Gcaud1219.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1219.t1
Unique NameGcaud1219.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length508
Homology
BLAST of Gcaud1219.t1 vs. uniprot
Match: R7QQR0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQR0_CHOCR)

HSP 1 Score: 507 bits (1305), Expect = 2.020e-173
Identity = 258/485 (53.20%), Postives = 346/485 (71.34%), Query Frame = 0
Query:    1 MSEPSFLGFGAFETTAFLTSLIVAWYSLISNPSGRQSAFDSAEYQIFAGWRLALLAIITHIILMTVVIIQQAGASQVDSSARVWLLLLMIAPWAPIAGKVRDTLTSGARVRQMMKRRLVRNELSAILRDRFKFGQRSIAMPVVIYHASGR-IPTFIIQTLNEQEGLKDFIKDLKHEAMLAAQLEESHSLELGSLWAMNQSLQPTSVSRLSLFVWKVVSNIDVLSRLWTVRACPVRVDVMPEIKSIVERARYLDLADLLQQGGTISDELAQRGLKRFCEKCRAAIRCAVEIFLESSERGHTDMRAGEWLKNVGMDWRGSFERVIDVMWEACFMDSKALRV---QGDD-NDQSPSFNDRTKVTTTKMLALLFLMARSVVSTKDDTAVFDDICIVIADGPFRREWWSQYWSIFAHKLRHR-------NNDHIVVDASCRSTFKACLREMVDQDMLKIVDHLLENGIHSGMCGSVRCFLNTAQLVAKKY 473
            M +P FLGFGAFETTAFLT+++VA YSLISNP+GRQS+ +SAEYQ++AGWR AL+ +   + LM  VI+QQ+   +V ++A+ WL+ LM+APWAP+AGKVRDT+TS  RVR++MK RL RNEL+AI+RDRFKFGQR IA+P +I+HA+G   P   I  L            L+ +A   AQ +E  SL+LG+LWAMNQS QPTS+SR  LF+W+ VS  D+L+R WT     +  D MP IKS +ERA YLD+ADLLQQG T+SDEL +RGL+RFCE+CR ++R AVE FLESSERGHTD+RAG+WLKN+GM+WRG FERVIDVMWEA FMD+K  ++   Q DD  D+SP ++DR KVTTTK  ALLFL+ RS++    +   ++ +  ++ DGPF R WW +YW+     +R +       + +  VV    R+ FKA LR++VD D+  IV+  L++   S +CG   C+LN A+++ ++Y
Sbjct:    1 MEDPEFLGFGAFETTAFLTAVLVASYSLISNPTGRQSSSESAEYQVYAGWRFALIVLFLQLSLMLFVIVQQSFKPEVPANAKAWLIALMVAPWAPVAGKVRDTVTSFYRVRRLMKSRLTRNELAAIIRDRFKFGQRGIALPSIIFHATGGDTPAHPIAALRANSYFAVHEDALREQAEATAQTDEPCSLDLGALWAMNQSRQPTSISRTRLFLWRGVSACDLLARAWTEPRFCLDADPMPGIKSDMERALYLDVADLLQQGNTVSDELMERGLRRFCERCRLSVRGAVEAFLESSERGHTDLRAGKWLKNIGMNWRGQFERVIDVMWEAAFMDAKGFKLEISQKDDVQDESPDYDDRAKVTTTKTFALLFLIIRSLLKANGEHGAYETVAAIVRDGPFTRVWWERYWARLEEIVRAKRVKGGPADLEKPVVCVQMRADFKAALRDLVDDDVKGIVEEFLQHADDS-LCGDTECYLNPAKILVQEY 484          
BLAST of Gcaud1219.t1 vs. uniprot
Match: A0A1X6NYN9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYN9_PORUM)

HSP 1 Score: 298 bits (764), Expect = 7.380e-92
Identity = 190/496 (38.31%), Postives = 271/496 (54.64%), Query Frame = 0
Query:    4 PSFLGFGAFETTAFLTSLIVAWYSLISNPSGRQSAFDSAEYQIFAGWRLALLAIITHIILMTVV--IIQQAGASQVDSSARVWLLLLMIAPWAPIAGKVRDTLTSGARVRQMMKRRLVRNELSAILRDRFKFGQRSIAMPVVIYHASGRIPTFIIQTLNEQEGL---KDFIKDLK---------------HEAMLAAQLEESHSLELGSLWAMNQSLQPTSVSRLSLFVWKVVSNIDVLSRLWTVRACPVRVDVMPE------------IKSIVERARYLDLADLLQQGGTISDELAQRGLK-RFCEKCRAAIRCAVEIFLESSERGHTDMRAGEWLKNVGMDWRGSFERVIDVMWEACFMDSKALRVQ-GDDNDQSPSFNDRTKVTTTKMLALLFLMARSVVSTKDDTAVFDDICIVIADGPFRREWWSQYWSIFAHKLRHRNNDHIVVDASCRSTFKACLREMVDQDMLKIVDHLLENGIHSGMCGSVRCFLNT 465
