Gcaud986.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud986.t1
Unique Name	Gcaud986.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	339

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2132_length_6711_cov_4.818278	contig	NODE_2132_length_6711_cov_4.818278:5430..6531 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4787.PITG_00926T0
Max annot lvl	4776\|Peronosporales
Evalue	1.52e-07
EggNOG OGs	2CTDP@1\|root,2RFZI@2759\|Eukaryota,3QHHE@4776\|Peronosporales

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud986	Gcaud986	Gracilaria caudata M_176_S67 male	gene	NODE_2132_length_6711_cov_4.818278 5430..6531 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud986.t1	Gcaud986.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2132_length_6711_cov_4.818278 5430..6531 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud986.t1.start1	Gcaud986.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2132_length_6711_cov_4.818278 5430..5432 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud986.t1.CDS1	Gcaud986.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2132_length_6711_cov_4.818278 5430..6407 +
Gcaud986.t1.CDS2	Gcaud986.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_2132_length_6711_cov_4.818278 6493..6531 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud986.t1.exon1	Gcaud986.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2132_length_6711_cov_4.818278 5430..6407 +
Gcaud986.t1.exon2	Gcaud986.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_2132_length_6711_cov_4.818278 6493..6531 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud986.t1.intron1	Gcaud986.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_2132_length_6711_cov_4.818278 6408..6492 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud986.t1.stop1	Gcaud986.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2132_length_6711_cov_4.818278 6529..6531 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2132_length_6711_cov_4.818278:5430..6531+
coding sequence from alignment at NODE_2132_length_6711_cov_4.818278:5430..6531+

mRNA sequence

>Gcaud986.t1 ID=Gcaud986.t1|Name=Gcaud986.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=339bp
MQSREDFHPSNSFDRISNALEAQQTATEDFWSSLFLDPTDLMDEDTLELE
DIETFHSESEHEQRERCAAQRNGGLRECKYDDAFSDVTIKIADVDSFLGE
LFVVESNKILDNVINELRVTEERSLVEDAKLTRIAVFDVFLPPFLLEKLW
AYVNRVLGKRKKPPVTAIELKRVITTHVLAASYGTIVSIMTSLEQRESYF
QTEISGDRYNEVWSALSGTTRRRERVQDYGVGRSNKPVAGNELITELEQD
LSAINRKYLYIPGQAIFSLDDDHERLRLKAVTEITTLSHVNNPKKALEPV
NNALCSALSSAFLACHYSRPQEKIIHTEDIIVRKPLIS*

spliced messenger RNA

>Gcaud986.t1 ID=Gcaud986.t1|Name=Gcaud986.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at NODE_2132_length_6711_cov_4.818278:5430..6531+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCACGAGAAGATTTTCATCCGTCAAATTCGTTTGACCGCATTTC
AAATGCATTGGAAGCACAGCAGACAGCCACCGAAGATTTTTGGTCAAGTT
TGTTTCTGGATCCCACTGATTTGATGGACGAAGACACATTAGAACTCGAA
GATATCGAGACCTTTCATTCCGAAAGTGAACATGAACAGCGAGAACGTTG
TGCAGCTCAACGTAATGGTGGACTAAGAGAATGTAAATATGATGACGCGT
TCAGTGACGTCACCATCAAGATCGCCGATGTTGATTCATTTCTTGGGGAG
CTATTCGTCGTTGAATCGAACAAAATACTAGACAACGTAATCAACGAGCT
ACGAGTGACGGAAGAGAGATCATTAGTGGAAGATGCAAAGTTAACCAGAA
TAGCAGTTTTTGACGTCTTCTTGCCACCGTTTCTTCTGGAAAAGCTCTGG
GCTTATGTGAACAGGGTACTTGGTAAACGGAAAAAGCCACCCGTGACGGC
AATTGAACTTAAACGGGTGATCACTACCCATGTTCTAGCGGCTTCGTATG
GGACGATTGTTTCCATCATGACATCCCTAGAGCAGCGGGAGTCTTATTTT
CAAACAGAAATATCTGGCGACCGGTATAATGAAGTCTGGTCGGCGCTAAG
CGGTACAACCAGAAGGCGTGAAAGAGTTCAAGACTATGGTGTAGGAAGGT
CGAACAAACCAGTGGCAGGCAATGAATTAATCACAGAGCTTGAACAAGAT
CTCTCTGCAATTAACCGAAAGTATCTTTACATACCAGGACAAGCCATTTT
TAGCTTAGACGACGACCATGAGCGCTTGCGATTGAAGGCAGTGACGGAAA
TCACTACACTATCACACGTCAATAATCCGAAGAAAGCCTTAGAACCCGTT
AACAACGCTCTTTGCTCAGCGTTGAGTTCCGCATTTTTGGCCTGTCACTA
CTCAAGACCACAAGAAAAAATTATACATACCGAGGATATAATTGTAAGGA
AACCATTGATTTCATAA

protein sequence of Gcaud986.t1

>Gcaud986.t1 ID=Gcaud986.t1|Name=Gcaud986.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=339bp
MQSREDFHPSNSFDRISNALEAQQTATEDFWSSLFLDPTDLMDEDTLELE
DIETFHSESEHEQRERCAAQRNGGLRECKYDDAFSDVTIKIADVDSFLGE
LFVVESNKILDNVINELRVTEERSLVEDAKLTRIAVFDVFLPPFLLEKLW
AYVNRVLGKRKKPPVTAIELKRVITTHVLAASYGTIVSIMTSLEQRESYF
QTEISGDRYNEVWSALSGTTRRRERVQDYGVGRSNKPVAGNELITELEQD
LSAINRKYLYIPGQAIFSLDDDHERLRLKAVTEITTLSHVNNPKKALEPV
NNALCSALSSAFLACHYSRPQEKIIHTEDIIVRKPLIS*

