Gcaud1008.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1008.t1
Unique NameGcaud1008.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length312
Homology
BLAST of Gcaud1008.t1 vs. uniprot
Match: A0A2V3IRV0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRV0_9FLOR)

HSP 1 Score: 149 bits (376), Expect = 1.120e-37
Identity = 100/279 (35.84%), Postives = 156/279 (55.91%), Query Frame = 0
Query:    2 TSQMVQRRLVLEDFSSPINVLSFVFRRVTGNRSAE-SEDSCPQTPYHGL---SKWTYGNLMFMGVLIVLIQFLFIFLATNQSKAHKLRLEAVPVFEFEDRGCEYLSQPGVSTCDYVPLTEKPGFDSRATIQICSTNTVNVS-NPSFVSDSFFFLGFKVLNIGRVEVIVGNRNMTNTWIQSTEIGVYVRESKKFYVGMQDVKHETLLSALLNRLERTNLTVLTSATSHLEVWSETSETVGDRLQRRDQSNMDFRTRNLNKTSVSVLVDASNVELRETPLG 275
            + Q+V RR +L  FS+PIN+LS +  ++   +SA  S +      +  L   SK  +  L+ +G+L V ++FLFIFLATNQ+K +  +L+ VPVFEFEDRGCE ++ P + +C     TEK GF++   +QICS+ TV+ +     +S S   + F +L+   V+VIV  R +    ++ T IGV + ES   Y G+Q+V  ++LL AL NR  R+N T+L       + +++ +   G  +     +       N    + S+LV   NV+LRET L 
Sbjct:   93 SKQVVFRRHLLNSFSNPINLLSVLVNKLQSKQSASTSTEGTQNLEWKALTPSSKRNFTLLLLLGLLTVFVEFLFIFLATNQNKMYAFQLDEVPVFEFEDRGCERIASPVIDSCIQESWTEKAGFNTHGYLQICSSQTVSAAVEDEKLSKSNGIVSFVILDTDGVDVIVRYREINA--VERTTIGV-ILESGSVYQGLQNVSSKSLLFALSNRFRRSNATIL-------DTFAQDNMDSGAGILENPPTEQ-----NAKPDAASILVSLENVDLRETHLS 356          
BLAST of Gcaud1008.t1 vs. uniprot
Match: A0A2V3J1Z3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1Z3_9FLOR)

HSP 1 Score: 143 bits (360), Expect = 1.920e-35
Identity = 103/271 (38.01%), Postives = 153/271 (56.46%), Query Frame = 0
Query:   11 VLEDFSSPINVLSFVFRRVTGNRSAESEDSCPQT-PYHGLS---KWTYGNLMFMGVLIVLIQFLFIFLATNQSKAHKLRLEAVPVFEFEDRGCEYLSQPGVSTCDYVPLTEKPGFDSRATIQICSTNTVNVSNPSFVSDS-----FFFLGFKVLNIGRVEVIVGNRNMTNTWIQSTEIGVYVRESKKFYVGMQDVKHETLLSALLNRLERTNLTVLTSATSHLEVWSETSETVGDRLQRRDQSNMDFRTRNLNKTSVSVLVDASNVELRET 272
            +L  FS+PIN+LS    ++    SA +     Q   ++ LS   K TY     MG+L + ++FLFIFLATNQ+K + L+LE VP+FEFEDRGC+ ++ P   +C   PLTEK GFDSRA +QICST ++ + NP  V+ +     +  + F +L+   V+V V  R +  T  QS  I V + E    Y G+ +V  +++LSAL NRL R+N TVL       + +++ + T  D        N+    +     + SV+VD  N++LRET
Sbjct:   94 LLNSFSNPINLLSCFIEKLRSRFSASAPVGGTQNLEWNTLSRSTKRTYTAYFLMGLLTIFVEFLFIFLATNQNKVYDLQLE-VPIFEFEDRGCDRIASPVTDSCIQQPLTEKAGFDSRAYLQICSTLSIAL-NPEGVASTLGNPNYGLVLFALLDTDGVDVTVMYRQINMT--QSANIAV-ILEDGDVYQGLMNVSAKSILSALSNRLRRSNATVL-------DAYAKDNITEDD-----SAYNLSITEQIGMPDTASVIVDLENLDLRET 347          
BLAST of Gcaud1008.t1 vs. uniprot
Match: A0A2V3J847_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J847_9FLOR)

