Gcaud1050.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1050.t1
Unique NameGcaud1050.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length414
Homology
BLAST of Gcaud1050.t1 vs. uniprot
Match: PSBC_PORPU (Photosystem II CP43 reaction center protein n=241 Tax=Eukaryota TaxID=2759 RepID=PSBC_PORPU)

HSP 1 Score: 823 bits (2125), Expect = 6.030e-300
Identity = 389/414 (93.96%), Postives = 400/414 (96.62%), Query Frame = 0
Query:    1 MKVFVHGWQLKINHTKTLYSQRRFYHVETPFNQNI-VSGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFILIPHLATLGWGVGPGGEIINIYPYFVVGILHLISSAVLGFGGLYHALIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKALFFGGVYDTWAPGGGDVRLISNPTLNPAIIFAYVLKSPFGGDGWIVSVNNMEDLIGGHVWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTASNYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP 413
            MKVFV GW LKIN  KTLYSQRRFYHVETPFN N+ V GRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHF+PEKPLYEQG ILIPHLATLGWGVGPGGEI N YPYFVVG++HLISSAVLGFGGLYH+LIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIG+FLLVIK+LF GGVYDTWAPGGGDVR +SNPTLNP +IF YVLKSPFGGDGWIVSVNNMEDLIGGHVWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTASN+VWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVAS+QGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP
Sbjct:    1 MKVFVLGWLLKINLMKTLYSQRRFYHVETPFNTNVGVGGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFVPEKPLYEQGLILIPHLATLGWGVGPGGEIFNTYPYFVVGVVHLISSAVLGFGGLYHSLIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGAFLLVIKSLFVGGVYDTWAPGGGDVRFVSNPTLNPLVIFGYVLKSPFGGDGWIVSVNNMEDLIGGHVWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTASNFVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASSQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP 414          
BLAST of Gcaud1050.t1 vs. uniprot
Match: B7T1T1_VAULI (Photosystem II CP43 reaction center protein n=2 Tax=PX clade TaxID=569578 RepID=B7T1T1_VAULI)

HSP 1 Score: 800 bits (2067), Expect = 3.840e-291
Identity = 370/413 (89.59%), Postives = 395/413 (95.64%), Query Frame = 0
Query:    1 MKVFVHGWQLKINHTKTLYSQRRFYHVETPFNQNIVSGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFILIPHLATLGWGVGPGGEIINIYPYFVVGILHLISSAVLGFGGLYHALIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKALFFGGVYDTWAPGGGDVRLISNPTLNPAIIFAYVLKSPFGGDGWIVSVNNMEDLIGGHVWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTASNYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP 413
            MKV V GWQ KINHTKTLYS RRFYHVETPFN +++ GRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTG MTLFEV+HFIPEKPLYEQGFILIPHLATLGWGVG  GEIIN YPYFVVG+LHLISSAVLGFGG+YH+LIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKA+F GG+YDTWAPGGGDVRLI++PTLNP +IF Y+LKSPFGGDGWIVSV+NMEDL+GGH+W+GIIC+ GGIWHI TKPF+WARRAFVWSGEAYLSYSL ALS+MGLTA  +VWYNNTAYPSEF+GPTGPEASQAQAFTFLVRDQRLGAN+ASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLD+NKI+NDIQPWQERRAAEYMTHAP
Sbjct:    1 MKVSVLGWQHKINHTKTLYSLRRFYHVETPFNNSVI-GRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGTMTLFEVSHFIPEKPLYEQGFILIPHLATLGWGVGSAGEIINTYPYFVVGVLHLISSAVLGFGGIYHSLIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKAMFVGGIYDTWAPGGGDVRLINSPTLNPLVIFGYILKSPFGGDGWIVSVDNMEDLVGGHIWVGIICLVGGIWHIFTKPFSWARRAFVWSGEAYLSYSLAALSVMGLTAGTFVWYNNTAYPSEFFGPTGPEASQAQAFTFLVRDQRLGANIASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDINKIRNDIQPWQERRAAEYMTHAP 412          
BLAST of Gcaud1050.t1 vs. uniprot
Match: A0A7S6UA13_9STRA (Photosystem II CP43 reaction center protein n=49 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6UA13_9STRA)

