Gcaud1060.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1060.t1
Unique Name	Gcaud1060.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	210

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5173_length_1737_cov_9.945322	contig	NODE_5173_length_1737_cov_9.945322:2..1399 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	373994.Riv7116_5989
Preferred name	amgP
PFAMs	APH
Max annot lvl	2\|Bacteria
Evalue	2.17e-10
EggNOG OGs	COG3173@1\|root,COG3173@2\|Bacteria
Description	very-long-chain-acyl-CoA dehydrogenase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1060	Gcaud1060	Gracilaria caudata M_176_S67 male	gene	NODE_5173_length_1737_cov_9.945322 2..1399 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1060.t1	Gcaud1060.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5173_length_1737_cov_9.945322 2..1399 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1060.t1.CDS1	Gcaud1060.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5173_length_1737_cov_9.945322 2..526 -
Gcaud1060.t1.CDS2	Gcaud1060.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_5173_length_1737_cov_9.945322 1182..1273 -
Gcaud1060.t1.CDS3	Gcaud1060.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_5173_length_1737_cov_9.945322 1387..1399 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1060.t1.exon1	Gcaud1060.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5173_length_1737_cov_9.945322 2..526 -
Gcaud1060.t1.exon2	Gcaud1060.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_5173_length_1737_cov_9.945322 1182..1273 -
Gcaud1060.t1.exon3	Gcaud1060.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_5173_length_1737_cov_9.945322 1387..1399 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1060.t1.intron1	Gcaud1060.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_5173_length_1737_cov_9.945322 527..1181 -
Gcaud1060.t1.intron2	Gcaud1060.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_5173_length_1737_cov_9.945322 1274..1386 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1060.t1.start1	Gcaud1060.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5173_length_1737_cov_9.945322 1397..1399 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5173_length_1737_cov_9.945322:2..1399-
coding sequence from alignment at NODE_5173_length_1737_cov_9.945322:2..1399-

mRNA sequence

>Gcaud1060.t1 ID=Gcaud1060.t1|Name=Gcaud1060.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=210bp
MLKGLVTVGTSSSSLEEQAPAASDTANAGAIAPSSIVRDNHAIDLSKAVI
VMEGKTDELENLGHYRWIDLEKATVFHHFKDAMVAIQREQGYALEGNEPP
KRAPWQRPGWFVETSTWMQDALLDVCNATLTDPICQLRASAFGTILQANT
TKGRFFLKCTPYWANDASYTKVLSEIVPEFVAKPVIVDLNRQIMITADYG
EILLTFELPV

spliced messenger RNA

>Gcaud1060.t1 ID=Gcaud1060.t1|Name=Gcaud1060.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=630bp|location=Sequence derived from alignment at NODE_5173_length_1737_cov_9.945322:2..1399- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAAGGGTTTGGTTACCGTCGGTACCTCTTCGTCAAGCTTAGAAGA
GCAAGCCCCAGCTGCTTCAGATACAGCAAATGCAGGCGCCATCGCCCCAA
GTTCCATTGTGCGGGACAATCATGCCATAGATCTTTCGAAAGCGGTAATC
GTGATGGAAGGAAAGACCGATGAACTTGAAAACCTCGGTCACTATAGGTG
GATAGATTTAGAGAAAGCGACAGTTTTTCATCACTTCAAAGACGCAATGG
TTGCAATCCAACGCGAACAGGGATATGCACTAGAGGGGAACGAGCCACCG
AAACGAGCGCCTTGGCAAAGGCCTGGATGGTTTGTTGAGACATCCACATG
GATGCAAGATGCCCTACTCGATGTTTGTAACGCCACACTCACAGATCCAA
TTTGTCAACTACGAGCATCCGCCTTTGGTACGATACTGCAAGCAAACACC
ACAAAGGGCCGTTTCTTCTTGAAGTGCACTCCGTACTGGGCCAACGATGC
GTCGTATACCAAGGTTCTCTCCGAAATTGTGCCGGAGTTTGTGGCGAAAC
CTGTGATAGTGGACTTGAATCGTCAAATAATGATTACTGCAGACTACGGG
GAAATTCTTCTAACCTTTGAGCTCCCTGTC

protein sequence of Gcaud1060.t1

>Gcaud1060.t1 ID=Gcaud1060.t1|Name=Gcaud1060.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=210bp
MLKGLVTVGTSSSSLEEQAPAASDTANAGAIAPSSIVRDNHAIDLSKAVI
VMEGKTDELENLGHYRWIDLEKATVFHHFKDAMVAIQREQGYALEGNEPP
KRAPWQRPGWFVETSTWMQDALLDVCNATLTDPICQLRASAFGTILQANT
TKGRFFLKCTPYWANDASYTKVLSEIVPEFVAKPVIVDLNRQIMITADYG
EILLTFELPV

