Gcaud9977.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9977.t1
Unique Name	Gcaud9977.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	401

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_473_length_24485_cov_4.886325	contig	NODE_473_length_24485_cov_4.886325:5952..7154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	386415.NT01CX_2377
PFAMs	CAP,CW_binding_1,SLH
Max annot lvl	2\|Bacteria
Evalue	0.000124
EggNOG OGs	COG2340@1\|root,COG2340@2\|Bacteria
Description	peptidase inhibitor activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9977	Gcaud9977	Gracilaria caudata M_176_S67 male	gene	NODE_473_length_24485_cov_4.886325 5952..7154 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9977.t1.start1	Gcaud9977.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_473_length_24485_cov_4.886325 5952..5954 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9977.t1.CDS1	Gcaud9977.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_473_length_24485_cov_4.886325 5952..7154 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9977.t1.exon1	Gcaud9977.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_473_length_24485_cov_4.886325 5952..7154 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9977.t1.stop1	Gcaud9977.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_473_length_24485_cov_4.886325 7152..7154 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9977.t1	Gcaud9977.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_473_length_24485_cov_4.886325 5952..7154 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_473_length_24485_cov_4.886325:5952..7154+
coding sequence from alignment at NODE_473_length_24485_cov_4.886325:5952..7154+

mRNA sequence

>Gcaud9977.t1 ID=Gcaud9977.t1|Name=Gcaud9977.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=401bp
MLKPGPKAQLQNAKRYAVTLASIGSLRHQDLVAATNEIGCERRIGAENIA
YNYDKGDIAFSCVQQWENSPAHLGNILKDDFDEVVVGFYKAPNGRVYCVQ
TFAVTSRTFSKHGGHMAQCESVSVQEKPTQEVLNVQNDENIEEKAINEKK
HAEPGDPIMSEEEVLESQEHPALQQEDGQSSDSDTETAYSTVKDFEAGES
EADGNTESFAAVSNENQAKITINISADEGHYLNEYVQEARSELNDHAESI
GMEEFTEGDESKQREVEEHEASETAIATEDHDSLEVDDQDPQDHENEKED
IVDRPMANEMKKSKRKRETKKTNVGNRACRCLELGERCWHSLGKQTDELC
TPFLATKKQPTACKLKCCSHCLTKSKSRRCTNKVVKRLCRKMRKIIENEL
*

spliced messenger RNA

>Gcaud9977.t1 ID=Gcaud9977.t1|Name=Gcaud9977.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_473_length_24485_cov_4.886325:5952..7154+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAAAGCCTGGACCAAAGGCACAACTGCAGAACGCAAAGCGCTATGC
AGTGACTTTGGCAAGCATTGGAAGCCTCAGACATCAAGATTTGGTAGCTG
CAACCAATGAGATTGGCTGCGAACGCAGAATTGGTGCAGAAAACATTGCC
TACAACTACGACAAAGGCGACATTGCGTTTTCATGTGTTCAGCAATGGGA
AAATTCTCCAGCTCACTTGGGCAACATATTAAAGGACGACTTCGACGAGG
TTGTTGTTGGGTTTTATAAAGCTCCAAATGGACGTGTATACTGTGTTCAG
ACTTTTGCGGTAACCAGTAGGACTTTCTCGAAACATGGTGGGCATATGGC
CCAGTGCGAATCAGTTTCAGTGCAAGAAAAACCAACACAAGAGGTACTGA
ATGTCCAGAACGATGAGAACATCGAAGAGAAAGCTATCAACGAAAAGAAG
CACGCAGAACCTGGGGATCCCATCATGAGTGAAGAAGAAGTGCTTGAAAG
CCAGGAACACCCTGCACTCCAGCAAGAGGATGGGCAGAGTTCTGATTCCG
ACACAGAAACGGCTTATTCCACTGTTAAAGATTTCGAGGCAGGTGAATCA
GAAGCTGACGGTAATACCGAAAGTTTTGCTGCGGTCTCAAACGAAAACCA
AGCCAAAATCACCATAAACATTTCTGCGGATGAAGGTCATTATTTAAATG
AATACGTCCAAGAAGCACGAAGTGAACTGAATGATCATGCTGAATCTATT
GGCATGGAAGAATTTACCGAAGGTGACGAATCAAAGCAGAGAGAAGTGGA
AGAGCATGAGGCGAGCGAAACTGCGATAGCTACAGAAGATCATGATTCTC
TTGAGGTAGATGATCAAGACCCTCAGGATCACGAGAATGAAAAAGAGGAC
ATTGTCGATAGGCCCATGGCGAATGAAATgaagaaaagcaagaggaaaag
ggagacgaagaAAACCAACGTCGGCAACAGAGCCTGCCGTTGTCTAGAGC
TTGGGGAGAGATGTTGGCATTCCCTCGGAAAACAAACAGATGAACTGTGT
ACCCCGTTTCTTGCAACCAAGAAGCAGCCCACGGCGTGCAAGCTGAAATG
TTGCAGTCATTGCCTAACAAAATCTAAATCACGCCGATGTACAAACAAAG
TTGTGAAAAGGCTCTGCAGAAAGATGAGAAAGATAATTGAGAATGAGTTG
TAA

