Gcaud9843.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9843.t1
Unique Name	Gcaud9843.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	633

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_794_length_17858_cov_4.718298	contig	NODE_794_length_17858_cov_4.718298:10862..12760 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704320.1
Preferred name	SF3A1
PFAMs	PRP21_like_P,Surp,ubiquitin
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12825
KEGG Pathway	ko03040,map03040
KEGG Module	M00352
GOs	GO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000389,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045292,GO:0046483,GO:0048024,GO:0048232,GO:0048609,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1903311,GO:1990904
Evalue	4.54e-89
EggNOG OGs	KOG0007@1\|root,KOG0007@2759\|Eukaryota
Description	mRNA 3'-splice site recognition
COG category	A
BRITE	ko00000,ko00001,ko00002,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9843	Gcaud9843	Gracilaria caudata M_176_S67 male	gene	NODE_794_length_17858_cov_4.718298 10862..12760 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9843.t1.start1	Gcaud9843.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_794_length_17858_cov_4.718298 10862..10864 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9843.t1.CDS1	Gcaud9843.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_794_length_17858_cov_4.718298 10862..12760 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9843.t1.exon1	Gcaud9843.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_794_length_17858_cov_4.718298 10862..12760 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9843.t1.stop1	Gcaud9843.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_794_length_17858_cov_4.718298 12758..12760 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9843.t1	Gcaud9843.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_794_length_17858_cov_4.718298 10862..12760 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_794_length_17858_cov_4.718298:10862..12760+
coding sequence from alignment at NODE_794_length_17858_cov_4.718298:10862..12760+

mRNA sequence

>Gcaud9843.t1 ID=Gcaud9843.t1|Name=Gcaud9843.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=633bp
MVLQEEEKSLDGVGVIIPPPDVRSILETTAEFVAKRTAFEKMVLQKNGEE
PRFAFLHAFNPYHAYYRKRIDHYRSLKKDASSAMQKEPLHEHKSKPSQPL
NETLKAHDDATENDASKATTAGTAVVSFLKAERAKQRAARPEPREPPPDD
LFTLVSVSPAPSALSLDVMKLTAQYVANSDSQFLTALSRKEGRNSLFDFL
KPMHPHNLVFQRLVDAYKAILGSGEQKKQILESLKKQSESTDTIMEEVWY
IHNWECQKAEREYEAALDESEKMKVAQIDWYDFVVLETIEFGPDDVNLPA
PVADTRQLPKILAAAREAEKERLKNQRDVDMDIDNVAVTAKNVRVETANV
LSDIPADRILRNELVNRRANQDNVNEATVVLPSGTRVPLSKVQESMRVEL
INPSYKSEKARAAEKNRLRNLADGDEVARNLARLGQAQGTGAVYNRGDLQ
EALAVMPKAPLSEADARVKKAQPSGPKLPATSTSDEARPSKRARVEAAVD
ALSRGKKLTENEEVEKNKGKQDQTGGSSLISAEEWLAKQGNNAQVRVKLP
VHSNKDWKLQGEEIEMSAPLKKTVGKLKSALAKMTKLPANKQKLSMAGVG
FLKDGMTLASYNVGDGAVISVEVKERGGRKKH*