HSP 1 Score: 791 bits (2044), Expect = 1.180e-287
Identity = 366/413 (88.62%), Postives = 395/413 (95.64%), Query Frame = 0
Query:    1 MKVFVHGWQLKINHTKTLYSQRRFYHVETPFNQNIVSGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFILIPHLATLGWGVGPGGEIINIYPYFVVGILHLISSAVLGFGGLYHALIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKALFFGGVYDTWAPGGGDVRLISNPTLNPAIIFAYVLKSPFGGDGWIVSVNNMEDLIGGHVWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTASNYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP 413
            MKV V GWQ KI+H KTLYS RRFYHVETPFN   V+GRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEV+HFIPEKPLYEQGFILIPHLATLGWGV PGGEI+N YPYFVVG+LHLISSAVLGFGG+YH+LIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLG+GSFLLVIKA+F GG+YDTWAPGGGDVR++++PTLNP +IF YVLKSPFGGDGWIVS++N+EDL+GGH+W+GI+C  GGIWHI TKPF+WARRAFVWSGEAYLSYSL ALS+MGLTAS +VWYNNTAYPSEF+GPTGPEASQ+QAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLD+NKI+NDIQPWQERRAAEYMTHAP
Sbjct:    1 MKVSVLGWQHKISHMKTLYSLRRFYHVETPFNN--VAGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVSHFIPEKPLYEQGFILIPHLATLGWGVAPGGEIVNTYPYFVVGVLHLISSAVLGFGGIYHSLIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGLGSFLLVIKAMFVGGLYDTWAPGGGDVRVVTSPTLNPLVIFGYVLKSPFGGDGWIVSIDNLEDLVGGHIWVGILCCFGGIWHITTKPFSWARRAFVWSGEAYLSYSLAALSVMGLTASIFVWYNNTAYPSEFFGPTGPEASQSQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDINKIRNDIQPWQERRAAEYMTHAP 411          
BLAST of Gcaud1050.t1 vs. uniprot
Match: B2XT20_HETAK (Photosystem II CP43 reaction center protein n=10 Tax=Ochrophyta TaxID=2696291 RepID=B2XT20_HETAK)

HSP 1 Score: 791 bits (2043), Expect = 1.680e-287
Identity = 363/413 (87.89%), Postives = 393/413 (95.16%), Query Frame = 0
Query:    1 MKVFVHGWQLKINHTKTLYSQRRFYHVETPFNQNIVSGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFILIPHLATLGWGVGPGGEIINIYPYFVVGILHLISSAVLGFGGLYHALIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKALFFGGVYDTWAPGGGDVRLISNPTLNPAIIFAYVLKSPFGGDGWIVSVNNMEDLIGGHVWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTASNYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP 413
            MKV V GW LK NH KTLYSQRRFYHVETPFN   V+GRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEV+HFIPEKPLYEQG ILIPHLATLGWGVGP GEIIN YP+FVVG+LHLISSAVLGFGG+YH+L+GPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKA+F GG+YDTWAPGGGDVR I++PTLNP +IF YVLK+PFGGDGWI+S+NNMEDL+GGH+W+G++C+ GGIWHI+TKPFAWARRAFVWSGEAYLSYSL ALS+MG +A+ + WYNNTAYPSEFYGPTGPEASQ+QAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPW+EPLRGPNGLD+NKI+NDIQPWQERRAAEYMTHAP
Sbjct:    1 MKVSVRGWLLKTNHMKTLYSQRRFYHVETPFNN--VAGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVSHFIPEKPLYEQGCILIPHLATLGWGVGPSGEIINTYPFFVVGVLHLISSAVLGFGGIYHSLLGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKAMFVGGIYDTWAPGGGDVRFINSPTLNPLVIFGYVLKAPFGGDGWIMSINNMEDLVGGHIWVGVLCVVGGIWHIITKPFAWARRAFVWSGEAYLSYSLAALSLMGFSAAVFAWYNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWLEPLRGPNGLDINKIRNDIQPWQERRAAEYMTHAP 411          
BLAST of Gcaud1050.t1 vs. uniprot
Match: A0A220T0Q8_9RHOD (Photosystem II CP43 reaction center protein n=3 Tax=Compsopogonophyceae TaxID=930023 RepID=A0A220T0Q8_9RHOD)

