Gcaud1114.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1114.t1
Unique NameGcaud1114.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length370
Homology
BLAST of Gcaud1114.t1 vs. uniprot
Match: A0A2V3J287_9FLOR (DUF1995 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J287_9FLOR)

HSP 1 Score: 472 bits (1215), Expect = 4.040e-164
Identity = 235/365 (64.38%), Postives = 291/365 (79.73%), Query Frame = 0
Query:    4 MKPAFIPAMVAQGRPPNSKRVTNRQAHP--HPKRQRVRVSELTRKYRANARDVDEALMVDDSLPIDHNHARSQSPQQRTQLSS-----SYRSSLSFSRFPSSWGDTVSQVTTAVATAAADGHDRIRVDVKSPELVYSADSVVAVSAQKLSQHAKRIARLVECACSVLAQFFPTHGLAKRKVAYFVPRKGCLFFNSEEDAALGRRFIDPSLKHFVDVYVLDQVSSYNLKSTISVIIAPSNRQGNPSHIEAVERVHYANWNDNKLVLLLNPDLVALTRFPSFGNQPRQPCFLGDYLLSYYLDPVAFPTKTATGAVLRCFPRKWEMYLLKVHNNMGFRLVSEQQNPPSPEKIKCEFSWRIESELDADR 361
            MKPAFI AMVAQG PP+ +R    +A P   P R+RVR+SELT+KYRA ARD DEAL++ D+LP   + A +Q  ++   L +      Y S + FSRFPSSW + V+QVTTAV TAAADGHDRIRVDVK+PEL+Y+  +     + KLS+  +RIARLVECA S L +F       + K A+F P++GCLFFN+E DA +G+ +++PSL+  VDV+VLD +SSY+LKSTISV+IAPSNR GNPSHIEAVERVHY++WND KLV++LNPDL+AL++F SFG +PRQPCFLGDYLLSYYLDPVAFPTKTATGAVLRCFPRKWEMYLLKVHNNMGFRLV+EQ+ PPSPE+I+CEFSWRIE++++  R
Sbjct:    1 MKPAFIMAMVAQG-PPSKRRNATTRAPPARKPPRKRVRISELTQKYRAGARDNDEALLIGDNLPTPTSEAATQQSRESHPLPTHSQHAQYHSPVRFSRFPSSWQEAVTQVTTAVTTAAADGHDRIRVDVKTPELIYTPPNASDPHSAKLSRAHRRIARLVECANSTLREFLIISDSNRSKYAFFTPQRGCLFFNNEHDAEIGKAYLEPSLRALVDVHVLDDISSYSLKSTISVLIAPSNRHGNPSHIEAVERVHYSSWNDQKLVIMLNPDLMALSKFTSFGEEPRQPCFLGDYLLSYYLDPVAFPTKTATGAVLRCFPRKWEMYLLKVHNNMGFRLVAEQKTPPSPERIRCEFSWRIENDMETQR 364          
BLAST of Gcaud1114.t1 vs. uniprot
Match: R7QLD5_CHOCR (DUF1995 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLD5_CHOCR)

HSP 1 Score: 291 bits (744), Expect = 6.120e-93
Identity = 174/360 (48.33%), Postives = 217/360 (60.28%), Query Frame = 0
Query:    6 PAFIPAMV-AQGRPPNSKRVTNRQAHPHPKRQRVRVSEL-TRKYRANARDVDEALMVDD-SLPIDHNHARSQSPQQRTQLSSSYRSSLSFSRFPSSWGDTVSQVTTAVATAAADGHDRIRVDVKSPELVYSA--DSVVA-VSAQKLSQHAKRIARLVECACSVLAQFFPTHGLAKRKVAYFV-PRKGCLFFNSEEDAALGRRFIDPSLKHFVDVYVLDQVSSYNLKSTISVIIAPSNRQGNPSHIEAVERVHYANWNDNKLVLLLNPDLVALTRFPSFGNQPRQPCFLGDYLLSYYLDPVAFPTKTATGAVLRCFPRKWEMYLLKVHNNMGFRLVSEQQNPPSPEKIKCEFSWRIESELD 358
            PAF+P+M  A   PP+S R                     TRKYR      DE+LMV D +LP   + A    P  R            FSRFP SW +T +QV+ AV  AA +GHDRIRVDVK PEL+ +   D +   V     S HA R+A L + AC  +          KR     V P +  + FNS EDA +G RFI   ++ F DV+VL +      K+ I+V+IAP+NRQGN + IE VE VHYANW+  K+ ++ NP L+ALT   +FG++PR+P FL DYL SYYLD  AFP+KTATGAVLRCFPRKWEMYLLKV + MGFRLV+EQ  PPSPEKI+ EFSWRIESE++
Sbjct:    4 PAFLPSMCSAAPTPPSSTRAXXXXXXXXXXXXXXXXXXXXTRKYRDTRDPADESLMVGDPALPAYPSRA----PAVR------------FSRFPGSWEETAAQVSRAVVHAALEGHDRIRVDVKRPELLVNEFPDPLRKDVPLLDTSPHACRVALLTQVACDTIYALIQLDHSDKRNYRLCVKPMRAAVHFNSREDALVGDRFISDEVRQFTDVFVLGEKKKDRPKADIAVMIAPTNRQGNFAQIEKVELVHYANWSAPKINVMFNPQLIALTSLTAFGDEPREPGFLRDYLRSYYLDAAAFPSKTATGAVLRCFPRKWEMYLLKVQSKMGFRLVAEQPAPPSPEKIRGEFSWRIESEME 347          
BLAST of Gcaud1114.t1 vs. uniprot
Match: M2Y1T0_GALSU (DUF1995 domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y1T0_GALSU)

