Gcaud1060.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1060.t1
Unique NameGcaud1060.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length210
Homology
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BLAST of Gcaud1060.t1 vs. uniprot
Match: R7QR46_CHOCR (APH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QR46_CHOCR)

HSP 1 Score: 63.5 bits (153), Expect = 1.520e-8
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 0 
Query:  134 ICQLRASAFGTILQANTTKGRFFLKCTPYWANDASYTKVLSEIVPEFVAKPVIVDLNRQIMITADYGE 201
            + Q+RAS+ G +L+  T +  ++LKC+   +NDA  T ++S +VP+ VAKP+  D+ R+ MI  D+G 
Sbjct:    4 LVQIRASSRGAVLRIKTDESDYYLKCSTSTSNDAGVTSIMSNVVPDLVAKPLFADVERRQMILVDHGN 71
The following BLAST results are available for this feature:
BLAST of Gcaud1060.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QR46_CHOCR1.520e-839.71APH domain-containing protein n=1 Tax=Chondrus cri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5173_length_1737_cov_9.945322contigNODE_5173_length_1737_cov_9.945322:2..1399 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1060.t1Gcaud1060.t1Gracilaria caudata M_176_S67 malemRNANODE_5173_length_1737_cov_9.945322 2..1399 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1060.t1 ID=Gcaud1060.t1|Name=Gcaud1060.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=210bp
MLKGLVTVGTSSSSLEEQAPAASDTANAGAIAPSSIVRDNHAIDLSKAVI
VMEGKTDELENLGHYRWIDLEKATVFHHFKDAMVAIQREQGYALEGNEPP
KRAPWQRPGWFVETSTWMQDALLDVCNATLTDPICQLRASAFGTILQANT
TKGRFFLKCTPYWANDASYTKVLSEIVPEFVAKPVIVDLNRQIMITADYG
EILLTFELPV
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