Gcaud1004.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1004.t1
Unique NameGcaud1004.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4604_length_2135_cov_139.932485contigNODE_4604_length_2135_cov_139.932485:718..1251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.AAC35631
Preferred namecpcB
PFAMsPhycobilisome
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue1.62e-95
EggNOG OGs28I0N@1|root,2SQCB@2759|Eukaryota
Descriptionprotein-chromophore linkage
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1004Gcaud1004Gracilaria caudata M_176_S67 malegeneNODE_4604_length_2135_cov_139.932485 718..1251 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1004.t1.start1Gcaud1004.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4604_length_2135_cov_139.932485 718..720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1004.t1.CDS1Gcaud1004.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4604_length_2135_cov_139.932485 718..1251 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1004.t1.exon1Gcaud1004.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4604_length_2135_cov_139.932485 718..1251 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1004.t1.stop1Gcaud1004.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4604_length_2135_cov_139.932485 1249..1251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1004.t1Gcaud1004.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4604_length_2135_cov_139.932485 718..1251 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1004.t1 ID=Gcaud1004.t1|Name=Gcaud1004.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=178bp
MLDAFSRVVMNSDAKAAYVGGSDLQALKTFISEGNKRLDAVNSIVGNASC
IVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAG
DASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTAPNRK
IDVTSGDCSALSSEVSSYCDRVCSAIT*
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spliced messenger RNA

>Gcaud1004.t1 ID=Gcaud1004.t1|Name=Gcaud1004.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp|location=Sequence derived from alignment at NODE_4604_length_2135_cov_139.932485:718..1251+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGATGCATTTTCTAGAGTTGTAATGAATTCAGACGCTAAAGCTGC
TTACGTTGGTGGTAGTGATTTACAAGCTCTTAAAACTTTTATTTCAGAAG
GTAACAAACGATTAGATGCTGTTAACTCAATTGTTGGTAACGCTAGCTGT
ATCGTTTCAGATGCTGTATCAGGAATGATTTGTGAAAACCCAGGACTTAT
AGCTCCTGGCGGCAACTGCTATACTAATCGTAGAATGGCAGCTTGCTTAC
GCGACGGTGAAATCATCCTAAGATATATCTCTTACGCTCTTCTTGCAGGC
GATGCTTCTGTCTTAGAAGATCGCTGCTTAAATGGCTTAAAAGAAACTTA
TATTGCTCTTGGAGTACCTACTAATTCTTCTGTAAGAGCTGTAACTATAA
TGAAATCAGCAGCTGTTGCATTCATTTCTAACACAGCACCTAACAGAAAA
ATCGATGTAACTAGTGGAGATTGTTCTGCGCTATCTTCAGAAGTTTCTAG
CTATTGTGATAGAGTATGTTCTGCTATTACCTAA
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protein sequence of Gcaud1004.t1

>Gcaud1004.t1 ID=Gcaud1004.t1|Name=Gcaud1004.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=178bp
MLDAFSRVVMNSDAKAAYVGGSDLQALKTFISEGNKRLDAVNSIVGNASC
IVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYISYALLAG
DASVLEDRCLNGLKETYIALGVPTNSSVRAVTIMKSAAVAFISNTAPNRK
IDVTSGDCSALSSEVSSYCDRVCSAIT*
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mRNA from alignment at NODE_4604_length_2135_cov_139.932485:718..1251+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1004.t1 ID=Gcaud1004.t1|Name=Gcaud1004.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=534bp|location=Sequence derived from alignment at NODE_4604_length_2135_cov_139.932485:718..1251+ (Gracilaria caudata M_176_S67 male)
ATGCTTGATGCATTTTCTAGAGTTGTAATGAATTCAGACGCTAAAGCTGC
TTACGTTGGTGGTAGTGATTTACAAGCTCTTAAAACTTTTATTTCAGAAG
GTAACAAACGATTAGATGCTGTTAACTCAATTGTTGGTAACGCTAGCTGT
ATCGTTTCAGATGCTGTATCAGGAATGATTTGTGAAAACCCAGGACTTAT
AGCTCCTGGCGGCAACTGCTATACTAATCGTAGAATGGCAGCTTGCTTAC
GCGACGGTGAAATCATCCTAAGATATATCTCTTACGCTCTTCTTGCAGGC
GATGCTTCTGTCTTAGAAGATCGCTGCTTAAATGGCTTAAAAGAAACTTA
TATTGCTCTTGGAGTACCTACTAATTCTTCTGTAAGAGCTGTAACTATAA
TGAAATCAGCAGCTGTTGCATTCATTTCTAACACAGCACCTAACAGAAAA
ATCGATGTAACTAGTGGAGATTGTTCTGCGCTATCTTCAGAAGTTTCTAG
CTATTGTGATAGAGTATGTTCTGCTATTACCTAA
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Coding sequence (CDS) from alignment at NODE_4604_length_2135_cov_139.932485:718..1251+

>Gcaud1004.t1 ID=Gcaud1004.t1|Name=Gcaud1004.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=534bp|location=Sequence derived from alignment at NODE_4604_length_2135_cov_139.932485:718..1251+ (Gracilaria caudata M_176_S67 male)
ATGCTTGATGCATTTTCTAGAGTTGTAATGAATTCAGACGCTAAAGCTGC
TTACGTTGGTGGTAGTGATTTACAAGCTCTTAAAACTTTTATTTCAGAAG
GTAACAAACGATTAGATGCTGTTAACTCAATTGTTGGTAACGCTAGCTGT
ATCGTTTCAGATGCTGTATCAGGAATGATTTGTGAAAACCCAGGACTTAT
AGCTCCTGGCGGCAACTGCTATACTAATCGTAGAATGGCAGCTTGCTTAC
GCGACGGTGAAATCATCCTAAGATATATCTCTTACGCTCTTCTTGCAGGC
GATGCTTCTGTCTTAGAAGATCGCTGCTTAAATGGCTTAAAAGAAACTTA
TATTGCTCTTGGAGTACCTACTAATTCTTCTGTAAGAGCTGTAACTATAA
TGAAATCAGCAGCTGTTGCATTCATTTCTAACACAGCACCTAACAGAAAA
ATCGATGTAACTAGTGGAGATTGTTCTGCGCTATCTTCAGAAGTTTCTAG
CTATTGTGATAGAGTATGTTCTGCTATTACCTAA
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