Gcaud1008.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1008.t1
Unique Name	Gcaud1008.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	312

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4041_length_2648_cov_5.304654	contig	NODE_4041_length_2648_cov_5.304654:99..1295 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1008	Gcaud1008	Gracilaria caudata M_176_S67 male	gene	NODE_4041_length_2648_cov_5.304654 99..1295 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1008.t1	Gcaud1008.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4041_length_2648_cov_5.304654 99..1295 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1008.t1.start1	Gcaud1008.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4041_length_2648_cov_5.304654 99..101 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1008.t1.CDS1	Gcaud1008.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4041_length_2648_cov_5.304654 99..975 +
Gcaud1008.t1.CDS2	Gcaud1008.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_4041_length_2648_cov_5.304654 1237..1295 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1008.t1.exon1	Gcaud1008.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4041_length_2648_cov_5.304654 99..975 +
Gcaud1008.t1.exon2	Gcaud1008.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_4041_length_2648_cov_5.304654 1237..1295 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1008.t1.intron1	Gcaud1008.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_4041_length_2648_cov_5.304654 976..1236 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1008.t1.stop1	Gcaud1008.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4041_length_2648_cov_5.304654 1293..1295 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4041_length_2648_cov_5.304654:99..1295+
coding sequence from alignment at NODE_4041_length_2648_cov_5.304654:99..1295+

mRNA sequence

>Gcaud1008.t1 ID=Gcaud1008.t1|Name=Gcaud1008.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=312bp
MTSQMVQRRLVLEDFSSPINVLSFVFRRVTGNRSAESEDSCPQTPYHGLS
KWTYGNLMFMGVLIVLIQFLFIFLATNQSKAHKLRLEAVPVFEFEDRGCE
YLSQPGVSTCDYVPLTEKPGFDSRATIQICSTNTVNVSNPSFVSDSFFFL
GFKVLNIGRVEVIVGNRNMTNTWIQSTEIGVYVRESKKFYVGMQDVKHET
LLSALLNRLERTNLTVLTSATSHLEVWSETSETVGDRLQRRDQSNMDFRT
RNLNKTSVSVLVDASNVELRETPLGPYILTEEEDVDQQEYVMQISQTDKS
EGDGDELHARD*

spliced messenger RNA

>Gcaud1008.t1 ID=Gcaud1008.t1|Name=Gcaud1008.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=936bp|location=Sequence derived from alignment at NODE_4041_length_2648_cov_5.304654:99..1295+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCCCAAATGGTGCAGCGACGTCTCGTTCTCGAAGACTTCTCCAG
CCCCATAAATGTGCTTTCATTTGTCTTCAGAAGAGTCACGGGAAATCGTT
CAGCAGAGTCTGAAGACAGCTGCCCTCAGACTCCTTATCATGGACTTTCA
AAGTGGACGTATGGCAATTTGATGTTCATGGGCGTTTTGATTGTTTTGAT
CCAGTTCTTGTTTATCTTCCTCGCCACGAATCAATCCAAGGCACATAAGC
TTCGACTTGAAGCTGTTCCGGTATTTGAATTTGAAGATCGAGGCTGCGAA
TACCTTTCCCAGCCTGGTGTCAGTACTTGTGATTACGTTCCACTCACGGA
AAAGCCTGGATTCGATTCACGGGCCACCATACAAATATGCTCTACAAACA
CAGTCAATGTCTCAAATCCCTCGTTTGTTTCCGACTCCTTCTTTTTTCTT
GGCTTCAAAGTCTTGAATATTGGTCGTGTTGAAGTCATAGTAGGGAATAG
GAACATGACAAATACCTGGATCCAGAGTACAGAAATTGGAGTTTATGTCA
GGGAGAGTAAGAAATTTTATGTTGGGATGCAAGACGTAAAGCACGAAACG
TTGTTGTCTGCTTTACTAAACCGTTTGGAAAGAACCAATCTAACTGTTTT
GACAAGTGCTACAAGCCATTTGGAAGTGTGGTCTGAAACATCGGAAACCG
TCGGAGACCGTTTGCAACGGCGAGACCAAAGTAACATGGATTTTAGGACA
CGAAATCTCAACAAAACCAGTGTTTCAGTTCTGGTCGATGCAAGCAACGT
AGAATTGCGAGAAACCCCCCTAGGGCCGTACATATTAACTGAAGAGGAAG
ACGTTGATCAACAAGAATATGTTATGCAGATATCACAAACTGACAAGTCG
GAAGGAGATGGAGACGAATTACATGCGAGAGACTAG

protein sequence of Gcaud1008.t1

>Gcaud1008.t1 ID=Gcaud1008.t1|Name=Gcaud1008.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=312bp
MTSQMVQRRLVLEDFSSPINVLSFVFRRVTGNRSAESEDSCPQTPYHGLS
KWTYGNLMFMGVLIVLIQFLFIFLATNQSKAHKLRLEAVPVFEFEDRGCE
YLSQPGVSTCDYVPLTEKPGFDSRATIQICSTNTVNVSNPSFVSDSFFFL
GFKVLNIGRVEVIVGNRNMTNTWIQSTEIGVYVRESKKFYVGMQDVKHET
LLSALLNRLERTNLTVLTSATSHLEVWSETSETVGDRLQRRDQSNMDFRT
RNLNKTSVSVLVDASNVELRETPLGPYILTEEEDVDQQEYVMQISQTDKS
EGDGDELHARD*