HSP 1 Score: 784 bits (2024), Expect = 9.750e-285
Identity = 358/403 (88.83%), Postives = 387/403 (96.03%), Query Frame = 0
Query:   12 INHTKTLYSQRRFYHVETPFNQNI-VSGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFILIPHLATLGWGVGPGGEIINIYPYFVVGILHLISSAVLGFGGLYHALIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKALFFGGVYDTWAPGGGDVRLISNPTLNPAIIFAYVLKSPFGGDGWIVSVNNMEDLIGGHVWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTASNYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP 413
            ++H KT +SQRRFYHVETPFN +I   GRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFIL+PHLA+LGWGVGPGGEI+NI+PYFVVG++HL+SSA+LGFGG+YHALIGPDTLEESFPFFGYDWRDKNKMTTI+GIHL+LLGIGSFLLVIKA F GG+YDTWAPGGGDVR I+NPTLNP IIF Y+LKSPFGGDGW+VSVNNMEDL+GGH+W+G+ICI+GG+WHILTKPFAWARRAFVWSGEAYLSYSL ALS+MG  AS Y WYNNTAYPSEFYGPTGPE+SQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGE+IFGGETMRFWDLRAPW+EPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP
Sbjct:    1 MSHMKTSFSQRRFYHVETPFNPSIGAGGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFILLPHLASLGWGVGPGGEIVNIFPYFVVGVVHLVSSAILGFGGIYHALIGPDTLEESFPFFGYDWRDKNKMTTIIGIHLILLGIGSFLLVIKASFVGGIYDTWAPGGGDVRFINNPTLNPVIIFGYLLKSPFGGDGWLVSVNNMEDLVGGHIWVGVICISGGVWHILTKPFAWARRAFVWSGEAYLSYSLAALSLMGFIASQYAWYNNTAYPSEFYGPTGPESSQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP 403          
BLAST of Gcaud1050.t1 vs. uniprot
Match: M1K3V0_DIALT (Photosystem II CP43 reaction center protein n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1K3V0_DIALT)

HSP 1 Score: 778 bits (2008), Expect = 4.020e-282
Identity = 360/414 (86.96%), Postives = 388/414 (93.72%), Query Frame = 0
Query:    1 MKVFVHGWQLKINHTKTLYSQRRFYHVETPFNQNI-VSGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFILIPHLATLGWGVGPGGEIINIYPYFVVGILHLISSAVLGFGGLYHALIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKALFFGGVYDTWAPGGGDVRLISNPTLNPAIIFAYVLKSPFGGDGWIVSVNNMEDLIGGHVWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTASNYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP 413
            MKV  HGW  K +HTKTLYS RR+YHVETPFN  I V+GRDIESTGFAWWSGNARLINVSGKLLGAHVAHAG+MVFW GAM LFEVAHF+PEKPLYEQG IL+PHLA LGWGVGPGGEI++ YPYFVVG++H+ISSAVLGFGG+YH+LIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIG+FLLV KA+FFGG+YDTWAPGGGDVRL+ NPTLNP  IF YVLKSPFGGDGWIVSVNN+EDL+GGHVWIG+IC  GG++HI+TKPFAWARR FVWSGEAYLSYSLGALS+MG+ AS +VWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEII GGETMRFWD RAPW+EPLRGPNGLDLNKI+NDIQPWQERRAAEYMTHAP
Sbjct:    1 MKVSAHGWLHKTSHTKTLYSLRRYYHVETPFNAPITVAGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGLMVFWAGAMCLFEVAHFVPEKPLYEQGCILLPHLAGLGWGVGPGGEIVDTYPYFVVGVVHVISSAVLGFGGVYHSLIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGAFLLVAKAMFFGGIYDTWAPGGGDVRLVPNPTLNPGAIFNYVLKSPFGGDGWIVSVNNLEDLVGGHVWIGLICTLGGVFHIITKPFAWARRGFVWSGEAYLSYSLGALSLMGIIASIFVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIILGGETMRFWDARAPWIEPLRGPNGLDLNKIRNDIQPWQERRAAEYMTHAP 414          
BLAST of Gcaud1050.t1 vs. uniprot
Match: Q4G396_EMIHU (Photosystem II CP43 reaction center protein n=16 Tax=cellular organisms TaxID=131567 RepID=Q4G396_EMIHU)

