Gcaud10111.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10111.t2
Unique Name	Gcaud10111.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	368

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_87_length_53860_cov_4.505235	contig	NODE_87_length_53860_cov_4.505235:40250..41579 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7209.EJD75529.1
PFAMs	VEFS-Box
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11463
Evalue	0.000342
EggNOG OGs	KOG2350@1\|root,KOG2350@2759\|Eukaryota,392NH@33154\|Opisthokonta,3C80R@33208\|Metazoa,3DP1F@33213\|Bilateria,40HGG@6231\|Nematoda,1M0FW@119089\|Chromadorea
Description	VEFS-Box of polycomb protein
COG category	S
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10111	Gcaud10111	Gracilaria caudata M_176_S67 male	gene	NODE_87_length_53860_cov_4.505235 40250..41579 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10111.t2	Gcaud10111.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_87_length_53860_cov_4.505235 40250..41579 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10111.t2.start1	Gcaud10111.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_87_length_53860_cov_4.505235 40250..40252 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10111.t2.CDS1	Gcaud10111.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_87_length_53860_cov_4.505235 40250..40324 +
Gcaud10111.t2.CDS2	Gcaud10111.t2.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_87_length_53860_cov_4.505235 40392..40584 +
Gcaud10111.t2.CDS3	Gcaud10111.t2.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_87_length_53860_cov_4.505235 40685..40695 +
Gcaud10111.t2.CDS4	Gcaud10111.t2.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_87_length_53860_cov_4.505235 40755..41579 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10111.t2.exon1	Gcaud10111.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_87_length_53860_cov_4.505235 40250..40324 +
Gcaud10111.t2.exon2	Gcaud10111.t2.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_87_length_53860_cov_4.505235 40392..40584 +
Gcaud10111.t2.exon3	Gcaud10111.t2.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_87_length_53860_cov_4.505235 40685..40695 +
Gcaud10111.t2.exon4	Gcaud10111.t2.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_87_length_53860_cov_4.505235 40755..41579 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10111.t2.intron1	Gcaud10111.t2.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_87_length_53860_cov_4.505235 40325..40391 +
Gcaud10111.t2.intron2	Gcaud10111.t2.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_87_length_53860_cov_4.505235 40585..40684 +
Gcaud10111.t2.intron3	Gcaud10111.t2.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_87_length_53860_cov_4.505235 40696..40754 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10111.t2.stop1	Gcaud10111.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_87_length_53860_cov_4.505235 41577..41579 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_87_length_53860_cov_4.505235:40250..41579+
coding sequence from alignment at NODE_87_length_53860_cov_4.505235:40250..41579+

mRNA sequence

>Gcaud10111.t2 ID=Gcaud10111.t2|Name=Gcaud10111.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=368bp
MPQTSSLVASKELHPQQKNVRESFHYTRRLYYTLAWRHRHKRIFLQRTLR
GSREQRQKSGTFPSIRYVSNEPHVTWSQRVPQLRCLWCEGPREAALISSD
GVSHAYNLEYVYYNASGFHNPVRKRARTNRSPSHCTILLREPERQLRQAC
NDQERDSETEKKKHVAETQDADYRPTKPTKRAADNKKKKKTGKPAFKSLS
AAVQEKKLYNSVVQHELQVEEYENGADSDAESEDQEELKWRLRVVDDEIE
EYVDTIAVEKLFMNLWNQFVKMEHPVKSDREIAPACLNFVHKYRKTLIRY
NLEVTFLRHLTEFTRMGLLDAVSVFDIFQVLRNRDLSGPSDGSDEPTFLY
AERLKREGPEGKRIRYA*

