Gcaud1114.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1114.t1
Unique Name	Gcaud1114.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	370

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_495_length_23741_cov_4.331670	contig	NODE_495_length_23741_cov_4.331670:17476..18585 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1114	Gcaud1114	Gracilaria caudata M_176_S67 male	gene	NODE_495_length_23741_cov_4.331670 17476..18585 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1114.t1.start1	Gcaud1114.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_495_length_23741_cov_4.331670 17476..17478 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1114.t1.CDS1	Gcaud1114.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_495_length_23741_cov_4.331670 17476..18585 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1114.t1.exon1	Gcaud1114.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_495_length_23741_cov_4.331670 17476..18585 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1114.t1.stop1	Gcaud1114.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_495_length_23741_cov_4.331670 18583..18585 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1114.t1	Gcaud1114.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_495_length_23741_cov_4.331670 17476..18585 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_495_length_23741_cov_4.331670:17476..18585+
coding sequence from alignment at NODE_495_length_23741_cov_4.331670:17476..18585+

mRNA sequence

>Gcaud1114.t1 ID=Gcaud1114.t1|Name=Gcaud1114.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=370bp
MANMKPAFIPAMVAQGRPPNSKRVTNRQAHPHPKRQRVRVSELTRKYRAN
ARDVDEALMVDDSLPIDHNHARSQSPQQRTQLSSSYRSSLSFSRFPSSWG
DTVSQVTTAVATAAADGHDRIRVDVKSPELVYSADSVVAVSAQKLSQHAK
RIARLVECACSVLAQFFPTHGLAKRKVAYFVPRKGCLFFNSEEDAALGRR
FIDPSLKHFVDVYVLDQVSSYNLKSTISVIIAPSNRQGNPSHIEAVERVH
YANWNDNKLVLLLNPDLVALTRFPSFGNQPRQPCFLGDYLLSYYLDPVAF
PTKTATGAVLRCFPRKWEMYLLKVHNNMGFRLVSEQQNPPSPEKIKCEFS
WRIESELDADRARRHFLAE*

spliced messenger RNA

>Gcaud1114.t1 ID=Gcaud1114.t1|Name=Gcaud1114.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:17476..18585+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAACATGAAGCCCGCGTTTATCCCCGCAATGGTGGCGCAAGGACG
TCCGCCCAATTCCAAGCGCGTCACCAATCGTCAAGCCCATCCTCACCCCA
AGCGCCAGCGCGTTCGAGTTTCCGAGCTCACGCGCAAGTACCGTGCGAAC
GCACGCGATGTCGACGAGGCCTTGATGGTAGACGACTCGCTTCCAATCGA
TCATAACCACGCTCGCTCTCAGAGCCCGCAACAACGCACGCAACTGTCAT
CCTCCTATCGTTCCTCGCTCAGCTTTTCGCGCTTTCCATCCTCTTGGGGC
GACACAGTTTCACAAGTCACCACTGCTGTCGCTACTGCCGCCGCTGATGG
ACACGACCGCATTCGCGTCGACGTCAAGTCGCCGGAACTTGTGTACAGTG
CTGATAGCGTTGTTGCTGTGTCTGCACAGAAACTTTCGCAGCACGCCAAA
CGCATTGCCAGGCTTGTTGAATGTGCTTGTTCCGTGTTGGCGCAATTTTT
CCCTACCCACGGGCTCGCAAAGAGGAAGGTTGCATACTTCGTGCCTAGAA
AGGGTTGCTTGTTCTTCAACAGCGAGGAAGATGCTGCTCTTGGTCGCCGC
TTTATTGACCCAAGCCTTAAACACTTCGTCGACGTCTATGTTCTCGACCA
GGTGTCATCGTACAATCTCAAATCTACCATTTCCGTCATTATAGCCCCCA
GTAACCGACAAGGAAATCCTTCTCACATCGAGGCCGTTGAACGTGTGCAT
TACGCCAATTGGAATGACAACAAGCTCGTCCTTTTGTTGAATCCAGACCT
TGTTGCGCTAACTAGGTTTCCATCTTTCGGTAACCAACCTCGTCAACCGT
GCTTCTTGGGAGATTACTTGCTGTCTTATTACCTTGACCCTGTTGCCTTC
CCGACGAAGACAGCCACGGGCGCTGTTCTGCGCTGCTTCCCCAGGAAGTG
GGAGATGTATCTGCTCAAGGTTCACAACAACATGGGCTTTCGACTGGTTT
CCGAACAGCAGAACCCGCCATCGCCGGAGAAGATAAAATGCGAGTTCTCG
TGGCGTATTGAAAGCGAGTTGGACGCTGACAGAGCACGTCGACATTTTCT
AGCTGAATAG

protein sequence of Gcaud1114.t1

>Gcaud1114.t1 ID=Gcaud1114.t1|Name=Gcaud1114.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=370bp
MANMKPAFIPAMVAQGRPPNSKRVTNRQAHPHPKRQRVRVSELTRKYRAN
ARDVDEALMVDDSLPIDHNHARSQSPQQRTQLSSSYRSSLSFSRFPSSWG
DTVSQVTTAVATAAADGHDRIRVDVKSPELVYSADSVVAVSAQKLSQHAK
RIARLVECACSVLAQFFPTHGLAKRKVAYFVPRKGCLFFNSEEDAALGRR
FIDPSLKHFVDVYVLDQVSSYNLKSTISVIIAPSNRQGNPSHIEAVERVH
YANWNDNKLVLLLNPDLVALTRFPSFGNQPRQPCFLGDYLLSYYLDPVAF
PTKTATGAVLRCFPRKWEMYLLKVHNNMGFRLVSEQQNPPSPEKIKCEFS
WRIESELDADRARRHFLAE*