            P F GFGAFETTAF T+++VA YSLI NP+GRQ   D +EY+++AGWRLA+L I   +ILM VV  ++ + G S   + A VW+LLLM   WAP+AG V+ T++S  RVR MM+ R+ RN+L+A+ R+ F  GQR IA+  ++Y ASG +P   ++ L +   L   +D I+                  H +      E    L++G LW+++Q  QP SV      V       D L   WT     + V   P+            +  +  +ARYLD  D LQ GGT+SDEL +R L+ RFC++C  AIR AVE FLES+ RGHTDMR+  W+ +V M W G +E V+DV WEA FMD+ A R+   +  + S  + D  KV T +M+ LLFL+ R+V+      A   D    +      R +W +YW  F   +    N  +       +TFKA  R M D++M  +VD L  + +   +C    C+L++
Sbjct:    6 PQFFGFGAFETTAFFTAVLVAAYSLIPNPTGRQGVSDRSEYRVYAGWRLAILVIGAQLILMVVVFGVLLRRGTS---AKAIVWVLLLMAGTWAPLAGLVKSTVSSWRRVRSMMRLRMTRNQLAAVAREYFLTGQRGIAVARIVYWASGELPVMPLRALGDVRELDAHRDAIRRAATPTVVAPPAAAVGWWHRSANKRAAEAGVLLDMGVLWSVHQGAQPGSVR--GAVVAAATYAADPLVWAWTHEHVALSVTPFPDCRRAAATGGAPRVPPVRVQARYLDTVDELQTGGTLSDELDRRALRDRFCDRCALAIRGAVEAFLESNARGHTDMRSS-WVADVNMAWAGHYEAVVDVFWEAAFMDAAANRLTVSERGNHSEGYGDYGKVVTLRMMTLLFLVLRAVMGEAPPLAPLADR---VDARLHTRGFWVEYWEAFRDAVSV--NGQVNASRIGTATFKAVTRTMQDREMGVLVDLLTTSPVTGSLCADPSCWLHS 490          
BLAST of Gcaud1219.t1 vs. uniprot
Match: A0A1X6P7I4_PORUM (Uncharacterized protein n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P7I4_PORUM)

HSP 1 Score: 187 bits (476), Expect = 1.530e-49
Identity = 140/469 (29.85%), Postives = 214/469 (45.63%), Query Frame = 0
Query:    5 SFLGFGAFETTAFLTSLIVAWYSLISNPSGRQSAFDSAEYQIFAGWRLALLAIITHIILMTVVIIQQAGASQVDSSARV--WLLLLMIAPWAPIAGKVRDTLTSGARVRQMMKRRLVRNELSAILRDRFKFGQRSIAMPVVIYHASGRI-------PTFIIQTL-----NEQEGLKDFIKDLKHEAMLAAQLEESHSLELGSLWAMNQSLQ---PTSVSRLSLFVWKVVSNIDVLSRLWTVRACPVRVDVMPEIKSI-----------------------VERARYLDLADLLQQGGTISDELAQRGLKR-FCEKCRAAIRCAVEIFLESSERGHTDMRAGEWLKNVGMDWRGSFERVIDVMWEACFMDSKALRVQGDDNDQSPSFNDRTKV-------------TTTKMLALLFLMARSVVSTKDDTAVFDDICIVIADGPFRREWWSQYWSIFAHKL---RHRNNDH 416
            SFLGFGAFETTAF  +L+V  YS I  P+GRQ A D +E  I++ WR  ++ +   ++L  +V+  Q  A   D  AR   W L LM+APWAP A KV   + +  +VR++M  R+ RNE+S +LR+  + G +S+    V    +G +       PT  ++ +     N     +++ K +  E M A ++        G+ W + +      P     +       +  +D  +R+W+        D  P  +                         V RA  LD  D      T+SD  A+  L    C++C  A+R AVE F ESS RGH ++ A +WL    +D+ G  E ++D MW ACF+D  AL+V  DD     + N+ +KV             TT K    LFL+ARS+          +++   +      R+WW  YW     +L   RH N+ +
