Gcaud1213.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1213.t1
Unique NameGcaud1213.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length118
Homology
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BLAST of Gcaud1213.t1 vs. uniprot
Match: A0A2V3ID60_9FLOR (Cartilage matrix protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID60_9FLOR)

HSP 1 Score: 65.5 bits (158), Expect = 1.610e-10
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 0 
Query:    2 GDGRSTVEEDAVSVARQFREQFGSKGRINTIAVGFSSTQALEAIDTASDGSVFEVDQFIDVLDVIAE 68
            GDGR T + DAVS+A  F++ F   GR++T+ VGF +T  L+ I  A  G +FE+D++ID LD++ +
Sbjct:  150 GDGRETSKTDAVSIAASFKD-FHPNGRLSTVGVGFPNTVLLKTIAEAGGGRLFEIDEYIDALDLVVD 215
The following BLAST results are available for this feature:
BLAST of Gcaud1213.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ID60_9FLOR1.610e-1044.78Cartilage matrix protein n=1 Tax=Gracilariopsis ch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1358_length_11186_cov_4.670302contigNODE_1358_length_11186_cov_4.670302:4808..5279 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1213.t1Gcaud1213.t1Gracilaria caudata M_176_S67 malemRNANODE_1358_length_11186_cov_4.670302 4808..5279 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1213.t1 ID=Gcaud1213.t1|Name=Gcaud1213.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=118bp
MGDGRSTVEEDAVSVARQFREQFGSKGRINTIAVGFSSTQALEAIDTASD
GSVFEVDQFIDVLDVIAERVFTSRIPRKGDRLASIRCLTETNSFTEMPEK
SVPPPDVLEPESVGVHM*
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