mRNA from alignment at NODE_4041_length_2648_cov_5.304654:99..1295+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1008.t1 ID=Gcaud1008.t1|Name=Gcaud1008.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at NODE_4041_length_2648_cov_5.304654:99..1295+ (Gracilaria caudata M_176_S67 male)
ATGACCTCCCAAATGGTGCAGCGACGTCTCGTTCTCGAAGACTTCTCCAG
CCCCATAAATGTGCTTTCATTTGTCTTCAGAAGAGTCACGGGAAATCGTT
CAGCAGAGTCTGAAGACAGCTGCCCTCAGACTCCTTATCATGGACTTTCA
AAGTGGACGTATGGCAATTTGATGTTCATGGGCGTTTTGATTGTTTTGAT
CCAGTTCTTGTTTATCTTCCTCGCCACGAATCAATCCAAGGCACATAAGC
TTCGACTTGAAGCTGTTCCGGTATTTGAATTTGAAGATCGAGGCTGCGAA
TACCTTTCCCAGCCTGGTGTCAGTACTTGTGATTACGTTCCACTCACGGA
AAAGCCTGGATTCGATTCACGGGCCACCATACAAATATGCTCTACAAACA
CAGTCAATGTCTCAAATCCCTCGTTTGTTTCCGACTCCTTCTTTTTTCTT
GGCTTCAAAGTCTTGAATATTGGTCGTGTTGAAGTCATAGTAGGGAATAG
GAACATGACAAATACCTGGATCCAGAGTACAGAAATTGGAGTTTATGTCA
GGGAGAGTAAGAAATTTTATGTTGGGATGCAAGACGTAAAGCACGAAACG
TTGTTGTCTGCTTTACTAAACCGTTTGGAAAGAACCAATCTAACTGTTTT
GACAAGTGCTACAAGCCATTTGGAAGTGTGGTCTGAAACATCGGAAACCG
TCGGAGACCGTTTGCAACGGCGAGACCAAAGTAACATGGATTTTAGGACA
CGAAATCTCAACAAAACCAGTGTTTCAGTTCTGGTCGATGCAAGCAACGT
AGAATTGCGAGAAACCCCCCTAGGGCCGTACATATTAACTGAAGAGGAAG
ACGTTGATCAACAAGAATATGTTATGCGTATGTATATGTTCGGTGTACTT
AATTCCATTATGTTTCCTACAGGGAAGTCCCGCGGAGTTTTTTCGCTCTC
AGACAAAGATATCTTTCTAGATGAGGATACAACCCCATTAGTGtactaca
ataggccatggattggcgtggttcgcagcttcatcatttgttgcacttcg
ttgcttacatggatttttctcgctgtgttgggcatcgaaggcgatattga
ctctcgattggcatggaaaaaattcttCAACTGCACAGAGATATCACAAA
CTGACAAGTCGGAAGGAGATGGAGACGAATTACATGCGAGAGACTAG

Coding sequence (CDS) from alignment at NODE_4041_length_2648_cov_5.304654:99..1295+

>Gcaud1008.t1 ID=Gcaud1008.t1|Name=Gcaud1008.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=936bp|location=Sequence derived from alignment at NODE_4041_length_2648_cov_5.304654:99..1295+ (Gracilaria caudata M_176_S67 male)
ATGACCTCCCAAATGGTGCAGCGACGTCTCGTTCTCGAAGACTTCTCCAG
CCCCATAAATGTGCTTTCATTTGTCTTCAGAAGAGTCACGGGAAATCGTT
CAGCAGAGTCTGAAGACAGCTGCCCTCAGACTCCTTATCATGGACTTTCA
AAGTGGACGTATGGCAATTTGATGTTCATGGGCGTTTTGATTGTTTTGAT
CCAGTTCTTGTTTATCTTCCTCGCCACGAATCAATCCAAGGCACATAAGC
TTCGACTTGAAGCTGTTCCGGTATTTGAATTTGAAGATCGAGGCTGCGAA
TACCTTTCCCAGCCTGGTGTCAGTACTTGTGATTACGTTCCACTCACGGA
AAAGCCTGGATTCGATTCACGGGCCACCATACAAATATGCTCTACAAACA
CAGTCAATGTCTCAAATCCCTCGTTTGTTTCCGACTCCTTCTTTTTTCTT
GGCTTCAAAGTCTTGAATATTGGTCGTGTTGAAGTCATAGTAGGGAATAG
GAACATGACAAATACCTGGATCCAGAGTACAGAAATTGGAGTTTATGTCA
GGGAGAGTAAGAAATTTTATGTTGGGATGCAAGACGTAAAGCACGAAACG
TTGTTGTCTGCTTTACTAAACCGTTTGGAAAGAACCAATCTAACTGTTTT
GACAAGTGCTACAAGCCATTTGGAAGTGTGGTCTGAAACATCGGAAACCG
TCGGAGACCGTTTGCAACGGCGAGACCAAAGTAACATGGATTTTAGGACA
CGAAATCTCAACAAAACCAGTGTTTCAGTTCTGGTCGATGCAAGCAACGT
AGAATTGCGAGAAACCCCCCTAGGGCCGTACATATTAACTGAAGAGGAAG
ACGTTGATCAACAAGAATATGTTATGCAGATATCACAAACTGACAAGTCG
GAAGGAGATGGAGACGAATTACATGCGAGAGACTAG