HSP 1 Score: 764 bits (1973), Expect = 4.750e-277
Identity = 351/398 (88.19%), Postives = 379/398 (95.23%), Query Frame = 0
Query:   16 KTLYSQRRFYHVETPFNQNIVSGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFILIPHLATLGWGVGPGGEIINIYPYFVVGILHLISSAVLGFGGLYHALIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKALFFGGVYDTWAPGGGDVRLISNPTLNPAIIFAYVLKSPFGGDGWIVSVNNMEDLIGGHVWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTASNYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP 413
            KTL SQRRFYHVETPFN  +++GRDIESTGFAWWSGNARLINVSGKLLGAHVAHAG+MVFW GAMTLFEVAH+IPEKPLYEQG ILIPHL TLGWGVGPGGE+ ++YP+FVVG+LHLISSAVLGFGG+YH+LIGPDTLEESFPFFGYDWRDKNKMTTILGIHL+LLGIG FLLV KA F GGVYDTWAPGGGDVR+IS PTLNP IIF YVLKSPFGGDGW++SV+NMEDL+GGH+W+G +C+ GGIWHILTKPFAWARR FVWSGEAYLSYSL ALS+MGLTA+ +VWYNNTAYPSEFYGPTGPEASQ+QAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWD+RAPWVEPLRGPNGLDLNKI+NDIQPWQERRAAEYMTHAP
Sbjct:    2 KTLSSQRRFYHVETPFN-TVIAGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGLMVFWCGAMTLFEVAHYIPEKPLYEQGCILIPHLTTLGWGVGPGGEVTDVYPFFVVGVLHLISSAVLGFGGVYHSLIGPDTLEESFPFFGYDWRDKNKMTTILGIHLILLGIGCFLLVAKACFVGGVYDTWAPGGGDVRIISAPTLNPLIIFGYVLKSPFGGDGWVISVDNMEDLVGGHIWLGFLCVVGGIWHILTKPFAWARRTFVWSGEAYLSYSLAALSLMGLTAAVFVWYNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDMRAPWVEPLRGPNGLDLNKIRNDIQPWQERRAAEYMTHAP 398          
BLAST of Gcaud1050.t1 vs. uniprot
Match: A0A3G2R087_9STRA (Photosystem II CP43 reaction center protein n=12 Tax=cellular organisms TaxID=131567 RepID=A0A3G2R087_9STRA)

HSP 1 Score: 764 bits (1973), Expect = 8.620e-277
Identity = 348/414 (84.06%), Postives = 387/414 (93.48%), Query Frame = 0
Query:    1 MKVFVHGWQLKINHTKTLYSQRRFYHVETPFNQ-NIVSGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFILIPHLATLGWGVGPGGEIINIYPYFVVGILHLISSAVLGFGGLYHALIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKALFFGGVYDTWAPGGGDVRLISNPTLNPAIIFAYVLKSPFGGDGWIVSVNNMEDLIGGHVWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTASNYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP 413
            MKV   GWQ KINH K +YSQRRF+HVET F+   I + + IE+TGFAWW+GNARLIN+SGKLLGAHVAHAG+MVFW GAMTLFEV+HFIPEKPLY+QGFIL+PHLATLGWGVGPGGEI NIYPYFVVG+LHLISSAVLGFGG+YH+L GPDTLE + P FGYDWRDKNKMTTILGIHL LLGIG+FLLVIKA++ GG+YDTWAPGGGDVRL+ NPTLNP +IF+YV KSPFGGDGWIVS+NN+EDL+GGH+W+G++CI GGIWHILTKPFAWARRAFVWSGEAYLSYSL A+S+MGLTAS +VWYNNTAYPSEF+GPTGPEASQAQAFTFL+RDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWD+R+PW+EPLRGPNGLDLNKI+NDIQPWQERRAAEYMTHAP
Sbjct:    1 MKVSDCGWQHKINHMKIIYSQRRFFHVETRFDDLEITTNKTIEATGFAWWAGNARLINLSGKLLGAHVAHAGLMVFWCGAMTLFEVSHFIPEKPLYDQGFILLPHLATLGWGVGPGGEITNIYPYFVVGVLHLISSAVLGFGGIYHSLFGPDTLETNAPLFGYDWRDKNKMTTILGIHLCLLGIGAFLLVIKAMYVGGLYDTWAPGGGDVRLVKNPTLNPLVIFSYVFKSPFGGDGWIVSINNLEDLVGGHIWVGVLCITGGIWHILTKPFAWARRAFVWSGEAYLSYSLAAVSVMGLTASVFVWYNNTAYPSEFFGPTGPEASQAQAFTFLIRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDMRSPWLEPLRGPNGLDLNKIRNDIQPWQERRAAEYMTHAP 414          
BLAST of Gcaud1050.t1 vs. uniprot
Match: PSBC_GALSU (Photosystem II CP43 reaction center protein n=5 Tax=cellular organisms TaxID=131567 RepID=PSBC_GALSU)