mRNA from alignment at NODE_495_length_23741_cov_4.331670:17476..18585+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1114.t1 ID=Gcaud1114.t1|Name=Gcaud1114.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:17476..18585+ (Gracilaria caudata M_176_S67 male)
ATGGCCAACATGAAGCCCGCGTTTATCCCCGCAATGGTGGCGCAAGGACG
TCCGCCCAATTCCAAGCGCGTCACCAATCGTCAAGCCCATCCTCACCCCA
AGCGCCAGCGCGTTCGAGTTTCCGAGCTCACGCGCAAGTACCGTGCGAAC
GCACGCGATGTCGACGAGGCCTTGATGGTAGACGACTCGCTTCCAATCGA
TCATAACCACGCTCGCTCTCAGAGCCCGCAACAACGCACGCAACTGTCAT
CCTCCTATCGTTCCTCGCTCAGCTTTTCGCGCTTTCCATCCTCTTGGGGC
GACACAGTTTCACAAGTCACCACTGCTGTCGCTACTGCCGCCGCTGATGG
ACACGACCGCATTCGCGTCGACGTCAAGTCGCCGGAACTTGTGTACAGTG
CTGATAGCGTTGTTGCTGTGTCTGCACAGAAACTTTCGCAGCACGCCAAA
CGCATTGCCAGGCTTGTTGAATGTGCTTGTTCCGTGTTGGCGCAATTTTT
CCCTACCCACGGGCTCGCAAAGAGGAAGGTTGCATACTTCGTGCCTAGAA
AGGGTTGCTTGTTCTTCAACAGCGAGGAAGATGCTGCTCTTGGTCGCCGC
TTTATTGACCCAAGCCTTAAACACTTCGTCGACGTCTATGTTCTCGACCA
GGTGTCATCGTACAATCTCAAATCTACCATTTCCGTCATTATAGCCCCCA
GTAACCGACAAGGAAATCCTTCTCACATCGAGGCCGTTGAACGTGTGCAT
TACGCCAATTGGAATGACAACAAGCTCGTCCTTTTGTTGAATCCAGACCT
TGTTGCGCTAACTAGGTTTCCATCTTTCGGTAACCAACCTCGTCAACCGT
GCTTCTTGGGAGATTACTTGCTGTCTTATTACCTTGACCCTGTTGCCTTC
CCGACGAAGACAGCCACGGGCGCTGTTCTGCGCTGCTTCCCCAGGAAGTG
GGAGATGTATCTGCTCAAGGTTCACAACAACATGGGCTTTCGACTGGTTT
CCGAACAGCAGAACCCGCCATCGCCGGAGAAGATAAAATGCGAGTTCTCG
TGGCGTATTGAAAGCGAGTTGGACGCTGACAGAGCACGTCGACATTTTCT
AGCTGAATAG

Coding sequence (CDS) from alignment at NODE_495_length_23741_cov_4.331670:17476..18585+

>Gcaud1114.t1 ID=Gcaud1114.t1|Name=Gcaud1114.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1110bp|location=Sequence derived from alignment at NODE_495_length_23741_cov_4.331670:17476..18585+ (Gracilaria caudata M_176_S67 male)
ATGGCCAACATGAAGCCCGCGTTTATCCCCGCAATGGTGGCGCAAGGACG
TCCGCCCAATTCCAAGCGCGTCACCAATCGTCAAGCCCATCCTCACCCCA
AGCGCCAGCGCGTTCGAGTTTCCGAGCTCACGCGCAAGTACCGTGCGAAC
GCACGCGATGTCGACGAGGCCTTGATGGTAGACGACTCGCTTCCAATCGA
TCATAACCACGCTCGCTCTCAGAGCCCGCAACAACGCACGCAACTGTCAT
CCTCCTATCGTTCCTCGCTCAGCTTTTCGCGCTTTCCATCCTCTTGGGGC
GACACAGTTTCACAAGTCACCACTGCTGTCGCTACTGCCGCCGCTGATGG
ACACGACCGCATTCGCGTCGACGTCAAGTCGCCGGAACTTGTGTACAGTG
CTGATAGCGTTGTTGCTGTGTCTGCACAGAAACTTTCGCAGCACGCCAAA
CGCATTGCCAGGCTTGTTGAATGTGCTTGTTCCGTGTTGGCGCAATTTTT
CCCTACCCACGGGCTCGCAAAGAGGAAGGTTGCATACTTCGTGCCTAGAA
AGGGTTGCTTGTTCTTCAACAGCGAGGAAGATGCTGCTCTTGGTCGCCGC
TTTATTGACCCAAGCCTTAAACACTTCGTCGACGTCTATGTTCTCGACCA
GGTGTCATCGTACAATCTCAAATCTACCATTTCCGTCATTATAGCCCCCA
GTAACCGACAAGGAAATCCTTCTCACATCGAGGCCGTTGAACGTGTGCAT
TACGCCAATTGGAATGACAACAAGCTCGTCCTTTTGTTGAATCCAGACCT
TGTTGCGCTAACTAGGTTTCCATCTTTCGGTAACCAACCTCGTCAACCGT
GCTTCTTGGGAGATTACTTGCTGTCTTATTACCTTGACCCTGTTGCCTTC
CCGACGAAGACAGCCACGGGCGCTGTTCTGCGCTGCTTCCCCAGGAAGTG
GGAGATGTATCTGCTCAAGGTTCACAACAACATGGGCTTTCGACTGGTTT
CCGAACAGCAGAACCCGCCATCGCCGGAGAAGATAAAATGCGAGTTCTCG
TGGCGTATTGAAAGCGAGTTGGACGCTGACAGAGCACGTCGACATTTTCT
AGCTGAATAG