Gcaud10111.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud10111.t2
Unique NameGcaud10111.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length368
Homology
BLAST of Gcaud10111.t2 vs. uniprot
Match: A0A2V3IXZ4_9FLOR (Polycomb protein suz12-B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXZ4_9FLOR)

HSP 1 Score: 345 bits (884), Expect = 4.320e-113
Identity = 203/420 (48.33%), Postives = 265/420 (63.10%), Query Frame = 0
Query:    5 SSLVASKELHPQQKNVRESFHYTRRLYYTLAWRHRHKRIFLQRTLRGSREQRQKSGTF-------PSIRYVSNEPHVTWSQRVPQLRCLWCE--------------------------------GPREAALISSDGVSHA--------------YNLEYVYYNASGFHNPVRKRARTNRSPSHCTILLRE---PERQLRQACNDQERDSET--EKKKHVAETQDADYRPTKPTKRAADNKKKKKTGKPAFKSLSAAVQEKKLYNSVVQHELQVEEYENGADSDAESEDQEELKWRLRVVDDEIEEYVDTIAVEKLFMNLWNQFVKMEHPVKSDREIAPACLNFVHKYRKTLIRYNLEVTFLRHLTEFTRMGLLDAVSVFDIFQVLRNRDLSGPSDGSDEPTFLYAERLKREGPEGKRIRY 366
            SS  + +E HP      E+FH +RRLY  LA +HRH+ IFL RTLR + +  Q+   +       P + Y S+E  V W++ V +LRCLWC                                    +A+LI S  +S                Y+ EY Y + S F N VR+R RT  +P H + LL +   P R   +A +   RDS     KKK + +T DADYRPT+ TKR ++ KK++K G PAF+S+SAAVQ  +LY+SV+Q  L ++ Y+ GADSDAES+DQ+ELKWR  +V+DEIEE+ DTIAVEKLFM LWNQF KME+P+++DR++APACL FV  YRKTL RY+L+VTFLRHL EFTRMG+LDA SVF+I QVLRN+D+SG SDG DEP FLYAERL+ +G +GKR+RY
Sbjct:   10 SSDPSCRETHPS-----EAFHASRRLYSALARKHRHEPIFLPRTLRRTFKHPQRDTPYHCFRDEVPDVTYKSSETGVHWNEVVRELRCLWCRDLFYRFSGADELVHHLRTFHSKFHYEVLVSLPNTGQASLILSMALSRGGKTDSLSAHETLSDYDKEYEYVDVSAFLNAVRRRTRTKTAPPHRSFLLCDSPRPSRAASRAASRATRDSINLDVKKKAIDKTADADYRPTRVTKRLSEGKKRRKAGNPAFRSISAAVQNDRLYHSVLQQPLNLQRYDEGADSDAESDDQDELKWRSEIVEDEIEEFTDTIAVEKLFMCLWNQFAKMENPIRADRDVAPACLRFVQLYRKTLKRYSLQVTFLRHLKEFTRMGVLDADSVFEIMQVLRNQDMSGASDGRDEPRFLYAERLRLDGSDGKRVRY 424          
BLAST of Gcaud10111.t2 vs. uniprot
Match: R7QQL2_CHOCR (VEFS-Box domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQL2_CHOCR)

HSP 1 Score: 164 bits (415), Expect = 2.190e-44
Identity = 91/186 (48.92%), Postives = 130/186 (69.89%), Query Frame = 0
Query:  176 TKPTK-RAADNKKKKKTGKPAFKSLSAAVQEKKLYNSVVQHELQVEEYENGADSDAESEDQEELKWRLRVVDDEIEEYVDTIAVEKLFMNLWNQFVKMEHPVKSDREIAPACLNFVHKYRKTLIRYNLEVTFLRHLTEFTRMGLLDAVSVFDIFQVLRNRDLSGPSDGSDEPTFLYAERLKREGPE 360
            TKPTK R+A  K +K T  PA+K+ + AV+EK+L++S++QH + +EE++   DSD + E  EE +WRL + DDE+EE+ DT+ VEKL MNLWNQF+ M++   +D  +APAC  F  KYR+ + ++NLEVTFLRHLTE  R+GLLD+ ++ D   +LRNRD   P    +   FL+AER+ R+  E
Sbjct:  114 TKPTKTRSASVKVEKAT--PAYKNAAHAVKEKRLWHSILQHPVSLEEFQAEDDSDEDRE--EEYEWRLHLADDEVEEFEDTLPVEKLLMNLWNQFLVMDYHAYADHRVAPACNAFAKKYRRIIQKFNLEVTFLRHLTELGRIGLLDSDAICDTGMILRNRDTE-PVKEEEGARFLFAERIIRQADE 294          
The following BLAST results are available for this feature:
BLAST of Gcaud10111.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IXZ4_9FLOR4.320e-11348.33Polycomb protein suz12-B n=1 Tax=Gracilariopsis ch... [more]
R7QQL2_CHOCR2.190e-4448.92VEFS-Box domain-containing protein n=1 Tax=Chondru... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019135Polycomb protein, VEFS-BoxPFAMPF09733VEFS-Boxcoord: 202..325
e-value: 4.3E-17
score: 62.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..196
NoneNo IPR availablePANTHERPTHR22597POLYCOMB GROUP PROTEINcoord: 145..332
NoneNo IPR availablePANTHERPTHR22597:SF0POLYCOMB PROTEIN SUZ12coord: 145..332

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_87_length_53860_cov_4.505235contigNODE_87_length_53860_cov_4.505235:40250..41579 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10111.t2Gcaud10111.t2Gracilaria caudata M_176_S67 malemRNANODE_87_length_53860_cov_4.505235 40250..41579 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud10111.t2 ID=Gcaud10111.t2|Name=Gcaud10111.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=368bp
MPQTSSLVASKELHPQQKNVRESFHYTRRLYYTLAWRHRHKRIFLQRTLR
GSREQRQKSGTFPSIRYVSNEPHVTWSQRVPQLRCLWCEGPREAALISSD
GVSHAYNLEYVYYNASGFHNPVRKRARTNRSPSHCTILLREPERQLRQAC
NDQERDSETEKKKHVAETQDADYRPTKPTKRAADNKKKKKTGKPAFKSLS
AAVQEKKLYNSVVQHELQVEEYENGADSDAESEDQEELKWRLRVVDDEIE
EYVDTIAVEKLFMNLWNQFVKMEHPVKSDREIAPACLNFVHKYRKTLIRY
NLEVTFLRHLTEFTRMGLLDAVSVFDIFQVLRNRDLSGPSDGSDEPTFLY
AERLKREGPEGKRIRYA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019135Polycomb_protein_VEFS-Box