HSP 1 Score: 761 bits (1966), Expect = 5.960e-276
Identity = 351/399 (87.97%), Postives = 377/399 (94.49%), Query Frame = 0
Query:   16 KTLYSQRRFYHVETPFNQNI-VSGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFILIPHLATLGWGVGPGGEIINIYPYFVVGILHLISSAVLGFGGLYHALIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKALFFGGVYDTWAPGGGDVRLISNPTLNPAIIFAYVLKSPFGGDGWIVSVNNMEDLIGGHVWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTASNYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP 413
            K LYSQRRFYHVE PFN  I  +GR IESTG+AWW+GNARLINVSGKLLGAHVAHAG++VFWTGAMTLFEVAHF+PEKPLYEQG IL+PHLATLGWGVGP GEII+ YPYFV+G+LHL+SSAVLGFGGLYH+LIGP+ LEES+PFFGYDWRDKNKMTTILGIHL+LLGIG+FLLVIKA+FFGGVYDTWAPGGGDVR I+NPTLNP +IF Y+LKSPFGGDGWI+SVNNMEDLIGGH+WIG+ICI GGIWHILTKPF WARRAFVWSGEAYLSYSL ALS+MG  A  YVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLG NVASAQGPTGLGKYLMRSPSGE+IFGGETMRFWDLRAPW+EPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP
Sbjct:    2 KILYSQRRFYHVEMPFNNRIEFAGRSIESTGYAWWAGNARLINVSGKLLGAHVAHAGLIVFWTGAMTLFEVAHFLPEKPLYEQGCILLPHLATLGWGVGPTGEIIDTYPYFVIGVLHLVSSAVLGFGGLYHSLIGPEILEESYPFFGYDWRDKNKMTTILGIHLILLGIGAFLLVIKAMFFGGVYDTWAPGGGDVRYINNPTLNPLVIFGYLLKSPFGGDGWIISVNNMEDLIGGHIWIGLICIGGGIWHILTKPFGWARRAFVWSGEAYLSYSLAALSLMGFIACIYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGENVASAQGPTGLGKYLMRSPSGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP 400          
BLAST of Gcaud1050.t1 vs. uniprot
Match: A0A7R7AIH9_9EUKA (Photosystem II CP43 reaction center protein n=1 Tax=Haptophyceae sp. NIES-3900 TaxID=2748608 RepID=A0A7R7AIH9_9EUKA)

