Gcaud1004.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1004.t1
Unique Name	Gcaud1004.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	178

Homology

[Close]

BLAST of Gcaud1004.t1 vs. uniprot
Match: A0A2Z2JIF8_9FLOR (CpeB n=8 Tax=Gracilariaceae TaxID=31469 RepID=A0A2Z2JIF8_9FLOR)

HSP 1 Score: 328 bits (841), Expect = 2.360e-113
Identity = 167/177 (94.35%), Postives = 173/177 (97.74%), Query Frame = 0

Query:    1 MLDAFSRVVMNSDAKAAYVGGSDLQALKTFISEGNKRLDAVNSIVGNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTAPNRKIDVTSGDCSALSSEVSSYCDRVCSAIT 177
            MLD FS+VV+N+DAKAAYVGGSDLQALK FISEGNKRLDAVNSIVGNASCIVSDAVSGMICEN GLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTA NRK+DVTSGDCSALSSEV+SYCDRVCSAI+
Sbjct:    1 MLDGFSKVVINADAKAAYVGGSDLQALKNFISEGNKRLDAVNSIVGNASCIVSDAVSGMICENAGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTASNRKVDVTSGDCSALSSEVASYCDRVCSAIS 177

[Close]

BLAST of Gcaud1004.t1 vs. uniprot
Match: H1ADY6_9FLOR (Phycoerythrin beta subunit n=43 Tax=Rhodymeniophycidae TaxID=2045261 RepID=H1ADY6_9FLOR)

HSP 1 Score: 321 bits (823), Expect = 1.310e-110
Identity = 161/177 (90.96%), Postives = 172/177 (97.18%), Query Frame = 0

Query:    1 MLDAFSRVVMNSDAKAAYVGGSDLQALKTFISEGNKRLDAVNSIVGNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTAPNRKIDVTSGDCSALSSEVSSYCDRVCSAIT 177
            MLDAFSRVV+NSDAKAAYVGGSDLQALKTFI+EGNKRLDAVNSIV NASCIV+DAVSGMICENPGLI+PGGNCYTNRRMAACLRDGEIILRY+SYALLAGD SVLEDRCLNGLKETYIALGVPTNSSVRAV+IMK+AAVAFISNTA  RK+D TSGDCSALSSE++SYCDRVCSAI+
Sbjct:    1 MLDAFSRVVVNSDAKAAYVGGSDLQALKTFIAEGNKRLDAVNSIVSNASCIVTDAVSGMICENPGLISPGGNCYTNRRMAACLRDGEIILRYVSYALLAGDPSVLEDRCLNGLKETYIALGVPTNSSVRAVSIMKAAAVAFISNTASQRKMDTTSGDCSALSSEIASYCDRVCSAIS 177

[Close]

BLAST of Gcaud1004.t1 vs. uniprot
Match: A0A1C9C852_9FLOR (R-phycoerythrin class I beta subunit n=1 Tax=Riquetophycus sp. TaxID=1897556 RepID=A0A1C9C852_9FLOR)

HSP 1 Score: 317 bits (811), Expect = 8.850e-109
Identity = 156/177 (88.14%), Postives = 174/177 (98.31%), Query Frame = 0

Query:    1 MLDAFSRVVMNSDAKAAYVGGSDLQALKTFISEGNKRLDAVNSIVGNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTAPNRKIDVTSGDCSALSSEVSSYCDRVCSAIT 177
            MLDAFSRVV+NSDAKAAYVGGSDLQALKTFIS+GNKRLDAVN+IV NASCIVSD+VSGMICENPGLI+PGGNCYTNRRMAACLRDGEIILRY+SYALLAGDASVLEDRCLNGLKETYIALGVPTNSS+RAV+IMKSAAVAF+SNTAP RK+DVT+GDC++LS+EV+SYCDRV ++I+
Sbjct:    1 MLDAFSRVVVNSDAKAAYVGGSDLQALKTFISDGNKRLDAVNAIVSNASCIVSDSVSGMICENPGLISPGGNCYTNRRMAACLRDGEIILRYVSYALLAGDASVLEDRCLNGLKETYIALGVPTNSSIRAVSIMKSAAVAFVSNTAPQRKMDVTAGDCASLSAEVASYCDRVTASIS 177

[Close]