Sbjct:    9 SFLGFGAFETTAFCVALLVGLYSFIKEPTGRQDARDVSEIHIYSMWRSGVVIVFLDMVLKAIVLTLQVKA---DKPARTVWWTLALMVAPWAPFADKVARGILAFGKVRRLMLARVARNEVSCVLREFLRMGHQSLDTASVAQKVTGVLDREAFLMPTQTLEAVVARNGNRMTATEEYQKRVD-EVMAAVRVG-------GAAWTVTRRSMRSGPKPDENIRHHRRMRLRRMDPWTRMWSQCKIATVADPFPPSRLAREDDVANAHEDVNAPALGRAVRKVTRAYILDQIDECNGSQTLSDLRAEESLPEDLCDRCNLAVRAAVETFFESSLRGHMNVSANQWLYEADLDYHGRLEGIVDAMWSACFVDHFALQV-ADDKGYEEARNNASKVVDKPVLDSPPMAVTTRKFFVFLFLVARSLFGVCHS---LEEVGEYVKSRLHSRQWWDDYWQDVVEELGKARHSNDTY 462          
BLAST of Gcaud1219.t1 vs. uniprot
Match: A0A1X6NST1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NST1_PORUM)

HSP 1 Score: 139 bits (349), Expect = 2.000e-31
Identity = 126/419 (30.07%), Postives = 198/419 (47.26%), Query Frame = 0
Query:    5 SFLGFGAFETTAFLTSLIVAWYSLISNPSGRQSAFDSAEYQIFAGWRLALLAIITHIILMTVVIIQQAGASQVDSSARVWLLLLMIAPWAPIAGKVRDTLTSGARVRQMMKRRLVRNELSAILRDRFKFGQRSIAMPVVIYHASGRIPTFIIQTLNEQEGLKDFIKDLKHEAMLAAQLEES-HSLELGSLWAMNQSLQ-PTSVSRLSLFV-----W-KVVSNIDVLSRLWTVRACPVRVDVMP-----------------------EIKSIVE-RARY---------LDLADLLQQGGTISD----ELAQRGLKRF------CEKCRAAIRCAVEIFLESSERGHTDMRAGEWLKNVGMDWRGSFE--RVIDVMWEACFMDSKALRVQGDDNDQSPSFNDRTKVTTTKMLALLFLMARS 370
            S LG+G FETTA + +  VA YSL+ +P+G Q+  + +E  ++  WR A   ++  + +   V  QQ  A        +WLL LM+ PWAP+AG  R T+ S  RVR+M++ R  RN L+A+LR+    G+ ++++            T +   L+E       +  L H   +     ES H+  L S+  +   ++  T++ RL  F      W ++VS  D L R+W+    PV ++V P                       E  ++ + R R+         LD+ DLLQ GGT+++    +LA+R  + F      C  C  A R AVE FLESS RGH   RA  W +++ M+    F    ++ V+ +A F+D     VQ D            + T+ ++L L F +ARS
Sbjct:   69 SVLGYGPFETTAVMVAFPVAAYSLVRDPTGEQAGANVSELTVYRQWRTAAACLLFWLGVTIAVNAQQLVAGWRGRDV-LWLLALMLVPWAPLAGSARRTIASTLRVRRMVRDRGARNRLTAVLREFLHTGENNLSV------------TTVATALSE-------VPRLYHGVSMVMSFYESWHADGLASVGGLPVPVEHSTALVRLGEFCGRRARWLRIVSRFDPLLRMWS--RPPVELEVSPFPRGDPADARGAPATAGGAARGEETPAVADLRPRFVPKANEPLVLDVIDLLQPGGTMAERRVRQLARRKTQGFFVDEPHCGLCVLAARAAVEAFLESSSRGHVGARADVWFRSIDMNDAVRFGSMNLLRVLRDAVFIDHDGRDVQSD------------RATSIRVLWLFFCLARS 453          
BLAST of Gcaud1219.t1 vs. uniprot
Match: A0A1X6P2W3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P2W3_PORUM)

HSP 1 Score: 131 bits (330), Expect = 6.420e-29
Identity = 132/485 (27.22%), Postives = 204/485 (42.06%), Query Frame = 0
Query:    5 SFLGFGAFETTAFLTSLIVAWYSLISNPSGRQSAFDSAEYQIFAGWRLALLAIITHIILMTVVIIQQAGASQVDSSARVWLLLLMIAPWAPIAGKVRDTLTSGARVRQMMKRRLVRNELSAILRDRFKFGQRSI-----AMPVVIYHASGRIPTFIIQTLNEQEGLKDFIKDLKHEAMLAAQLEESHSLELGSLWAMNQSLQPTSVSRLSLFVWKVVSNIDVLSRLWTVRACPVRV-----DVMPEIKSIVERARYLDLADLLQQGGTISDELAQRGLKRFCEKCRAAIRCAVEIFLESSERGHTDMRAGEWLKNVGMDWRGSFERVIDVMWEACFMDSKALRVQ---------------------GDDNDQSPSFN----------DRTKVTTTKMLALLFLMARSVVSTKDD-TAVFDDICIVIADGPFRREWWSQYWSIFAHKLRHRNNDHIVVDASCRSTFKACLREMVDQDMLKIVDHLL 447