mRNA from alignment at NODE_5173_length_1737_cov_9.945322:2..1399-

Legend: polypeptideCDSexonstart_codonintron

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1060.t1 ID=Gcaud1060.t1|Name=Gcaud1060.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at NODE_5173_length_1737_cov_9.945322:2..1399- (Gracilaria caudata M_176_S67 male)
ATGCTCAAGGGTTGTAAGTAATGGTCGCGCAGCTCGTAACATACAGTACA
GAGTACAGAGTACAAGGGTACGATATCTACCCTTCGTACGGAAGTAATTT
TTTCGCTGACGTTGTCATCCACCAAGTGGTTACCGTCGGTACCTCTTCGT
CAAGCTTAGAAGAGCAAGCCCCAGCTGCTTCAGATACAGCAAATGCAGGC
GCCATCGCCCCAAGTTCCGTCATCGCTACCTGATCTACCCTTTTCTGTGC
TTTGGAGCCGACTTTGCGTCACCTTGACGGTTTTGTCTTTCTGGTCGGAT
CGCTAGACTGGAATAAATCCCAATCGCGAATCTGATACACGGCGAATACA
GGTTTGAGCTCTTCTTGTCAATGTAAATTCAACAAGAGTGTGACGAGAAA
GTTTTGACCAGGTTTTTCGTTTCTACTCATTCATACATACATTCACACAT
TCCTACATTCATACATTCTGTCTCTTGCTGGGAACCCGTGAGCACGCTTA
CCGTCTAAGACCCCCAATGTCGCCCACCAAAGAAGAGTGTTGTGTGAATA
CCCCCACAAAGTGTGCACCGACCAAAGACCGATCTTGTGCGCGTTCTCCA
CACTCACCACTACGAAGTGATTGGACTTGGGAGTTTTGTACATCTGGAGA
GCCTCTGAAATATGAAGTTCAAGCCCTCATCATTGATTACTCGCGGAAGG
AGGTTTTATTACAACAAGAAGGTCACCGTTGGGTTCTTCCCGGTATTTTA
ATTGATGAGGACGAGTTTCAATCCACCGAAGAGCCCGTGTTCTTGATTAG
AGATTTTGAGAACGCCCTTCCTTTCAACATCGAACTGTTTTTTGTCCGTC
GATGTTGGTTTGTACAAAGAGAGATTGTGCGGGACAATCATGCCATAGAT
CTTTCGAAAGCGGTAATCGTGATGGAAGGAAAGACCGATGAACTTGAAAA
CCTCGGTCACTATAGGTGGATAGATTTAGAGAAAGCGACAGTTTTTCATC
ACTTCAAAGACGCAATGGTTGCAATCCAACGCGAACAGGGATATGCACTA
GAGGGGAACGAGCCACCGAAACGAGCGCCTTGGCAAAGGCCTGGATGGTT
TGTTGAGACATCCACATGGATGCAAGATGCCCTACTCGATGTTTGTAACG
CCACACTCACAGATCCAATTTGTCAACTACGAGCATCCGCCTTTGGTACG
ATACTGCAAGCAAACACCACAAAGGGCCGTTTCTTCTTGAAGTGCACTCC
GTACTGGGCCAACGATGCGTCGTATACCAAGGTTCTCTCCGAAATTGTGC
CGGAGTTTGTGGCGAAACCTGTGATAGTGGACTTGAATCGTCAAATAATG
ATTACTGCAGACTACGGGGAAATTCTTCTAACCTTTGAGCTCCCTGTC

Coding sequence (CDS) from alignment at NODE_5173_length_1737_cov_9.945322:2..1399-

>Gcaud1060.t1 ID=Gcaud1060.t1|Name=Gcaud1060.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=630bp|location=Sequence derived from alignment at NODE_5173_length_1737_cov_9.945322:2..1399- (Gracilaria caudata M_176_S67 male)
ATGCTCAAGGGTTTGGTTACCGTCGGTACCTCTTCGTCAAGCTTAGAAGA
GCAAGCCCCAGCTGCTTCAGATACAGCAAATGCAGGCGCCATCGCCCCAA
GTTCCATTGTGCGGGACAATCATGCCATAGATCTTTCGAAAGCGGTAATC
GTGATGGAAGGAAAGACCGATGAACTTGAAAACCTCGGTCACTATAGGTG
GATAGATTTAGAGAAAGCGACAGTTTTTCATCACTTCAAAGACGCAATGG
TTGCAATCCAACGCGAACAGGGATATGCACTAGAGGGGAACGAGCCACCG
AAACGAGCGCCTTGGCAAAGGCCTGGATGGTTTGTTGAGACATCCACATG
GATGCAAGATGCCCTACTCGATGTTTGTAACGCCACACTCACAGATCCAA
TTTGTCAACTACGAGCATCCGCCTTTGGTACGATACTGCAAGCAAACACC
ACAAAGGGCCGTTTCTTCTTGAAGTGCACTCCGTACTGGGCCAACGATGC
GTCGTATACCAAGGTTCTCTCCGAAATTGTGCCGGAGTTTGTGGCGAAAC
CTGTGATAGTGGACTTGAATCGTCAAATAATGATTACTGCAGACTACGGG
GAAATTCTTCTAACCTTTGAGCTCCCTGTC