BLAST of Gcaud1004.t1 vs. uniprot
Match: A0A345U896_9FLOR (Phycoerythrin subunit b n=2 Tax=Gracilariaceae TaxID=31469 RepID=A0A345U896_9FLOR)

HSP 1 Score: 314 bits (804), Expect = 1.030e-107
Identity = 157/176 (89.20%), Postives = 167/176 (94.89%), Query Frame = 0

Query:    1 MLDAFSRVVMNSDAKAAYVGGSDLQALKTFISEGNKRLDAVNSIVGNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTAPNRKIDVTSGDCSALSSEVSSYCDRVCSAI 176
            MLDAFSRVV+NSDAKAAYVGGSDL+ALK FISEGNKRLDAVNSIV NASCIVSDAVSGMICENPGLI PGGNCYTNRRMAACLRDGEIILRYISYALLAGD SVLEDRCLNGLKETYIALGVPTNSS+RAVTIMK+AA+AFISNTAP RK+++ SGDCSAL +EV +YCDRV SAI
Sbjct:    1 MLDAFSRVVINSDAKAAYVGGSDLKALKNFISEGNKRLDAVNSIVSNASCIVSDAVSGMICENPGLITPGGNCYTNRRMAACLRDGEIILRYISYALLAGDESVLEDRCLNGLKETYIALGVPTNSSIRAVTIMKAAAIAFISNTAPQRKVEIASGDCSALCTEVGAYCDRVVSAI 176

[Close]

BLAST of Gcaud1004.t1 vs. uniprot
Match: A0A6F8UN66_9FLOR (B-phycoerythrin beta chain n=6 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A6F8UN66_9FLOR)

HSP 1 Score: 311 bits (797), Expect = 1.210e-106
Identity = 156/177 (88.14%), Postives = 170/177 (96.05%), Query Frame = 0

Query:    1 MLDAFSRVVMNSDAKAAYVGGSDLQALKTFISEGNKRLDAVNSIVGNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTAPNRKIDVTSGDCSALSSEVSSYCDRVCSAIT 177
            MLDAFSRVV+NSDAKAAYV GSDLQALKTFI++GNKRLDAVNSIV NASCIV+DAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGD SVLEDRCLNGLKETYIALGVPTNSSVR+V+IMK+AAVAF++NTA  RK+D TSGDCSALSSEV++YCDRV +AI+
Sbjct:    1 MLDAFSRVVVNSDAKAAYVSGSDLQALKTFIADGNKRLDAVNSIVSNASCIVADAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDGSVLEDRCLNGLKETYIALGVPTNSSVRSVSIMKAAAVAFVTNTASQRKMDTTSGDCSALSSEVATYCDRVSAAIS 177

[Close]

BLAST of Gcaud1004.t1 vs. uniprot
Match: M5DDI2_CHOCR (R-phycoerythrin class I beta subunit n=9 Tax=Rhodymeniophycidae TaxID=2045261 RepID=M5DDI2_CHOCR)

HSP 1 Score: 309 bits (791), Expect = 9.900e-106
Identity = 155/177 (87.57%), Postives = 169/177 (95.48%), Query Frame = 0

Query:    1 MLDAFSRVVMNSDAKAAYVGGSDLQALKTFISEGNKRLDAVNSIVGNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTAPNRKIDVTSGDCSALSSEVSSYCDRVCSAIT 177
            MLDAFSRVV+NSDAKAAYVGGSDLQALKTFI++GNKRLDAVNSIV NASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVP NSS+R+V IMK+AAVAF++NTA  RK+  TSGDCSALS+EV+SYCDRV +A++
Sbjct:    1 MLDAFSRVVVNSDAKAAYVGGSDLQALKTFIADGNKRLDAVNSIVSNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVPNNSSIRSVVIMKAAAVAFVNNTASQRKMATTSGDCSALSAEVASYCDRVGAALS 177

[Close]

BLAST of Gcaud1004.t1 vs. uniprot
Match: A0A1B0TIE5_9FLOR (Phycoerythrin beta subunit n=3 Tax=Ceramiaceae TaxID=31377 RepID=A0A1B0TIE5_9FLOR)

HSP 1 Score: 305 bits (781), Expect = 3.310e-104
Identity = 152/177 (85.88%), Postives = 167/177 (94.35%), Query Frame = 0