            +FLGFG FETTA   +  VA Y+L+ NP+G Q A D +E +++  W  A   ++ + + +  V+  Q  A         WLL LM+APWAP+  +V  TL    RVR+MM+ R  RN L+A+LR+    G   +     A+ +        IP  +   LN  E  K+F +  K +   +     + +L      A + SL P S      + W    N D+           +RV      +     +  ++    D  D L   GT S++   +     CE+CR A+R AVE +LESS R H  + A EW + V   +      V+DVMW+A F D     +                      G     + S            DR + T  ++L LLF++ARS++   +D +AV + +   +   P    WW+ Y        RH +             F   LR    +++  I+  LL
Sbjct:   81 TFLGFGPFETTAVFVATFVAIYTLVPNPTGEQRAGDVSELRVYRQWLTAFGCLVGYALFVVAVLSHQCAAGWRGPHLG-WLLALMVAPWAPVVDRVWRTLRWTCRVRKMMRARQGRNHLTAMLREYLCLGHAGVSAVGAAVELGFVTQQPCIPG-VSMLLNGAEA-KEFWQQWKLKTPRSGLPLSARALHDTPPLA-DLSLPPLSRWDPLAWYWSRRGNGDLPDDSAHSGHKAMRVPSPFDQLADPTPTPWQQTLVFDALDRLLSCGTASEKRLAKLPPTVCERCRLAVRAAVEAYLESSSRHHAGVDALEWFRGVPYFYGKGTSGVLDVMWQAVFADHTGFHIDAVRACPVASGGISPPATTSLPGHSTGSAESRGCGDPRVFVGFDRAEATQ-RVLLLLFVVARSLLGAAEDLSAVRERVVSHLHATP----WWTVY-------ARHFDAQQAAKQEQSVFDFNLALRATTTEEVRNILQLLL 549          
BLAST of Gcaud1219.t1 vs. uniprot
Match: A0A1X6P8B6_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8B6_PORUM)

HSP 1 Score: 88.2 bits (217), Expect = 1.270e-14
Identity = 113/458 (24.67%), Postives = 176/458 (38.43%), Query Frame = 0
Query:    5 SFLGFGAFETTAFLTSLIVAWYSLISNPSGRQSAFDSAEYQIFAGWRLALLAIITHIILMTVVIIQQAGASQVDSSARVWLLLLMIAPWAPIAGKVRDTLTSGARVRQMMKRRLVRNELSAILRDRFKFGQRSIAMPVVI---YHASGRIPTFIIQTLNEQEGLKDFI-----------------KDLKHEAML----AAQLEESHSLELGSL-WAMNQSLQ---PTS-----VSR-----------LSLFVWKVVSNIDVLSRLWT------VRACPVRVDVMPEIKSIVERARYLDLADLLQQGGTISDELAQRGLKRFCEKCRAAIRCAVEIFLESSERGHTDMRAGEWLKNVGMDWRGSFERVIDVMWEACFMDSKALRVQGDDNDQSPSFNDRTKVT--TTKMLALLFLMARSVVSTKDDTAVFDDICIVIADGPFRREWWSQYWSIFAHKLR 410
            S LG  AF++TAF  +L VA Y L+ NP+G Q A D++E  ++  WR A +A+  +                                   +A  VR T+ +  RVR MM+ R  RN L+ +LR+    G   +   VV     H     P ++ + +   +G+ D                   +DL  +A+      A+     ++ L  L WA +++     P+S     V R           LS F +  V   D  +R         +R    R  + P  K+ V     LD  D +  GGT+S       L+  C++C  A R AVE+FLESS RGH  +    W ++  +    +  R    +  A  +D     V      +          T  T ++L  LFL+ARS++         D +   +        WW  YW     +LR