protein sequence of Gcaud9977.t1

>Gcaud9977.t1 ID=Gcaud9977.t1|Name=Gcaud9977.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=401bp
MLKPGPKAQLQNAKRYAVTLASIGSLRHQDLVAATNEIGCERRIGAENIA
YNYDKGDIAFSCVQQWENSPAHLGNILKDDFDEVVVGFYKAPNGRVYCVQ
TFAVTSRTFSKHGGHMAQCESVSVQEKPTQEVLNVQNDENIEEKAINEKK
HAEPGDPIMSEEEVLESQEHPALQQEDGQSSDSDTETAYSTVKDFEAGES
EADGNTESFAAVSNENQAKITINISADEGHYLNEYVQEARSELNDHAESI
GMEEFTEGDESKQREVEEHEASETAIATEDHDSLEVDDQDPQDHENEKED
IVDRPMANEMKKSKRKRETKKTNVGNRACRCLELGERCWHSLGKQTDELC
TPFLATKKQPTACKLKCCSHCLTKSKSRRCTNKVVKRLCRKMRKIIENEL
*

mRNA from alignment at NODE_473_length_24485_cov_4.886325:5952..7154+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9977.t1 ID=Gcaud9977.t1|Name=Gcaud9977.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_473_length_24485_cov_4.886325:5952..7154+ (Gracilaria caudata M_176_S67 male)
ATGTTAAAGCCTGGACCAAAGGCACAACTGCAGAACGCAAAGCGCTATGC
AGTGACTTTGGCAAGCATTGGAAGCCTCAGACATCAAGATTTGGTAGCTG
CAACCAATGAGATTGGCTGCGAACGCAGAATTGGTGCAGAAAACATTGCC
TACAACTACGACAAAGGCGACATTGCGTTTTCATGTGTTCAGCAATGGGA
AAATTCTCCAGCTCACTTGGGCAACATATTAAAGGACGACTTCGACGAGG
TTGTTGTTGGGTTTTATAAAGCTCCAAATGGACGTGTATACTGTGTTCAG
ACTTTTGCGGTAACCAGTAGGACTTTCTCGAAACATGGTGGGCATATGGC
CCAGTGCGAATCAGTTTCAGTGCAAGAAAAACCAACACAAGAGGTACTGA
ATGTCCAGAACGATGAGAACATCGAAGAGAAAGCTATCAACGAAAAGAAG
CACGCAGAACCTGGGGATCCCATCATGAGTGAAGAAGAAGTGCTTGAAAG
CCAGGAACACCCTGCACTCCAGCAAGAGGATGGGCAGAGTTCTGATTCCG
ACACAGAAACGGCTTATTCCACTGTTAAAGATTTCGAGGCAGGTGAATCA
GAAGCTGACGGTAATACCGAAAGTTTTGCTGCGGTCTCAAACGAAAACCA
AGCCAAAATCACCATAAACATTTCTGCGGATGAAGGTCATTATTTAAATG
AATACGTCCAAGAAGCACGAAGTGAACTGAATGATCATGCTGAATCTATT
GGCATGGAAGAATTTACCGAAGGTGACGAATCAAAGCAGAGAGAAGTGGA
AGAGCATGAGGCGAGCGAAACTGCGATAGCTACAGAAGATCATGATTCTC
TTGAGGTAGATGATCAAGACCCTCAGGATCACGAGAATGAAAAAGAGGAC
ATTGTCGATAGGCCCATGGCGAATGAAATgaagaaaagcaagaggaaaag
ggagacgaagaAAACCAACGTCGGCAACAGAGCCTGCCGTTGTCTAGAGC
TTGGGGAGAGATGTTGGCATTCCCTCGGAAAACAAACAGATGAACTGTGT
ACCCCGTTTCTTGCAACCAAGAAGCAGCCCACGGCGTGCAAGCTGAAATG
TTGCAGTCATTGCCTAACAAAATCTAAATCACGCCGATGTACAAACAAAG
TTGTGAAAAGGCTCTGCAGAAAGATGAGAAAGATAATTGAGAATGAGTTG
TAA