HSP 1 Score: 75.5 bits (184), Expect = 1.340e-11
Identity = 69/261 (26.44%), Postives = 127/261 (48.66%), Query Frame = 0
Query:   95 FPSSWGDTVSQVTTAVATAAADGHDRIRVDVKSPELVYSADSVVAVSAQKLSQHAKRIARLVECACSVLAQFFPTHGLAKRKVAYFVPRKGCLFFNSEEDAALGRRFIDPSLKHFVDVYVLDQVSS--YNLKSTISVIIAPSNRQGNPSH-IEAVERVHYANWNDNKLVLLLNPDLVALTRFPSFGNQPRQPCFLGDYLLSYYLDPVAFPTKTATGAVLRCFPRKWEMYLLKVHNNMGFRLVSEQQNP--PSPEKIKCEFS 350
            FP S  + V Q ++AV  AA D + R+RV+++ P L     S V      L ++ +     +   C+++ + F    L + K  +       LF ++     L   F+D  L + + V  +D V S   ++   I +I+ PSN   +    +E +ER+ Y+  + NK ++L N  + A T     G +P +P  L D+ ++Y++ P          ++LRC+PR WE+++L++  ++  +    +  P  PS E+I+ E S
Sbjct:   85 FPLSLEEAVQQASSAVVKAAEDNYKRLRVELQYPTL-----STVG----SLLEYGE-----LAYFCNMVCETF----LGQSKRVH-------LFGDTHHILNLVP-FLDTRLFNSISVSCIDDVQSGGRHIMEDICLILLPSNVGYDMGRRMERIERLIYSV-SHNKHIVLFNACMEACTSLTCSG-RPFEPMILNDFHIAYFIHPNILRQGCIQSSLLRCYPRNWELFVLRLPRDISSKYFLAKSFPSKPSMERIETEVS 317          
The following BLAST results are available for this feature:
BLAST of Gcaud1114.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J287_9FLOR4.040e-16464.38DUF1995 domain-containing protein n=1 Tax=Gracilar... [more]
R7QLD5_CHOCR6.120e-9348.33DUF1995 domain-containing protein n=1 Tax=Chondrus... [more]
M2Y1T0_GALSU1.340e-1126.44DUF1995 domain-containing protein n=1 Tax=Galdieri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018962Domain of unknown function DUF1995PFAMPF09353DUF1995coord: 96..345
e-value: 1.7E-22
score: 80.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availablePANTHERPTHR35509DOMAIN PROTEIN, PUTATIVE (DUF1995)-RELATEDcoord: 37..349

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_495_length_23741_cov_4.331670contigNODE_495_length_23741_cov_4.331670:17476..18585 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1114.t1Gcaud1114.t1Gracilaria caudata M_176_S67 malemRNANODE_495_length_23741_cov_4.331670 17476..18585 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1114.t1 ID=Gcaud1114.t1|Name=Gcaud1114.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=370bp
MANMKPAFIPAMVAQGRPPNSKRVTNRQAHPHPKRQRVRVSELTRKYRAN
ARDVDEALMVDDSLPIDHNHARSQSPQQRTQLSSSYRSSLSFSRFPSSWG
DTVSQVTTAVATAAADGHDRIRVDVKSPELVYSADSVVAVSAQKLSQHAK
RIARLVECACSVLAQFFPTHGLAKRKVAYFVPRKGCLFFNSEEDAALGRR
FIDPSLKHFVDVYVLDQVSSYNLKSTISVIIAPSNRQGNPSHIEAVERVH
YANWNDNKLVLLLNPDLVALTRFPSFGNQPRQPCFLGDYLLSYYLDPVAF
PTKTATGAVLRCFPRKWEMYLLKVHNNMGFRLVSEQQNPPSPEKIKCEFS
WRIESELDADRARRHFLAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018962DUF1995