Sbjct:   44 SLLGGDAFDSTAFFVALFVAAYLLVPNPTGDQGATDASELIVYHQWRTAAVALTAY-----------------------------------VAFAVRRTVVATRRVRAMMRARGCRNRLTGVLREYLAIGHPDLVPAVVARERLHVVLSPPLWVPRAV-APDGVADAALDAVAMNLGYFGFGTAAEDLAGDAIADSYGGAETRARRAVRLDPLAWAWSRAADAVLPSSPLSGGVGRFFRHAVGETRLLSPFEYPPVDAADDAARAKAGLEVNLLRGIYTRRPLKPREKTAV-----LDAIDGVLPGGTLSTARVD-ALRGSCDRCVTAYRAAVELFLESSGRGHAGVDVTAWFRDDAIAPPWALSRAARTLRAAALVDGGGAPVDVGSRARGGGXXSGWTATKATEQVLLFLFLVARSLLG---GAGRLDGLRRHVTGRYHSAAWWDDYWVALGARLR 456          
The following BLAST results are available for this feature:
BLAST of Gcaud1219.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
R7QQR0_CHOCR2.020e-17353.20Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NYN9_PORUM7.380e-9238.31Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6P7I4_PORUM1.530e-4929.85Uncharacterized protein n=2 Tax=Porphyra umbilical... [more]
A0A1X6NST1_PORUM2.000e-3130.07Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6P2W3_PORUM6.420e-2927.22Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6P8B6_PORUM1.270e-1424.67Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 482..498
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 477..501
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..69
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 70..80
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 99..507
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..47
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 81..98
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
NoneNo IPR availableTMHMMTMhelixcoord: 81..98
NoneNo IPR availableTMHMMTMhelixcoord: 47..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_547_length_22469_cov_5.357315contigNODE_547_length_22469_cov_5.357315:19751..21274 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1219.t1Gcaud1219.t1Gracilaria caudata M_176_S67 malemRNANODE_547_length_22469_cov_5.357315 19751..21274 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1219.t1 ID=Gcaud1219.t1|Name=Gcaud1219.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=508bp
MSEPSFLGFGAFETTAFLTSLIVAWYSLISNPSGRQSAFDSAEYQIFAGW
RLALLAIITHIILMTVVIIQQAGASQVDSSARVWLLLLMIAPWAPIAGKV
RDTLTSGARVRQMMKRRLVRNELSAILRDRFKFGQRSIAMPVVIYHASGR
IPTFIIQTLNEQEGLKDFIKDLKHEAMLAAQLEESHSLELGSLWAMNQSL
QPTSVSRLSLFVWKVVSNIDVLSRLWTVRACPVRVDVMPEIKSIVERARY
LDLADLLQQGGTISDELAQRGLKRFCEKCRAAIRCAVEIFLESSERGHTD
MRAGEWLKNVGMDWRGSFERVIDVMWEACFMDSKALRVQGDDNDQSPSFN
DRTKVTTTKMLALLFLMARSVVSTKDDTAVFDDICIVIADGPFRREWWSQ
YWSIFAHKLRHRNNDHIVVDASCRSTFKACLREMVDQDMLKIVDHLLENG
IHSGMCGSVRCFLNTAQLVAKKYGPTRRRQHSKNALQQDTKKEKRSSGGM
VSIDLSS*
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