HSP 1 Score: 762 bits (1967), Expect = 6.560e-276
Identity = 350/412 (84.95%), Postives = 382/412 (92.72%), Query Frame = 0
Query:    5 VHGWQLKINHTKTLYSQRRFYHVETPFNQNI---VSGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFILIPHLATLGWGVGPGGEIINIYPYFVVGILHLISSAVLGFGGLYHALIGPDTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKALFFGGVYDTWAPGGGDVRLISNPTLNPAIIFAYVLKSPFGGDGWIVSVNNMEDLIGGHVWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTASNYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAP 413
            +HGWQLK N  KTLYS RRFYHVETPFN +    V+GRDIESTGFAWW+GNARLINVSGKLLGAHVAHAG+MVFW GAM LFEVAHF+PEKPLYEQG I++PHLATLG GVGPGGEI++ YPYFVVG++HLI+SAVLGFGG+YH+LIGPDTLEESFPFFGYDWRDKNKMTTILGIHL+ LG G+F L  KA+F+GG+YDTWAPGGGDVRLI+NPTLNP +I  YVLKSPFGGDGW+VSVNNMEDL+GGH+WIG+IC  GGIWHILTKPFAWARR++VWSGEAYLSYSL A+S+MG TA  Y WYNNTAYPSEFYGPTGPEASQ+QAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWD+RAPWVEPLRGPNGLDLNKIK DIQPWQERRAAEYMTHAP
Sbjct:    1 MHGWQLKTNLMKTLYSLRRFYHVETPFNTSAGFGVAGRDIESTGFAWWAGNARLINVSGKLLGAHVAHAGLMVFWAGAMCLFEVAHFVPEKPLYEQGMIVVPHLATLGLGVGPGGEIVDTYPYFVVGVVHLIASAVLGFGGVYHSLIGPDTLEESFPFFGYDWRDKNKMTTILGIHLLFLGAGAFALTAKAVFWGGIYDTWAPGGGDVRLITNPTLNPLVIAGYVLKSPFGGDGWVVSVNNMEDLVGGHIWIGLICTVGGIWHILTKPFAWARRSYVWSGEAYLSYSLAAISLMGFTAVFYAWYNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPSGEIIFGGETMRFWDMRAPWVEPLRGPNGLDLNKIKYDIQPWQERRAAEYMTHAP 412          
The following BLAST results are available for this feature:
BLAST of Gcaud1050.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBC_PORPU6.030e-30093.96Photosystem II CP43 reaction center protein n=241 ... [more]
B7T1T1_VAULI3.840e-29189.59Photosystem II CP43 reaction center protein n=2 Ta... [more]
A0A7S6UA13_9STRA1.180e-28788.62Photosystem II CP43 reaction center protein n=49 T... [more]
B2XT20_HETAK1.680e-28787.89Photosystem II CP43 reaction center protein n=10 T... [more]
A0A220T0Q8_9RHOD9.750e-28588.83Photosystem II CP43 reaction center protein n=3 Ta... [more]
M1K3V0_DIALT4.020e-28286.96Photosystem II CP43 reaction center protein n=2 Ta... [more]
Q4G396_EMIHU4.750e-27788.19Photosystem II CP43 reaction center protein n=16 T... [more]
A0A3G2R087_9STRA8.620e-27784.06Photosystem II CP43 reaction center protein n=12 T... [more]
PSBC_GALSU5.960e-27687.97Photosystem II CP43 reaction center protein n=5 Ta... [more]
A0A7R7AIH9_9EUKA6.560e-27684.95Photosystem II CP43 reaction center protein n=1 Ta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005869Photosystem II CP43 reaction centre proteinTIGRFAMTIGR01153TIGR01153coord: 46..413
e-value: 5.5E-220
score: 728.8
IPR005869Photosystem II CP43 reaction centre proteinHAMAPMF_01496PSII_PsbC_CP43coord: 29..413
score: 52.609192
IPR044900Photosystem II CP43 reaction centre protein superfamilyGENE3D1.10.10.670photosystem ii from thermosynechococcus elongatuscoord: 317..412
e-value: 4.7E-57
score: 191.7
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 44..412
e-value: 1.8E-112
score: 376.7
IPR000932Photosystem antenna protein-likePANTHERPTHR33180PHOTOSYSTEM II CP43 REACTION CENTER PROTEINcoord: 35..413
NoneNo IPR availablePANTHERPTHR33180:SF16PHOTOSYSTEM II CP43 REACTION CENTER PROTEINcoord: 35..413
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 211..227
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 287..305
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 247..266
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..82
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 174..199
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 306..413
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 83..93
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 124..147
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 228..246
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 113..123
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..112
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..61
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 148..173
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 200..210
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 267..286
NoneNo IPR availableTMHMMTMhelixcoord: 126..148
NoneNo IPR availableTMHMMTMhelixcoord: 62..84
NoneNo IPR availableTMHMMTMhelixcoord: 173..195
NoneNo IPR availableTMHMMTMhelixcoord: 99..121
NoneNo IPR availableTMHMMTMhelixcoord: 251..273
NoneNo IPR availableTMHMMTMhelixcoord: 283..305
IPR036001Photosystem antenna protein-like superfamilySUPERFAMILY161077Photosystem II antenna protein-likecoord: 42..413

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4115_length_2566_cov_207.817778contigNODE_4115_length_2566_cov_207.817778:1322..2563 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1050.t1Gcaud1050.t1Gracilaria caudata M_176_S67 malemRNANODE_4115_length_2566_cov_207.817778 1322..2563 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1050.t1 ID=Gcaud1050.t1|Name=Gcaud1050.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=414bp
MKVFVHGWQLKINHTKTLYSQRRFYHVETPFNQNIVSGRDIESTGFAWWS
GNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFI
LIPHLATLGWGVGPGGEIINIYPYFVVGILHLISSAVLGFGGLYHALIGP
DTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKALFFGGVYD
TWAPGGGDVRLISNPTLNPAIIFAYVLKSPFGGDGWIVSVNNMEDLIGGH
VWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTAS
NYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGL
GKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPW
QERRAAEYMTHAP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005869PSII_PsbC
IPR044900PSII_PsbC_sf
IPR000932PS_antenna-like
IPR036001PS_II_antenna-like_sf