Query:    1 MLDAFSRVVMNSDAKAAYVGGSDLQALKTFISEGNKRLDAVNSIVGNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTAPNRKIDVTSGDCSALSSEVSSYCDRVCSAIT 177
            MLDAFSRVV+NSDAKAAYV GSDLQALKTFISEGNKRLD+VN IV NASCIVSDAVSGMICENPGLI PGGNCYTNRRMAACLRDGEIILRY+SYALL+GDASVLEDRCLNGLKETYIALGVPTNS+VRAV+IMK+AAVAF++NTA  R ++V +GDCSALSSEV +YCDRV +AI+
Sbjct:    1 MLDAFSRVVVNSDAKAAYVSGSDLQALKTFISEGNKRLDSVNYIVSNASCIVSDAVSGMICENPGLITPGGNCYTNRRMAACLRDGEIILRYVSYALLSGDASVLEDRCLNGLKETYIALGVPTNSTVRAVSIMKAAAVAFVTNTASQRTVEVAAGDCSALSSEVGAYCDRVAAAIS 177

[Close]

BLAST of Gcaud1004.t1 vs. uniprot
Match: Q8MCB1_9FLOR (Phycoerythrin beta subunit n=2 Tax=Ceramiaceae TaxID=31377 RepID=Q8MCB1_9FLOR)

HSP 1 Score: 304 bits (779), Expect = 6.680e-104
Identity = 150/177 (84.75%), Postives = 168/177 (94.92%), Query Frame = 0

Query:    1 MLDAFSRVVMNSDAKAAYVGGSDLQALKTFISEGNKRLDAVNSIVGNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTAPNRKIDVTSGDCSALSSEVSSYCDRVCSAIT 177
            MLDAFSRVV+NSDAKAAYV GSDLQALKTFISEGNKRLD+VN IV NASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRY+SYALL+GDASVLEDRCLNGLKETYIALGVPTNS+VRAV+IMK+AAVAF++NTA  R ++V +GDCSA++SEV +YCDRV +A++
Sbjct:    1 MLDAFSRVVVNSDAKAAYVSGSDLQALKTFISEGNKRLDSVNYIVSNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYVSYALLSGDASVLEDRCLNGLKETYIALGVPTNSTVRAVSIMKAAAVAFVTNTASQRTVEVAAGDCSAIASEVGAYCDRVAAAVS 177

[Close]

BLAST of Gcaud1004.t1 vs. uniprot
Match: A0A4D6WX69_9FLOR (Gerythrin subunit b n=1 Tax=Pterothamnion crispum TaxID=1550583 RepID=A0A4D6WX69_9FLOR)

HSP 1 Score: 304 bits (778), Expect = 9.490e-104
Identity = 151/177 (85.31%), Postives = 167/177 (94.35%), Query Frame = 0

Query:    1 MLDAFSRVVMNSDAKAAYVGGSDLQALKTFISEGNKRLDAVNSIVGNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTAPNRKIDVTSGDCSALSSEVSSYCDRVCSAIT 177
            MLDAFSRVV+NSDAKAAY+ GSDLQ+LK FI EGNKRLD+VN IV NASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRY+SYALL+GDASVLEDRCLNGLKETYIALGVP NS+VRAVTIMK+AAVAF++NTA  RK+D +SGDCSAL+SEV+SYCDRV SA++
Sbjct:    1 MLDAFSRVVVNSDAKAAYISGSDLQSLKAFIQEGNKRLDSVNFIVSNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYVSYALLSGDASVLEDRCLNGLKETYIALGVPGNSTVRAVTIMKAAAVAFVTNTASQRKMDCSSGDCSALASEVASYCDRVTSAVS 177

[Close]

BLAST of Gcaud1004.t1 vs. uniprot
Match: PHEB_POLHB (R-phycoerythrin beta chain n=43 Tax=Ceramiales TaxID=2802 RepID=PHEB_POLHB)

HSP 1 Score: 303 bits (777), Expect = 1.350e-103
Identity = 150/177 (84.75%), Postives = 167/177 (94.35%), Query Frame = 0