Coding sequence (CDS) from alignment at NODE_473_length_24485_cov_4.886325:5952..7154+

>Gcaud9977.t1 ID=Gcaud9977.t1|Name=Gcaud9977.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1203bp|location=Sequence derived from alignment at NODE_473_length_24485_cov_4.886325:5952..7154+ (Gracilaria caudata M_176_S67 male)
ATGTTAAAGCCTGGACCAAAGGCACAACTGCAGAACGCAAAGCGCTATGC
AGTGACTTTGGCAAGCATTGGAAGCCTCAGACATCAAGATTTGGTAGCTG
CAACCAATGAGATTGGCTGCGAACGCAGAATTGGTGCAGAAAACATTGCC
TACAACTACGACAAAGGCGACATTGCGTTTTCATGTGTTCAGCAATGGGA
AAATTCTCCAGCTCACTTGGGCAACATATTAAAGGACGACTTCGACGAGG
TTGTTGTTGGGTTTTATAAAGCTCCAAATGGACGTGTATACTGTGTTCAG
ACTTTTGCGGTAACCAGTAGGACTTTCTCGAAACATGGTGGGCATATGGC
CCAGTGCGAATCAGTTTCAGTGCAAGAAAAACCAACACAAGAGGTACTGA
ATGTCCAGAACGATGAGAACATCGAAGAGAAAGCTATCAACGAAAAGAAG
CACGCAGAACCTGGGGATCCCATCATGAGTGAAGAAGAAGTGCTTGAAAG
CCAGGAACACCCTGCACTCCAGCAAGAGGATGGGCAGAGTTCTGATTCCG
ACACAGAAACGGCTTATTCCACTGTTAAAGATTTCGAGGCAGGTGAATCA
GAAGCTGACGGTAATACCGAAAGTTTTGCTGCGGTCTCAAACGAAAACCA
AGCCAAAATCACCATAAACATTTCTGCGGATGAAGGTCATTATTTAAATG
AATACGTCCAAGAAGCACGAAGTGAACTGAATGATCATGCTGAATCTATT
GGCATGGAAGAATTTACCGAAGGTGACGAATCAAAGCAGAGAGAAGTGGA
AGAGCATGAGGCGAGCGAAACTGCGATAGCTACAGAAGATCATGATTCTC
TTGAGGTAGATGATCAAGACCCTCAGGATCACGAGAATGAAAAAGAGGAC
ATTGTCGATAGGCCCATGGCGAATGAAATgaagaaaagcaagaggaaaag
ggagacgaagaAAACCAACGTCGGCAACAGAGCCTGCCGTTGTCTAGAGC
TTGGGGAGAGATGTTGGCATTCCCTCGGAAAACAAACAGATGAACTGTGT
ACCCCGTTTCTTGCAACCAAGAAGCAGCCCACGGCGTGCAAGCTGAAATG
TTGCAGTCATTGCCTAACAAAATCTAAATCACGCCGATGTACAAACAAAG
TTGTGAAAAGGCTCTGCAGAAAGATGAGAAAGATAATTGAGAATGAGTTG
TAA