spliced messenger RNA

>Gcaud9843.t1 ID=Gcaud9843.t1|Name=Gcaud9843.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1899bp|location=Sequence derived from alignment at NODE_794_length_17858_cov_4.718298:10862..12760+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTTCAGGAAGAAGAAAAGTCCCTAGACGGGGTTGGTGTCATTAT
TCCACCCCCAGACGTTCGCAGTATCCTCGAAACGACTGCTGAATTCGTTG
CGAAGAGAACAGCCTTCGAGAAAATGGTTCTGCAGAAAAACGGAGAAGAA
CCGAGGTTCGCATTCTTGCACGCATTCAATCCATATCATGCCTACTATCG
AAAACGAATAGATCACTATCGAAGCCTGAAGAAAGATGCCTCGAGTGCAA
TGCAAAAAGAACCATTGCATGAGCACAAGTCCAAACCCTCCCAGCCATTG
AACGAGACTTTGAAAGCCCATGATGACGCAACCGAGAACGATGCCTCTAA
AGCAACGACAGCAGGAACGGCTGTAGTGTCCTTTCTAAAAGCGGAACGAG
CGAAACAGCGAGCTGCAAGACCTGAACCCCGAGAGCCGCCACCCGACGAC
CTGTTTACTTTAGTATCTGTTAGCCCTGCCCCGAGCGCCCTTTCTCTGGA
TGTTATGAAACTTACAGCTCAATATGTTGCGAATAGTGACAGTCAGTTTC
TCACTGCTTTAAGTCGTAAAGAGGGTCGCAACTCTCTGTTCGATTTTCTT
AAACCTATGCATCCTCATAATCTTGTATTCCAAAGGCTTGTGGACGCATA
CAAAGCAATCCTTGGTTCAGGTGAACAGAAGAAACAGATTCTGGAATCAT
TAAAGAAGCAATCGGAATCCACCGATACCATTATGGAAGAAGTTTGGTAC
ATCCATAACTGGGAATGTCAGAAAGCAGAGCGTGAGTACGAAGCAGCGCT
TGATGAGAGCGAGAAGATGAAGGTAGCCCAGATTGACTGGTATGATTTTG
TTGTGTTGGAAACTATTGAATTTGGTCCAGACGATGTCAACTTACCAGCA
CCAGTCGCAGATACTCGTCAGCTGCCGAAGATACTGGCCGCTGCTCGGGA
GGCCGAAAAGGAACGATTGAAGAATCAACGCGATGTAGACATGGACATTG
ACAATGTAGCGGTGACAGCAAAGAACGTAAGAGTGGAAACGGCGAACGTG
CTTAGTGACATTCCTGCAGACCGAATCCTGCGCAATGAGCTGGTGAATAG
GCGAGCAAACCAAGATAATGTAAACGAGGCCACTGTCGTACTACCGTCTG
GCACGCGCGTTCCATTGTCTAAGGTGCAGGAATCTATGCGAGTGGAGTTA
ATCAATCCGTCGTACAAGAGCGAAAAGGCCAGGGCGGCAGAGAAGAACCG
GCTCCGAAACCTAGCGGATGGTGATGAAGTGGCGAGAAACCTAGCCCGGC
TTGGACAAGCGCAGGGGACAGGAGCTGTATACAATCGTGGTGATTTACAG
GAAGCTTTGGCGGTTATGCCTAAGGCGCCACTGTCTGAGGCTGATGCCCG
AGTGAAGAAAGCCCAACCATCTGGACCAAAACTTCCAGCAACAAGCACGA
GTGATGAAGCGAGACCATCGAAACGAGCTAGAGTGGAAGCAGCGGTGGAT
GCGCTGTCAAGAGGAAAGAAACTGACGGAGAACGAAGAGGTTGAAAAGAA
CAAAGGGAAGCAGGATCAAACCGGAGGTTCAAGTCTGATTAGCGCAGAAG
AATGGTTGGCGAAGCAAGGGAATAATGCACAAGTACGTGTGAAGCTCCCC
GTGCATAGTAATAAAGACTGGAAGCTGCAGGGAGAAGAGATTGAAATGTC
CGCCCCGCTCAAGAAGACGGTTGGAAAGCTAAAGAGCGCATTGGCGAAAA
TGACAAAACTACCTGCTAACAAACAAAAACTCTCAATGGCCGGCGTGGGC
TTCTTGAAAGATGGGATGACATTGGCATCTTACAATGTGGGAGACGGGGC
TGTGATTAGCGTTGAAGTGAAAGAGCGAGGTGGACGAAAGAAGCATTAA

protein sequence of Gcaud9843.t1

>Gcaud9843.t1 ID=Gcaud9843.t1|Name=Gcaud9843.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=633bp
MVLQEEEKSLDGVGVIIPPPDVRSILETTAEFVAKRTAFEKMVLQKNGEE
PRFAFLHAFNPYHAYYRKRIDHYRSLKKDASSAMQKEPLHEHKSKPSQPL
NETLKAHDDATENDASKATTAGTAVVSFLKAERAKQRAARPEPREPPPDD
LFTLVSVSPAPSALSLDVMKLTAQYVANSDSQFLTALSRKEGRNSLFDFL
KPMHPHNLVFQRLVDAYKAILGSGEQKKQILESLKKQSESTDTIMEEVWY
IHNWECQKAEREYEAALDESEKMKVAQIDWYDFVVLETIEFGPDDVNLPA
PVADTRQLPKILAAAREAEKERLKNQRDVDMDIDNVAVTAKNVRVETANV
LSDIPADRILRNELVNRRANQDNVNEATVVLPSGTRVPLSKVQESMRVEL
INPSYKSEKARAAEKNRLRNLADGDEVARNLARLGQAQGTGAVYNRGDLQ
EALAVMPKAPLSEADARVKKAQPSGPKLPATSTSDEARPSKRARVEAAVD
ALSRGKKLTENEEVEKNKGKQDQTGGSSLISAEEWLAKQGNNAQVRVKLP
VHSNKDWKLQGEEIEMSAPLKKTVGKLKSALAKMTKLPANKQKLSMAGVG
FLKDGMTLASYNVGDGAVISVEVKERGGRKKH*