Query:    1 MLDAFSRVVMNSDAKAAYVGGSDLQALKTFISEGNKRLDAVNSIVGNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAGDASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTAPNRKIDVTSGDCSALSSEVSSYCDRVCSAIT 177
            MLDAFSRVV+NSD+KAAYV GSDLQALKTFI++GNKRLDAVN IV N+SCIVSDA+SGMICENPGLI PGGNCYTNRRMAACLRDGEIILRY+SYALLAGDASVLEDRCLNGLKETYIALGVPTNS+VRAV+IMK+AAV FISNTA  RK++V  GDCSAL+SEV+SYCDRV +A++
Sbjct:    1 MLDAFSRVVVNSDSKAAYVSGSDLQALKTFINDGNKRLDAVNYIVSNSSCIVSDAISGMICENPGLITPGGNCYTNRRMAACLRDGEIILRYVSYALLAGDASVLEDRCLNGLKETYIALGVPTNSTVRAVSIMKAAAVCFISNTASQRKVEVIEGDCSALASEVASYCDRVVAAVS 177

The following BLAST results are available for this feature:

BLAST of Gcaud1004.t1 vs. uniprot

BLAST of Gcaud1004.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2Z2JIF8_9FLOR	2.360e-113	94.35	CpeB n=8 Tax=Gracilariaceae TaxID=31469 RepID=A0A2...	[more]
H1ADY6_9FLOR	1.310e-110	90.96	Phycoerythrin beta subunit n=43 Tax=Rhodymeniophyc...	[more]
A0A1C9C852_9FLOR	8.850e-109	88.14	R-phycoerythrin class I beta subunit n=1 Tax=Rique...	[more]
A0A345U896_9FLOR	1.030e-107	89.20	Phycoerythrin subunit b n=2 Tax=Gracilariaceae Tax...	[more]
A0A6F8UN66_9FLOR	1.210e-106	88.14	B-phycoerythrin beta chain n=6 Tax=Rhodymeniophyci...	[more]
M5DDI2_CHOCR	9.900e-106	87.57	R-phycoerythrin class I beta subunit n=9 Tax=Rhody...	[more]
A0A1B0TIE5_9FLOR	3.310e-104	85.88	Phycoerythrin beta subunit n=3 Tax=Ceramiaceae Tax...	[more]
Q8MCB1_9FLOR	6.680e-104	84.75	Phycoerythrin beta subunit n=2 Tax=Ceramiaceae Tax...	[more]
A0A4D6WX69_9FLOR	9.490e-104	85.31	Gerythrin subunit b n=1 Tax=Pterothamnion crispum ...	[more]
PHEB_POLHB	1.350e-103	84.75	R-phycoerythrin beta chain n=43 Tax=Ceramiales Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012128	Phycobilisome, alpha/beta subunit	PFAM	PF00502	Phycobilisome	coord: 7..176 e-value: 3.1E-59 score: 199.4
IPR012128	Phycobilisome, alpha/beta subunit	PIRSF	PIRSF000081	Phycocyanin	coord: 1..177 e-value: 1.2E-64 score: 215.2
IPR038719	Phycobilisome, alpha/beta subunit superfamily	GENE3D	1.10.490.20	Phycocyanins	coord: 1..177 e-value: 2.6E-76 score: 257.2
None	No IPR available	PANTHER	PTHR34011:SF7	C-PHYCOCYANIN BETA CHAIN	coord: 1..176
None	No IPR available	PANTHER	PTHR34011	PHYCOBILISOME 32.1 KDA LINKER POLYPEPTIDE, PHYCOCYANIN-ASSOCIATED, ROD 2-RELATED	coord: 1..176
None	No IPR available	CDD	cd14767	PE_beta-like	coord: 1..176 e-value: 1.01016E-108 score: 306.049
IPR009050	Globin-like superfamily	SUPERFAMILY	46458	Globin-like	coord: 1..176

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4604_length_2135_cov_139.932485	contig	NODE_4604_length_2135_cov_139.932485:718..1251 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1004.t1	Gcaud1004.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_4604_length_2135_cov_139.932485 718..1251 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1004.t1 ID=Gcaud1004.t1|Name=Gcaud1004.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=178bp
MLDAFSRVVMNSDAKAAYVGGSDLQALKTFISEGNKRLDAVNSIVGNASC
IVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAG
DASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTAPNRK
IDVTSGDCSALSSEVSSYCDRVCSAIT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012128	Phycobilisome_asu/bsu
IPR038719	Phycobilisome_asu/bsu_sf
IPR009050	Globin-like_sf