HSP 1 Score: 132 bits (332), Expect = 1.490e-31
Identity = 97/292 (33.22%), Postives = 149/292 (51.03%), Query Frame = 0
Query:    6 VQRRLVLEDFSSPINVLSFVFRRVTGNRSAESEDSCPQTPYHGLS----KWTYGNLMFMGVLIVLIQFLFIFLATNQSKAHKLRLEAVPVFEFEDRGCEYLSQPGVSTCDYVPLTEKPGFDSRATIQICSTNTVNVSNPSFVSDSFFFLGFKVLNIGRVEVIVGNRNMTNTWIQSTEIGVYVRESKKFYVGMQDVKHETLLSALLNRLERTNLTVLTS-ATSHLEVWSETSETVGDRLQRRDQSNMDFRTRNLNKTSVSVLVDASNVELRETPLGPYILTEEEDVDQQEYVM 292
            + RR VLE FS+P+ +  F+                      G S    K TY  L  MG+L V  +F+FIFLATNQ+  + ++L+ VP+FEF+DRGCE++  P  + C  VPLTEKPGF+ R  +QICS+      N +        +    LN   V   V  R  T +   +  +G Y+ ES   YVGMQ    E + +ALL+RLERTN+TVL++    ++  + E  E+    L+R +++  + +          VL D   V+L ET +G  +  +    +++ ++M
Sbjct:   89 ILRRHVLETFSNPLTL--FLLXXXXXXXXXXXXXXXXXXXXXGSSSRKAKITYAALCAMGLLTVFAEFVFIFLATNQNGVYDVQLDGVPIFEFDDRGCEFVGPPTWNACIQVPLTEKPGFNPRGALQICSSVVFRGDNATDGQHDVHLI--LALNEYMVTATVNYREWTTS--MNFRMG-YMNESGAMYVGMQSTSAEQIKAALLHRLERTNVTVLSAFPEENVARFGEDMESTKWGLRRPERT--ERQASQAQALVAGVLGDVRLVDLNETTIGSVLFQDSSSEEERVHLM 371          
The following BLAST results are available for this feature:
BLAST of Gcaud1008.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IRV0_9FLOR1.120e-3735.84Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J1Z3_9FLOR1.920e-3538.01Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J847_9FLOR1.490e-3133.22Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..311
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..75
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 76..311
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..53
NoneNo IPR availableTMHMMTMhelixcoord: 54..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4041_length_2648_cov_5.304654contigNODE_4041_length_2648_cov_5.304654:99..1295 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1008.t1Gcaud1008.t1Gracilaria caudata M_176_S67 malemRNANODE_4041_length_2648_cov_5.304654 99..1295 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1008.t1 ID=Gcaud1008.t1|Name=Gcaud1008.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=312bp
MTSQMVQRRLVLEDFSSPINVLSFVFRRVTGNRSAESEDSCPQTPYHGLS
KWTYGNLMFMGVLIVLIQFLFIFLATNQSKAHKLRLEAVPVFEFEDRGCE
YLSQPGVSTCDYVPLTEKPGFDSRATIQICSTNTVNVSNPSFVSDSFFFL
GFKVLNIGRVEVIVGNRNMTNTWIQSTEIGVYVRESKKFYVGMQDVKHET
LLSALLNRLERTNLTVLTSATSHLEVWSETSETVGDRLQRRDQSNMDFRT
RNLNKTSVSVLVDASNVELRETPLGPYILTEEEDVDQQEYVMQISQTDKS
EGDGDELHARD*
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