Gcaud1050.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1050.t1
Unique Name	Gcaud1050.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	414

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4115_length_2566_cov_207.817778	contig	NODE_4115_length_2566_cov_207.817778:1322..2563 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.AAC35611
Preferred name	psbC
PFAMs	PSII,Photo_RC
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02705
KEGG Pathway	ko00195,ko01100,map00195,map01100
KEGG Module	M00161
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009521,GO:0009523,GO:0009532,GO:0009533,GO:0009534,GO:0009535,GO:0009536,GO:0009539,GO:0009570,GO:0009579,GO:0010287,GO:0016020,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0098796
Evalue	1.04e-284
EggNOG OGs	28ISP@1\|root,2QR3X@2759\|Eukaryota
Description	photosynthetic electron transport in photosystem II
COG category	S
BRITE	ko00000,ko00001,ko00002,ko00194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1050	Gcaud1050	Gracilaria caudata M_176_S67 male	gene	NODE_4115_length_2566_cov_207.817778 1322..2563 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1050.t1.start1	Gcaud1050.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4115_length_2566_cov_207.817778 1322..1324 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1050.t1.CDS1	Gcaud1050.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4115_length_2566_cov_207.817778 1322..2563 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1050.t1.exon1	Gcaud1050.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4115_length_2566_cov_207.817778 1322..2563 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1050.t1.stop1	Gcaud1050.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4115_length_2566_cov_207.817778 2561..2563 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1050.t1	Gcaud1050.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4115_length_2566_cov_207.817778 1322..2563 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4115_length_2566_cov_207.817778:1322..2563+
coding sequence from alignment at NODE_4115_length_2566_cov_207.817778:1322..2563+

mRNA sequence

>Gcaud1050.t1 ID=Gcaud1050.t1|Name=Gcaud1050.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=414bp
MKVFVHGWQLKINHTKTLYSQRRFYHVETPFNQNIVSGRDIESTGFAWWS
GNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFI
LIPHLATLGWGVGPGGEIINIYPYFVVGILHLISSAVLGFGGLYHALIGP
DTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKALFFGGVYD
TWAPGGGDVRLISNPTLNPAIIFAYVLKSPFGGDGWIVSVNNMEDLIGGH
VWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTAS
NYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGL
GKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPW
QERRAAEYMTHAP*

spliced messenger RNA

>Gcaud1050.t1 ID=Gcaud1050.t1|Name=Gcaud1050.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at NODE_4115_length_2566_cov_207.817778:1322..2563+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAACCACACGAAAAC
TTTATATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATCAAA
ATATCGTAAGCGGTAGAGATATCGAATCTACAGGATTTGCATGGTGGTCT
GGCAATGCAAGATTAATCAATGTATCAGGAAAACTCTTAGGTGCTCATGT
TGCACATGCTGGTATAATGGTTTTTTGGACAGGAGCAATGACGCTATTTG
AAGTTGCCCATTTTATACCAGAAAAACCTTTATATGAACAAGGTTTCATT
CTAATACCTCATTTAGCAACATTAGGATGGGGAGTTGGTCCAGGCGGAGA
AATAATTAACATATACCCATACTTTGTAGTAGGTATACTACATTTAATAT
CTTCTGCAGTCCTAGGATTTGGAGGATTATATCACGCTTTAATTGGACCA
GACACATTAGAAGAGTCTTTCCCTTTCTTTGGTTATGACTGGAGAGATAA
AAACAAAATGACAACAATACTTGGTATACACCTTGTATTATTAGGCATAG
GATCATTTTTACTTGTAATTAAGGCTTTATTTTTTGGTGGTGTGTACGAT
ACATGGGCTCCAGGAGGTGGAGATGTAAGATTGATCAGTAATCCAACTTT
AAACCCTGCAATTATATTTGCATACGTACTGAAATCTCCATTTGGAGGCG
ACGGTTGGATAGTTAGCGTGAATAATATGGAAGATTTAATTGGTGGACAC
GTTTGGATAGGAATAATATGCATTGCAGGAGGAATATGGCATATTCTTAC
TAAACCATTCGCTTGGGCACGAAGAGCATTTGTTTGGTCCGGTGAAGCAT
ACTTATCTTATAGCTTAGGTGCTTTATCTATCATGGGATTAACAGCATCT
AATTATGTATGGTATAACAACACAGCATATCCAAGCGAATTTTATGGTCC
CACAGGACCAGAAGCATCTCAGGCGCAAGCTTTCACATTTCTAGTACGTG
ATCAAAGATTAGGAGCAAATGTAGCATCTGCGCAAGGCCCTACGGGATTA
GGAAAATATTTAATGAGATCACCAAGTGGAGAAATCATATTTGGAGGAGA
AACAATGCGTTTTTGGGATCTGAGAGCTCCTTGGGTAGAACCATTACGAG
GGCCTAATGGATTAGATCTAAACAAAATCAAAAATGATATACAACCATGG
CAAGAAAGAAGAGCTGCAGAATATATGACACATGCACCATGA