spliced messenger RNA

>Gcaud10111.t2 ID=Gcaud10111.t2|Name=Gcaud10111.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:40250..41579+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCAAACTTCCTCTCTTGTAGCTTCCAAAGAGCTACATCCGCAGCA
GAAAAACGTGCGGGAATCGTTTCACTACACTCGTCGTCTATATTATACTC
TAGCGTGGCGTCATCGCCACAAACGTATCTTCCTCCAACGCACATTGCGC
GGAAGCCGTGAACAACGCCAGAAATCAGGCACATTCCCGAGCATCAGATA
TGTCTCTAATGAGCCCCATGTCACCTGGAGCCAACGCGTACCACAACTGC
GATGCCTGTGGTGTGAAGGGCCAAGAGAAGCCGCCCTGATCTCATCTGAT
GGGGTTTCACATGCGTATAATCTCGAATACGTATATTACAATGCTTCAGG
CTTCCATAACCCTGTTAGAAAGCGCGCAAGAACGAACCGGTCACCGTCGC
ATTGCACCATTCTTCTTCGAGAGCCGGAGAGACAACTTCGTCAGGCGTGC
AACGACCAGGAAAGAGATTCAGAAACAGAAAAGAAGAAGCACGTTGCTGA
GACCCAAGATGCAGACTACCGCCCTACGAAGCCTACCAAACGAGCTGCGG
ACAATAAGAAGAAAAAGAAGACGGGAAAACCCGCCTTCAAAAGTCTTTCC
GCTGCTGTCCAGGAAAAGAAGCTATACAATTCTGTTGTACAACATGAACT
ACAAGTGGAAGAATATGAGAACGGCGCCGATTCAGATGCCGAGAGCGAGG
ACCAGGAGGAACTGAAATGGAGATTACGAGTGGTAGATGACGAAATTGAA
GAATATGTAGACACCATTGCGGTCGAGAAACTGTTCATGAATCTGTGGAA
CCAATTTGTGAAAATGGAGCACCCGGTCAAGTCTGACAGAGAGATTGCTC
CAGCGTGTCTAAATTTCGTGCACAAGTATCGCAAAACCCTGATTCGGTAT
AATCTTGAAGTAACTTTCCTTCGACATCTCACGGAGTTCACGCGAATGGG
TTTGCTCGACGCTGTTAGTGTTTTTGATATATTCCAGGTTCTGAGAAATC
GTGATTTGTCGGGGCCATCAGATGGTAGTGATGAGCCAACATTCTTATAC
GCAGAAAGACTTAAAAGAGAGGGTCCGGAAGGAAAACGAATTCGATACGC
TTGA

protein sequence of Gcaud10111.t2

>Gcaud10111.t2 ID=Gcaud10111.t2|Name=Gcaud10111.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=368bp
MPQTSSLVASKELHPQQKNVRESFHYTRRLYYTLAWRHRHKRIFLQRTLR
GSREQRQKSGTFPSIRYVSNEPHVTWSQRVPQLRCLWCEGPREAALISSD
GVSHAYNLEYVYYNASGFHNPVRKRARTNRSPSHCTILLREPERQLRQAC
NDQERDSETEKKKHVAETQDADYRPTKPTKRAADNKKKKKTGKPAFKSLS
AAVQEKKLYNSVVQHELQVEEYENGADSDAESEDQEELKWRLRVVDDEIE
EYVDTIAVEKLFMNLWNQFVKMEHPVKSDREIAPACLNFVHKYRKTLIRY
NLEVTFLRHLTEFTRMGLLDAVSVFDIFQVLRNRDLSGPSDGSDEPTFLY
AERLKREGPEGKRIRYA*