mRNA from alignment at NODE_794_length_17858_cov_4.718298:10862..12760+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9843.t1 ID=Gcaud9843.t1|Name=Gcaud9843.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1899bp|location=Sequence derived from alignment at NODE_794_length_17858_cov_4.718298:10862..12760+ (Gracilaria caudata M_176_S67 male)
ATGGTGCTTCAGGAAGAAGAAAAGTCCCTAGACGGGGTTGGTGTCATTAT
TCCACCCCCAGACGTTCGCAGTATCCTCGAAACGACTGCTGAATTCGTTG
CGAAGAGAACAGCCTTCGAGAAAATGGTTCTGCAGAAAAACGGAGAAGAA
CCGAGGTTCGCATTCTTGCACGCATTCAATCCATATCATGCCTACTATCG
AAAACGAATAGATCACTATCGAAGCCTGAAGAAAGATGCCTCGAGTGCAA
TGCAAAAAGAACCATTGCATGAGCACAAGTCCAAACCCTCCCAGCCATTG
AACGAGACTTTGAAAGCCCATGATGACGCAACCGAGAACGATGCCTCTAA
AGCAACGACAGCAGGAACGGCTGTAGTGTCCTTTCTAAAAGCGGAACGAG
CGAAACAGCGAGCTGCAAGACCTGAACCCCGAGAGCCGCCACCCGACGAC
CTGTTTACTTTAGTATCTGTTAGCCCTGCCCCGAGCGCCCTTTCTCTGGA
TGTTATGAAACTTACAGCTCAATATGTTGCGAATAGTGACAGTCAGTTTC
TCACTGCTTTAAGTCGTAAAGAGGGTCGCAACTCTCTGTTCGATTTTCTT
AAACCTATGCATCCTCATAATCTTGTATTCCAAAGGCTTGTGGACGCATA
CAAAGCAATCCTTGGTTCAGGTGAACAGAAGAAACAGATTCTGGAATCAT
TAAAGAAGCAATCGGAATCCACCGATACCATTATGGAAGAAGTTTGGTAC
ATCCATAACTGGGAATGTCAGAAAGCAGAGCGTGAGTACGAAGCAGCGCT
TGATGAGAGCGAGAAGATGAAGGTAGCCCAGATTGACTGGTATGATTTTG
TTGTGTTGGAAACTATTGAATTTGGTCCAGACGATGTCAACTTACCAGCA
CCAGTCGCAGATACTCGTCAGCTGCCGAAGATACTGGCCGCTGCTCGGGA
GGCCGAAAAGGAACGATTGAAGAATCAACGCGATGTAGACATGGACATTG
ACAATGTAGCGGTGACAGCAAAGAACGTAAGAGTGGAAACGGCGAACGTG
CTTAGTGACATTCCTGCAGACCGAATCCTGCGCAATGAGCTGGTGAATAG
GCGAGCAAACCAAGATAATGTAAACGAGGCCACTGTCGTACTACCGTCTG
GCACGCGCGTTCCATTGTCTAAGGTGCAGGAATCTATGCGAGTGGAGTTA
ATCAATCCGTCGTACAAGAGCGAAAAGGCCAGGGCGGCAGAGAAGAACCG
GCTCCGAAACCTAGCGGATGGTGATGAAGTGGCGAGAAACCTAGCCCGGC
TTGGACAAGCGCAGGGGACAGGAGCTGTATACAATCGTGGTGATTTACAG
GAAGCTTTGGCGGTTATGCCTAAGGCGCCACTGTCTGAGGCTGATGCCCG
AGTGAAGAAAGCCCAACCATCTGGACCAAAACTTCCAGCAACAAGCACGA
GTGATGAAGCGAGACCATCGAAACGAGCTAGAGTGGAAGCAGCGGTGGAT
GCGCTGTCAAGAGGAAAGAAACTGACGGAGAACGAAGAGGTTGAAAAGAA
CAAAGGGAAGCAGGATCAAACCGGAGGTTCAAGTCTGATTAGCGCAGAAG
AATGGTTGGCGAAGCAAGGGAATAATGCACAAGTACGTGTGAAGCTCCCC
GTGCATAGTAATAAAGACTGGAAGCTGCAGGGAGAAGAGATTGAAATGTC
CGCCCCGCTCAAGAAGACGGTTGGAAAGCTAAAGAGCGCATTGGCGAAAA
TGACAAAACTACCTGCTAACAAACAAAAACTCTCAATGGCCGGCGTGGGC
TTCTTGAAAGATGGGATGACATTGGCATCTTACAATGTGGGAGACGGGGC
TGTGATTAGCGTTGAAGTGAAAGAGCGAGGTGGACGAAAGAAGCATTAA