protein sequence of Gcaud1050.t1

>Gcaud1050.t1 ID=Gcaud1050.t1|Name=Gcaud1050.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=414bp
MKVFVHGWQLKINHTKTLYSQRRFYHVETPFNQNIVSGRDIESTGFAWWS
GNARLINVSGKLLGAHVAHAGIMVFWTGAMTLFEVAHFIPEKPLYEQGFI
LIPHLATLGWGVGPGGEIINIYPYFVVGILHLISSAVLGFGGLYHALIGP
DTLEESFPFFGYDWRDKNKMTTILGIHLVLLGIGSFLLVIKALFFGGVYD
TWAPGGGDVRLISNPTLNPAIIFAYVLKSPFGGDGWIVSVNNMEDLIGGH
VWIGIICIAGGIWHILTKPFAWARRAFVWSGEAYLSYSLGALSIMGLTAS
NYVWYNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVASAQGPTGL
GKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDLNKIKNDIQPW
QERRAAEYMTHAP*

mRNA from alignment at NODE_4115_length_2566_cov_207.817778:1322..2563+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1050.t1 ID=Gcaud1050.t1|Name=Gcaud1050.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at NODE_4115_length_2566_cov_207.817778:1322..2563+ (Gracilaria caudata M_176_S67 male)
ATGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAACCACACGAAAAC
TTTATATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATCAAA
ATATCGTAAGCGGTAGAGATATCGAATCTACAGGATTTGCATGGTGGTCT
GGCAATGCAAGATTAATCAATGTATCAGGAAAACTCTTAGGTGCTCATGT
TGCACATGCTGGTATAATGGTTTTTTGGACAGGAGCAATGACGCTATTTG
AAGTTGCCCATTTTATACCAGAAAAACCTTTATATGAACAAGGTTTCATT
CTAATACCTCATTTAGCAACATTAGGATGGGGAGTTGGTCCAGGCGGAGA
AATAATTAACATATACCCATACTTTGTAGTAGGTATACTACATTTAATAT
CTTCTGCAGTCCTAGGATTTGGAGGATTATATCACGCTTTAATTGGACCA
GACACATTAGAAGAGTCTTTCCCTTTCTTTGGTTATGACTGGAGAGATAA
AAACAAAATGACAACAATACTTGGTATACACCTTGTATTATTAGGCATAG
GATCATTTTTACTTGTAATTAAGGCTTTATTTTTTGGTGGTGTGTACGAT
ACATGGGCTCCAGGAGGTGGAGATGTAAGATTGATCAGTAATCCAACTTT
AAACCCTGCAATTATATTTGCATACGTACTGAAATCTCCATTTGGAGGCG
ACGGTTGGATAGTTAGCGTGAATAATATGGAAGATTTAATTGGTGGACAC
GTTTGGATAGGAATAATATGCATTGCAGGAGGAATATGGCATATTCTTAC
TAAACCATTCGCTTGGGCACGAAGAGCATTTGTTTGGTCCGGTGAAGCAT
ACTTATCTTATAGCTTAGGTGCTTTATCTATCATGGGATTAACAGCATCT
AATTATGTATGGTATAACAACACAGCATATCCAAGCGAATTTTATGGTCC
CACAGGACCAGAAGCATCTCAGGCGCAAGCTTTCACATTTCTAGTACGTG
ATCAAAGATTAGGAGCAAATGTAGCATCTGCGCAAGGCCCTACGGGATTA
GGAAAATATTTAATGAGATCACCAAGTGGAGAAATCATATTTGGAGGAGA
AACAATGCGTTTTTGGGATCTGAGAGCTCCTTGGGTAGAACCATTACGAG
GGCCTAATGGATTAGATCTAAACAAAATCAAAAATGATATACAACCATGG
CAAGAAAGAAGAGCTGCAGAATATATGACACATGCACCATGA

