Gcaud9870.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9870.t1
Unique Name	Gcaud9870.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	112

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_584_length_21412_cov_4.339853	contig	NODE_584_length_21412_cov_4.339853:17674..18136 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5059.CADAFLAP00005906
Preferred name	RPL30
PFAMs	Ribosomal_L7Ae
Max annot lvl	4751\|Fungi
KEGG ko	ko:K02908
KEGG Pathway	ko03010,map03010
KEGG Module	M00177,M00179
GOs	GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015934,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030627,GO:0031323,GO:0031324,GO:0032991,GO:0033119,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0036002,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043484,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048519,GO:0048523,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903311,GO:1903312,GO:1990904
Evalue	8.76e-47
EggNOG OGs	COG1911@1\|root,KOG2988@2759\|Eukaryota,3A3EW@33154\|Opisthokonta,3P3X3@4751\|Fungi,3QWQH@4890\|Ascomycota,20I2K@147545\|Eurotiomycetes,3S99R@5042\|Eurotiales
Description	60S ribosomal protein
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9870	Gcaud9870	Gracilaria caudata M_176_S67 male	gene	NODE_584_length_21412_cov_4.339853 17674..18136 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9870.t1	Gcaud9870.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_584_length_21412_cov_4.339853 17674..18136 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9870.t1.stop1	Gcaud9870.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_584_length_21412_cov_4.339853 17674..17676 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9870.t1.CDS1	Gcaud9870.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_584_length_21412_cov_4.339853 17674..17771 -
Gcaud9870.t1.CDS2	Gcaud9870.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_584_length_21412_cov_4.339853 17899..18136 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9870.t1.exon1	Gcaud9870.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_584_length_21412_cov_4.339853 17674..17771 -
Gcaud9870.t1.exon2	Gcaud9870.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_584_length_21412_cov_4.339853 17899..18136 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9870.t1.intron1	Gcaud9870.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_584_length_21412_cov_4.339853 17772..17898 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9870.t1.start1	Gcaud9870.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_584_length_21412_cov_4.339853 18134..18136 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_584_length_21412_cov_4.339853:17674..18136-
coding sequence from alignment at NODE_584_length_21412_cov_4.339853:17674..18136-

mRNA sequence

>Gcaud9870.t1 ID=Gcaud9870.t1|Name=Gcaud9870.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=112bp
MAKGKKKNTENVNQRLALVVKSGKYTLGYKSTIRTLRTGKAKLILIASNA
SPLKKSELEYYAMLAKCQVHHFQGNNIDLGTACGRYFRTSAMAITDPGDS
EIDNVFLNSES*

spliced messenger RNA

>Gcaud9870.t1 ID=Gcaud9870.t1|Name=Gcaud9870.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=336bp|location=Sequence derived from alignment at NODE_584_length_21412_cov_4.339853:17674..18136- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAAGGGAAAGAAGAAGAATACGGAGAATGTCAACCAAAGACTGGC
TCTCGTCGTCAAGTCCGGCAAGTACACTCTTGGGTACAAATCGACCATTC
GAACTTTGAGAACGGGCAAGGCAAAGCTCATCCTCATCGCTTCCAACGCT
TCACCGTTGAAGAAGTCTGAGCTGGAGTACTACGCAATGCTCGCGAAGTG
TCAGGTTCACCATTTCCAAGGGAATAACATCGATCTAGGAACCGCTTGTG
GCCGATACTTCCGCACTAGCGCTATGGCTATCACAGACCCTGGAGACAGC
GAAATTGACAACGTCTTCCTTAACTCAGAAAGTTAA

protein sequence of Gcaud9870.t1

>Gcaud9870.t1 ID=Gcaud9870.t1|Name=Gcaud9870.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=112bp
MAKGKKKNTENVNQRLALVVKSGKYTLGYKSTIRTLRTGKAKLILIASNA
SPLKKSELEYYAMLAKCQVHHFQGNNIDLGTACGRYFRTSAMAITDPGDS
EIDNVFLNSES*

mRNA from alignment at NODE_584_length_21412_cov_4.339853:17674..18136-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9870.t1 ID=Gcaud9870.t1|Name=Gcaud9870.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=463bp|location=Sequence derived from alignment at NODE_584_length_21412_cov_4.339853:17674..18136- (Gracilaria caudata M_176_S67 male)
ATGGCAAAGGGAAAGAAGAAGAATACGGAGAATGTCAACCAAAGACTGGC
TCTCGTCGTCAAGTCCGGCAAGTACACTCTTGGGTACAAATCGACCATTC
GAACTTTGAGAACGGGCAAGGCAAAGCTCATCCTCATCGCTTCCAACGCT
TCACCGTTGAAGAAGTCTGAGCTGGAGTACTACGCAATGCTCGCGAAGTG
TCAGGTTCACCATTTCCAAGGGAATAACATCGATCTAGGTAGGTTTAAAA
TCACGCGCGATACAACAATAACATCGAGCGCGAATTGTGCGCACAAATAT
CAGCGAAGTCGGACAACCGCAAGATGCTAACTGATTTGATTCAATCTTTG
CTTTGCGAACATTAGGAACCGCTTGTGGCCGATACTTCCGCACTAGCGCT
ATGGCTATCACAGACCCTGGAGACAGCGAAATTGACAACGTCTTCCTTAA
CTCAGAAAGTTAA

Coding sequence (CDS) from alignment at NODE_584_length_21412_cov_4.339853:17674..18136-

>Gcaud9870.t1 ID=Gcaud9870.t1|Name=Gcaud9870.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=336bp|location=Sequence derived from alignment at NODE_584_length_21412_cov_4.339853:17674..18136- (Gracilaria caudata M_176_S67 male)
ATGGCAAAGGGAAAGAAGAAGAATACGGAGAATGTCAACCAAAGACTGGC
TCTCGTCGTCAAGTCCGGCAAGTACACTCTTGGGTACAAATCGACCATTC
GAACTTTGAGAACGGGCAAGGCAAAGCTCATCCTCATCGCTTCCAACGCT
TCACCGTTGAAGAAGTCTGAGCTGGAGTACTACGCAATGCTCGCGAAGTG
TCAGGTTCACCATTTCCAAGGGAATAACATCGATCTAGGAACCGCTTGTG
GCCGATACTTCCGCACTAGCGCTATGGCTATCACAGACCCTGGAGACAGC
GAAATTGACAACGTCTTCCTTAACTCAGAAAGTTAA