Gcaud9881.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9881.t1
Unique Name	Gcaud9881.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	157

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_428_length_25911_cov_4.217002	contig	NODE_428_length_25911_cov_4.217002:2291..2761 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708299.1
PFAMs	UQ_con
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10573
KEGG Pathway	ko04120,map04120
GOs	GO:0000003,GO:0000151,GO:0000209,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009791,GO:0009987,GO:0010228,GO:0010498,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022414,GO:0030163,GO:0031371,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033503,GO:0033523,GO:0033554,GO:0034641,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051276,GO:0051603,GO:0051716,GO:0061458,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Evalue	2.79e-90
EggNOG OGs	COG5078@1\|root,KOG0419@2759\|Eukaryota
EC	2.3.2.23
Description	histone ubiquitination
COG category	O
BRITE	ko00000,ko00001,ko01000,ko03400,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9881	Gcaud9881	Gracilaria caudata M_176_S67 male	gene	NODE_428_length_25911_cov_4.217002 2291..2761 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9881.t1.start1	Gcaud9881.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_428_length_25911_cov_4.217002 2291..2293 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9881.t1.CDS1	Gcaud9881.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_428_length_25911_cov_4.217002 2291..2761 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9881.t1.exon1	Gcaud9881.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_428_length_25911_cov_4.217002 2291..2761 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9881.t1.stop1	Gcaud9881.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_428_length_25911_cov_4.217002 2759..2761 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9881.t1	Gcaud9881.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_428_length_25911_cov_4.217002 2291..2761 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_428_length_25911_cov_4.217002:2291..2761+
coding sequence from alignment at NODE_428_length_25911_cov_4.217002:2291..2761+

mRNA sequence

>Gcaud9881.t1 ID=Gcaud9881.t1|Name=Gcaud9881.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=157bp
MSQSSPSAARLRLMTDLKLMRQEPPEGCSASPLSEENLFVWGATIFGPPE
TPWEGGVYSLRLTFNEHYPEKPPRVRFTAEMFHPNVYTDGTLCLDIIQDK
WSPIYTVNTILTSIQSLLTDPNPSSPANPEAAQLYNADRNAYKKKVRRCA
QKSVEC*

spliced messenger RNA

>Gcaud9881.t1 ID=Gcaud9881.t1|Name=Gcaud9881.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=471bp|location=Sequence derived from alignment at NODE_428_length_25911_cov_4.217002:2291..2761+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAATCATCCCCGTCCGCCGCGAGGCTTCGCCTCATGACCGATCT
CAAACTCATGCGTCAGGAGCCTCCAGAGGGTTGCAGCGCCAGTCCACTTA
GCGAGGAAAACCTCTTCGTCTGGGGTGCCACTATTTTCGGTCCACCAGAA
ACCCCTTGGGAGGGTGGTGTCTACAGTCTACGTCTCACCTTCAATGAACA
CTATCCGGAAAAACCTCCGCGTGTGCGCTTCACTGCCGAGATGTTCCACC
CGAATGTGTACACCGATGGAACTCTTTGTCTGGATATCATTCAGGATAAG
TGGTCGCCCATATACACCGTCAATACTATTCTTACTTCCATCCAGTCCTT
GCTCACGGATCCCAACCCGTCGAGCCCTGCTAACCCAGAGGCTGCTCAGT
TGTACAATGCTGATAGGAATGCTTATAAGAAGAAGGTTCGTCGATGCGCA
CAAAAGAGTGTTGAATGTTAG

protein sequence of Gcaud9881.t1

>Gcaud9881.t1 ID=Gcaud9881.t1|Name=Gcaud9881.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=157bp
MSQSSPSAARLRLMTDLKLMRQEPPEGCSASPLSEENLFVWGATIFGPPE
TPWEGGVYSLRLTFNEHYPEKPPRVRFTAEMFHPNVYTDGTLCLDIIQDK
WSPIYTVNTILTSIQSLLTDPNPSSPANPEAAQLYNADRNAYKKKVRRCA
QKSVEC*

mRNA from alignment at NODE_428_length_25911_cov_4.217002:2291..2761+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9881.t1 ID=Gcaud9881.t1|Name=Gcaud9881.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=471bp|location=Sequence derived from alignment at NODE_428_length_25911_cov_4.217002:2291..2761+ (Gracilaria caudata M_176_S67 male)
ATGTCGCAATCATCCCCGTCCGCCGCGAGGCTTCGCCTCATGACCGATCT
CAAACTCATGCGTCAGGAGCCTCCAGAGGGTTGCAGCGCCAGTCCACTTA
GCGAGGAAAACCTCTTCGTCTGGGGTGCCACTATTTTCGGTCCACCAGAA
ACCCCTTGGGAGGGTGGTGTCTACAGTCTACGTCTCACCTTCAATGAACA
CTATCCGGAAAAACCTCCGCGTGTGCGCTTCACTGCCGAGATGTTCCACC
CGAATGTGTACACCGATGGAACTCTTTGTCTGGATATCATTCAGGATAAG
TGGTCGCCCATATACACCGTCAATACTATTCTTACTTCCATCCAGTCCTT
GCTCACGGATCCCAACCCGTCGAGCCCTGCTAACCCAGAGGCTGCTCAGT
TGTACAATGCTGATAGGAATGCTTATAAGAAGAAGGTTCGTCGATGCGCA
CAAAAGAGTGTTGAATGTTAG

Coding sequence (CDS) from alignment at NODE_428_length_25911_cov_4.217002:2291..2761+

>Gcaud9881.t1 ID=Gcaud9881.t1|Name=Gcaud9881.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=471bp|location=Sequence derived from alignment at NODE_428_length_25911_cov_4.217002:2291..2761+ (Gracilaria caudata M_176_S67 male)
ATGTCGCAATCATCCCCGTCCGCCGCGAGGCTTCGCCTCATGACCGATCT
CAAACTCATGCGTCAGGAGCCTCCAGAGGGTTGCAGCGCCAGTCCACTTA
GCGAGGAAAACCTCTTCGTCTGGGGTGCCACTATTTTCGGTCCACCAGAA
ACCCCTTGGGAGGGTGGTGTCTACAGTCTACGTCTCACCTTCAATGAACA
CTATCCGGAAAAACCTCCGCGTGTGCGCTTCACTGCCGAGATGTTCCACC
CGAATGTGTACACCGATGGAACTCTTTGTCTGGATATCATTCAGGATAAG
TGGTCGCCCATATACACCGTCAATACTATTCTTACTTCCATCCAGTCCTT
GCTCACGGATCCCAACCCGTCGAGCCCTGCTAACCCAGAGGCTGCTCAGT
TGTACAATGCTGATAGGAATGCTTATAAGAAGAAGGTTCGTCGATGCGCA
CAAAAGAGTGTTGAATGTTAG