Coding sequence (CDS) from alignment at NODE_4115_length_2566_cov_207.817778:1322..2563+

>Gcaud1050.t1 ID=Gcaud1050.t1|Name=Gcaud1050.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1242bp|location=Sequence derived from alignment at NODE_4115_length_2566_cov_207.817778:1322..2563+ (Gracilaria caudata M_176_S67 male)
ATGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAACCACACGAAAAC
TTTATATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATCAAA
ATATCGTAAGCGGTAGAGATATCGAATCTACAGGATTTGCATGGTGGTCT
GGCAATGCAAGATTAATCAATGTATCAGGAAAACTCTTAGGTGCTCATGT
TGCACATGCTGGTATAATGGTTTTTTGGACAGGAGCAATGACGCTATTTG
AAGTTGCCCATTTTATACCAGAAAAACCTTTATATGAACAAGGTTTCATT
CTAATACCTCATTTAGCAACATTAGGATGGGGAGTTGGTCCAGGCGGAGA
AATAATTAACATATACCCATACTTTGTAGTAGGTATACTACATTTAATAT
CTTCTGCAGTCCTAGGATTTGGAGGATTATATCACGCTTTAATTGGACCA
GACACATTAGAAGAGTCTTTCCCTTTCTTTGGTTATGACTGGAGAGATAA
AAACAAAATGACAACAATACTTGGTATACACCTTGTATTATTAGGCATAG
GATCATTTTTACTTGTAATTAAGGCTTTATTTTTTGGTGGTGTGTACGAT
ACATGGGCTCCAGGAGGTGGAGATGTAAGATTGATCAGTAATCCAACTTT
AAACCCTGCAATTATATTTGCATACGTACTGAAATCTCCATTTGGAGGCG
ACGGTTGGATAGTTAGCGTGAATAATATGGAAGATTTAATTGGTGGACAC
GTTTGGATAGGAATAATATGCATTGCAGGAGGAATATGGCATATTCTTAC
TAAACCATTCGCTTGGGCACGAAGAGCATTTGTTTGGTCCGGTGAAGCAT
ACTTATCTTATAGCTTAGGTGCTTTATCTATCATGGGATTAACAGCATCT
AATTATGTATGGTATAACAACACAGCATATCCAAGCGAATTTTATGGTCC
CACAGGACCAGAAGCATCTCAGGCGCAAGCTTTCACATTTCTAGTACGTG
ATCAAAGATTAGGAGCAAATGTAGCATCTGCGCAAGGCCCTACGGGATTA
GGAAAATATTTAATGAGATCACCAAGTGGAGAAATCATATTTGGAGGAGA
AACAATGCGTTTTTGGGATCTGAGAGCTCCTTGGGTAGAACCATTACGAG
GGCCTAATGGATTAGATCTAAACAAAATCAAAAATGATATACAACCATGG
CAAGAAAGAAGAGCTGCAGAATATATGACACATGCACCATGA