mRNA from alignment at NODE_87_length_53860_cov_4.505235:40250..41579+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10111.t2 ID=Gcaud10111.t2|Name=Gcaud10111.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1330bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:40250..41579+ (Gracilaria caudata M_176_S67 male)
ATGCCTCAAACTTCCTCTCTTGTAGCTTCCAAAGAGCTACATCCGCAGCA
GAAAAACGTGCGGGAATCGTTTCACGTACGTAGTTCACAGTACCGTTTTC
ATGTCTTGCAAATGTCTAACAATGTGCGCTTTCGACATCCAGTACACTCG
TCGTCTATATTATACTCTAGCGTGGCGTCATCGCCACAAACGTATCTTCC
TCCAACGCACATTGCGCGGAAGCCGTGAACAACGCCAGAAATCAGGCACA
TTCCCGAGCATCAGATATGTCTCTAATGAGCCCCATGTCACCTGGAGCCA
ACGCGTACCACAACTGCGATGCCTGTGGTGTGAAGGTAAGTTTTTTCGCT
TCTCAAGTGGTATGGAGCTGCTGAATCATTTGCAAACATGCCATGGAAGG
TTCGCGTTTGAATACATTGATTCCGGAAAGAGCAGGGCCAAGAGAAGTAA
GTCTGGTAAAGACACTTCGCCTATCGTGCAACTAAAACTGCAACATGGAG
AACAGGCCGCCCTGATCTCATCTGATGGGGTTTCACATGCGTATAATCTC
GAATACGTATATTACAATGCTTCAGGCTTCCATAACCCTGTTAGAAAGCG
CGCAAGAACGAACCGGTCACCGTCGCATTGCACCATTCTTCTTCGAGAGC
CGGAGAGACAACTTCGTCAGGCGTGCAACGACCAGGAAAGAGATTCAGAA
ACAGAAAAGAAGAAGCACGTTGCTGAGACCCAAGATGCAGACTACCGCCC
TACGAAGCCTACCAAACGAGCTGCGGACAATAAGAAGAAAAAGAAGACGG
GAAAACCCGCCTTCAAAAGTCTTTCCGCTGCTGTCCAGGAAAAGAAGCTA
TACAATTCTGTTGTACAACATGAACTACAAGTGGAAGAATATGAGAACGG
CGCCGATTCAGATGCCGAGAGCGAGGACCAGGAGGAACTGAAATGGAGAT
TACGAGTGGTAGATGACGAAATTGAAGAATATGTAGACACCATTGCGGTC
GAGAAACTGTTCATGAATCTGTGGAACCAATTTGTGAAAATGGAGCACCC
GGTCAAGTCTGACAGAGAGATTGCTCCAGCGTGTCTAAATTTCGTGCACA
AGTATCGCAAAACCCTGATTCGGTATAATCTTGAAGTAACTTTCCTTCGA
CATCTCACGGAGTTCACGCGAATGGGTTTGCTCGACGCTGTTAGTGTTTT
TGATATATTCCAGGTTCTGAGAAATCGTGATTTGTCGGGGCCATCAGATG
GTAGTGATGAGCCAACATTCTTATACGCAGAAAGACTTAAAAGAGAGGGT
CCGGAAGGAAAACGAATTCGATACGCTTGA

Coding sequence (CDS) from alignment at NODE_87_length_53860_cov_4.505235:40250..41579+

>Gcaud10111.t2 ID=Gcaud10111.t2|Name=Gcaud10111.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1104bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:40250..41579+ (Gracilaria caudata M_176_S67 male)
ATGCCTCAAACTTCCTCTCTTGTAGCTTCCAAAGAGCTACATCCGCAGCA
GAAAAACGTGCGGGAATCGTTTCACTACACTCGTCGTCTATATTATACTC
TAGCGTGGCGTCATCGCCACAAACGTATCTTCCTCCAACGCACATTGCGC
GGAAGCCGTGAACAACGCCAGAAATCAGGCACATTCCCGAGCATCAGATA
TGTCTCTAATGAGCCCCATGTCACCTGGAGCCAACGCGTACCACAACTGC
GATGCCTGTGGTGTGAAGGGCCAAGAGAAGCCGCCCTGATCTCATCTGAT
GGGGTTTCACATGCGTATAATCTCGAATACGTATATTACAATGCTTCAGG
CTTCCATAACCCTGTTAGAAAGCGCGCAAGAACGAACCGGTCACCGTCGC
ATTGCACCATTCTTCTTCGAGAGCCGGAGAGACAACTTCGTCAGGCGTGC
AACGACCAGGAAAGAGATTCAGAAACAGAAAAGAAGAAGCACGTTGCTGA
GACCCAAGATGCAGACTACCGCCCTACGAAGCCTACCAAACGAGCTGCGG
ACAATAAGAAGAAAAAGAAGACGGGAAAACCCGCCTTCAAAAGTCTTTCC
GCTGCTGTCCAGGAAAAGAAGCTATACAATTCTGTTGTACAACATGAACT
ACAAGTGGAAGAATATGAGAACGGCGCCGATTCAGATGCCGAGAGCGAGG
ACCAGGAGGAACTGAAATGGAGATTACGAGTGGTAGATGACGAAATTGAA
GAATATGTAGACACCATTGCGGTCGAGAAACTGTTCATGAATCTGTGGAA
CCAATTTGTGAAAATGGAGCACCCGGTCAAGTCTGACAGAGAGATTGCTC
CAGCGTGTCTAAATTTCGTGCACAAGTATCGCAAAACCCTGATTCGGTAT
AATCTTGAAGTAACTTTCCTTCGACATCTCACGGAGTTCACGCGAATGGG
TTTGCTCGACGCTGTTAGTGTTTTTGATATATTCCAGGTTCTGAGAAATC
GTGATTTGTCGGGGCCATCAGATGGTAGTGATGAGCCAACATTCTTATAC
GCAGAAAGACTTAAAAGAGAGGGTCCGGAAGGAAAACGAATTCGATACGC
TTGA