGVKGENHFACSPDGVALIDLTIVRDQLEANGAVHVTGMHFGDMYLGLAAVEIKTRVAKSTVGSAVTHATESLIVMRIG 192
            +++E  L   C+VL   QRC DWF+LRQFR+T T +G  LL    VR+ +GL  ++G      +  +  L+  WF   RSTE M RG+ NE  V AAL   PF+  ++E GML     +  ACSPDG+ALID           G + ++       ++ LA+VEIKT V  S++  A+   T  +   R+G
Sbjct:  463 DMVEHLLLQRCSVLAVGQRCADWFVLRQFRLTGTSAGTILLTDSTVRECVGLPQRQGFDEITLSERLKSLSQTWFGASRSTEAMKRGSMNERGVFAALSSKPFVQAVYECGMLSRADADWMACSPDGIALID----------TGQLGISEDVAAHSWMDLASVEIKTNVGVSSLDRAIGMETVDVKTCRVG 643          
BLAST of Gcaud122.t1 vs. uniprot
Match: A0A2V3IT75_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT75_9FLOR)

HSP 1 Score: 104 bits (259), Expect = 1.850e-21
Identity = 64/174 (36.78%), Postives = 91/174 (52.30%), Query Frame = 0
Query:  113 MLGVKGENHFACSPDGVALIDLTIVRDQLEANGAVHVTGMHFGDMYLGLAAVEIKTRVAKSTVGSAVTHATESLIVMRIGAKELTEYVPAEHLCQILHQMFVLNVNLCLYVCVAETGFLYEVLIICDDEQRVLVGNTLRCCTESGVKWAHEETIVFPDDIDTN-MRSLLQSKNF 285
            ML VK     ACSPDG+A++D +I     ++ G   VT        + LA VEIKTRVA S+VG AV  +   +++   G     +Y+P  H+ QI+ Q+FVL + + +YV  AETG LY V+  C +       + L       VKWAHE+T+  P  +     R+LL    F
Sbjct:    1 MLAVKERRFLACSPDGIAVLDTSIY----DSEGVGEVTMQDGEGNDIILACVEIKTRVADSSVGEAVLLSCPDVVLCEAGDDTFHKYIPQGHMAQIMQQVFVLGLRVGIYVAAAETGILYIVVYRCSEMVLRTCEDVLMDIASPIVKWAHEDTLTIPSFVTAECQRTLLTRHKF 170          
BLAST of Gcaud122.t1 vs. uniprot
Match: A0A3P3Y9H1_PLABS (YqaJ domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y9H1_PLABS)

HSP 1 Score: 80.9 bits (198), Expect = 3.120e-13
Identity = 63/209 (30.14%), Postives = 96/209 (45.93%), Query Frame = 0
Query:   16 TKAQRCVDWFILRQFRVTATLSGAALLRSKDVRDVL------GLSPQRGDTTQAQANVMHELTTAWFSTKRSTETMIRGTTNENVVRAALRQLPFITGLFEAGMLGVKGENHFACSPDGVALIDLTIVRDQLEANGAVHVTGMHFGDMYLGLAAVEIKTRVAKSTVGSAVT--HATESLIVMRIGAKELTEYVPAEHLCQILHQMFVLN 216
            T +QR  DWF+ R    T T+S    +R+   R +L         P+R     ++   + +   +W++ K++T+ M RGT NE  V  AL  L F+  + E GM+     +  A SPDGVAL+ L    D   A                    VEIKT VA S V  A++   A   ++ + +G  +  + VP E+  Q++ QM V N
Sbjct:  389 TASQRTQDWFVSRGMSCTGTMSHEIAVRNPVCRVLLLRNRHCNCPPRR-----SKEEWIRDFCKSWYTWKKATDAMKRGTKNEPSVLNALSHLEFVLCVCEVGMIRHHQHSWLAASPDGVALVRLDATLDPFPA-------------------VVEIKTAVAASVVTEALSIREAFGEVVYVVVGDDKWFDVVPTEYRAQVIQQMIVTN 573          
BLAST of Gcaud122.t1 vs. uniprot
Match: A0A2V3IPL2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPL2_9FLOR)

HSP 1 Score: 68.2 bits (165), Expect = 4.830e-9
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 0
Query:    2 NVLEEGLKLSCTVLTKAQRCVDWFILRQFRVTATLSGAALLRSKDVRDVLGLSPQRGDTTQAQANVMHELTTAWFSTKRSTETMIRGTTNENVVRAAL 99
            +V+E  +   C+VLT  QRC DWF+LRQFRVT T +G  L  +   R+++GLS         Q +++  + T WF   RSTE M+R     NV +++L
Sbjct:  400 DVIERHILDHCSVLTLDQRCADWFVLRQFRVTGTSAGKILHANDAFREMVGLSEPTCTEQTLQQSLLSFVQT-WFGGGRSTEPMMRVEIKTNVAQSSL 496          
The following BLAST results are available for this feature:
BLAST of Gcaud122.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A2V3IMH3_9FLOR4.270e-5339.42Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
A0A2V3ID74_9FLOR7.560e-5038.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ILZ8_9FLOR4.840e-4737.41YqaJ domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3INT2_9FLOR9.830e-4737.41YqaJ domain-containing protein n=2 Tax=Gracilariop... [more]
A0A2V3IMJ3_9FLOR1.850e-4637.06YqaJ domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3ISW5_9FLOR1.470e-3639.30Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QG12_CHOCR1.990e-2837.70Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IT75_9FLOR1.850e-2136.78Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A3P3Y9H1_PLABS3.120e-1330.14YqaJ domain-containing protein n=2 Tax=Plasmodioph... [more]
A0A2V3IPL2_9FLOR4.830e-939.80Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011604PD-(D/E)XK endonuclease-like domain superfamilyGENE3D3.90.320.10coord: 18..245
e-value: 6.8E-19
score: 70.3
IPR019080YqaJ viral recombinasePFAMPF09588YqaJcoord: 24..214
e-value: 2.3E-4
score: 21.4
IPR011335Restriction endonuclease type II-likeSUPERFAMILY52980Restriction endonuclease-likecoord: 18..240

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3180_length_3879_cov_4.525871contigNODE_3180_length_3879_cov_4.525871:8..928 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud122.t1Gcaud122.t1Gracilaria caudata M_176_S67 malemRNANODE_3180_length_3879_cov_4.525871 8..928 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud122.t1 ID=Gcaud122.t1|Name=Gcaud122.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=307bp
MNVLEEGLKLSCTVLTKAQRCVDWFILRQFRVTATLSGAALLRSKDVRDV
LGLSPQRGDTTQAQANVMHELTTAWFSTKRSTETMIRGTTNENVVRAALR
QLPFITGLFEAGMLGVKGENHFACSPDGVALIDLTIVRDQLEANGAVHVT
GMHFGDMYLGLAAVEIKTRVAKSTVGSAVTHATESLIVMRIGAKELTEYV
PAEHLCQILHQMFVLNVNLCLYVCVAETGFLYEVLIICDDEQRVLVGNTL
RCCTESGVKWAHEETIVFPDDIDTNMRSLLQSKNFILEGSQRKGSSRRPS
ASNQTI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011604PDDEXK-like_dom_sf
IPR019080YqaJ_viral_recombinase
IPR011335Restrct_endonuc-II-like