mRNA from alignment at NODE_2132_length_6711_cov_4.818278:5430..6531+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud986.t1 ID=Gcaud986.t1|Name=Gcaud986.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1102bp|location=Sequence derived from alignment at NODE_2132_length_6711_cov_4.818278:5430..6531+ (Gracilaria caudata M_176_S67 male)
ATGCAATCACGAGAAGATTTTCATCCGTCAAATTCGTTTGACCGCATTTC
AAATGCATTGGAAGCACAGCAGACAGCCACCGAAGATTTTTGGTCAAGTT
TGTTTCTGGATCCCACTGATTTGATGGACGAAGACACATTAGAACTCGAA
GATATCGAGACCTTTCATTCCGAAAGTGAACATGAACAGCGAGAACGTTG
TGCAGCTCAACGTAATGGTGGACTAAGAGAATGTAAATATGATGACGCGT
TCAGTGACGTCACCATCAAGATCGCCGATGTTGATTCATTTCTTGGGGAG
CTATTCGTCGTTGAATCGAACAAAATACTAGACAACGTAATCAACGAGCT
ACGAGTGACGGAAGAGAGATCATTAGTGGAAGATGCAAAGTTAACCAGAA
TAGCAGTTTTTGACGTCTTCTTGCCACCGTTTCTTCTGGAAAAGCTCTGG
GCTTATGTGAACAGGGTACTTGGTAAACGGAAAAAGCCACCCGTGACGGC
AATTGAACTTAAACGGGTGATCACTACCCATGTTCTAGCGGCTTCGTATG
GGACGATTGTTTCCATCATGACATCCCTAGAGCAGCGGGAGTCTTATTTT
CAAACAGAAATATCTGGCGACCGGTATAATGAAGTCTGGTCGGCGCTAAG
CGGTACAACCAGAAGGCGTGAAAGAGTTCAAGACTATGGTGTAGGAAGGT
CGAACAAACCAGTGGCAGGCAATGAATTAATCACAGAGCTTGAACAAGAT
CTCTCTGCAATTAACCGAAAGTATCTTTACATACCAGGACAAGCCATTTT
TAGCTTAGACGACGACCATGAGCGCTTGCGATTGAAGGCAGTGACGGAAA
TCACTACACTATCACACGTCAATAATCCGAAGAAAGCCTTAGAACCCGTT
AACAACGCTCTTTGCTCAGCGTTGAGTTCCGCATTTTTGGCCTGTCACTA
CTCAAGACCACAAGAAAAAATTATACATGTATGGGAGCGGTTAGTTCAGC
TGGTGCAGGGATCGGCAACGAGAGGCTCTCTTAACGCTATGACGGACGCA
ATATTCGCTGCAGACCGAGGATATAATTGTAAGGAAACCATTGATTTCAT
AA

Coding sequence (CDS) from alignment at NODE_2132_length_6711_cov_4.818278:5430..6531+

>Gcaud986.t1 ID=Gcaud986.t1|Name=Gcaud986.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1017bp|location=Sequence derived from alignment at NODE_2132_length_6711_cov_4.818278:5430..6531+ (Gracilaria caudata M_176_S67 male)
ATGCAATCACGAGAAGATTTTCATCCGTCAAATTCGTTTGACCGCATTTC
AAATGCATTGGAAGCACAGCAGACAGCCACCGAAGATTTTTGGTCAAGTT
TGTTTCTGGATCCCACTGATTTGATGGACGAAGACACATTAGAACTCGAA
GATATCGAGACCTTTCATTCCGAAAGTGAACATGAACAGCGAGAACGTTG
TGCAGCTCAACGTAATGGTGGACTAAGAGAATGTAAATATGATGACGCGT
TCAGTGACGTCACCATCAAGATCGCCGATGTTGATTCATTTCTTGGGGAG
CTATTCGTCGTTGAATCGAACAAAATACTAGACAACGTAATCAACGAGCT
ACGAGTGACGGAAGAGAGATCATTAGTGGAAGATGCAAAGTTAACCAGAA
TAGCAGTTTTTGACGTCTTCTTGCCACCGTTTCTTCTGGAAAAGCTCTGG
GCTTATGTGAACAGGGTACTTGGTAAACGGAAAAAGCCACCCGTGACGGC
AATTGAACTTAAACGGGTGATCACTACCCATGTTCTAGCGGCTTCGTATG
GGACGATTGTTTCCATCATGACATCCCTAGAGCAGCGGGAGTCTTATTTT
CAAACAGAAATATCTGGCGACCGGTATAATGAAGTCTGGTCGGCGCTAAG
CGGTACAACCAGAAGGCGTGAAAGAGTTCAAGACTATGGTGTAGGAAGGT
CGAACAAACCAGTGGCAGGCAATGAATTAATCACAGAGCTTGAACAAGAT
CTCTCTGCAATTAACCGAAAGTATCTTTACATACCAGGACAAGCCATTTT
TAGCTTAGACGACGACCATGAGCGCTTGCGATTGAAGGCAGTGACGGAAA
TCACTACACTATCACACGTCAATAATCCGAAGAAAGCCTTAGAACCCGTT
AACAACGCTCTTTGCTCAGCGTTGAGTTCCGCATTTTTGGCCTGTCACTA
CTCAAGACCACAAGAAAAAATTATACATACCGAGGATATAATTGTAAGGA
AACCATTGATTTCATAA