Coding sequence (CDS) from alignment at NODE_794_length_17858_cov_4.718298:10862..12760+

>Gcaud9843.t1 ID=Gcaud9843.t1|Name=Gcaud9843.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1899bp|location=Sequence derived from alignment at NODE_794_length_17858_cov_4.718298:10862..12760+ (Gracilaria caudata M_176_S67 male)
ATGGTGCTTCAGGAAGAAGAAAAGTCCCTAGACGGGGTTGGTGTCATTAT
TCCACCCCCAGACGTTCGCAGTATCCTCGAAACGACTGCTGAATTCGTTG
CGAAGAGAACAGCCTTCGAGAAAATGGTTCTGCAGAAAAACGGAGAAGAA
CCGAGGTTCGCATTCTTGCACGCATTCAATCCATATCATGCCTACTATCG
AAAACGAATAGATCACTATCGAAGCCTGAAGAAAGATGCCTCGAGTGCAA
TGCAAAAAGAACCATTGCATGAGCACAAGTCCAAACCCTCCCAGCCATTG
AACGAGACTTTGAAAGCCCATGATGACGCAACCGAGAACGATGCCTCTAA
AGCAACGACAGCAGGAACGGCTGTAGTGTCCTTTCTAAAAGCGGAACGAG
CGAAACAGCGAGCTGCAAGACCTGAACCCCGAGAGCCGCCACCCGACGAC
CTGTTTACTTTAGTATCTGTTAGCCCTGCCCCGAGCGCCCTTTCTCTGGA
TGTTATGAAACTTACAGCTCAATATGTTGCGAATAGTGACAGTCAGTTTC
TCACTGCTTTAAGTCGTAAAGAGGGTCGCAACTCTCTGTTCGATTTTCTT
AAACCTATGCATCCTCATAATCTTGTATTCCAAAGGCTTGTGGACGCATA
CAAAGCAATCCTTGGTTCAGGTGAACAGAAGAAACAGATTCTGGAATCAT
TAAAGAAGCAATCGGAATCCACCGATACCATTATGGAAGAAGTTTGGTAC
ATCCATAACTGGGAATGTCAGAAAGCAGAGCGTGAGTACGAAGCAGCGCT
TGATGAGAGCGAGAAGATGAAGGTAGCCCAGATTGACTGGTATGATTTTG
TTGTGTTGGAAACTATTGAATTTGGTCCAGACGATGTCAACTTACCAGCA
CCAGTCGCAGATACTCGTCAGCTGCCGAAGATACTGGCCGCTGCTCGGGA
GGCCGAAAAGGAACGATTGAAGAATCAACGCGATGTAGACATGGACATTG
ACAATGTAGCGGTGACAGCAAAGAACGTAAGAGTGGAAACGGCGAACGTG
CTTAGTGACATTCCTGCAGACCGAATCCTGCGCAATGAGCTGGTGAATAG
GCGAGCAAACCAAGATAATGTAAACGAGGCCACTGTCGTACTACCGTCTG
GCACGCGCGTTCCATTGTCTAAGGTGCAGGAATCTATGCGAGTGGAGTTA
ATCAATCCGTCGTACAAGAGCGAAAAGGCCAGGGCGGCAGAGAAGAACCG
GCTCCGAAACCTAGCGGATGGTGATGAAGTGGCGAGAAACCTAGCCCGGC
TTGGACAAGCGCAGGGGACAGGAGCTGTATACAATCGTGGTGATTTACAG
GAAGCTTTGGCGGTTATGCCTAAGGCGCCACTGTCTGAGGCTGATGCCCG
AGTGAAGAAAGCCCAACCATCTGGACCAAAACTTCCAGCAACAAGCACGA
GTGATGAAGCGAGACCATCGAAACGAGCTAGAGTGGAAGCAGCGGTGGAT
GCGCTGTCAAGAGGAAAGAAACTGACGGAGAACGAAGAGGTTGAAAAGAA
CAAAGGGAAGCAGGATCAAACCGGAGGTTCAAGTCTGATTAGCGCAGAAG
AATGGTTGGCGAAGCAAGGGAATAATGCACAAGTACGTGTGAAGCTCCCC
GTGCATAGTAATAAAGACTGGAAGCTGCAGGGAGAAGAGATTGAAATGTC
CGCCCCGCTCAAGAAGACGGTTGGAAAGCTAAAGAGCGCATTGGCGAAAA
TGACAAAACTACCTGCTAACAAACAAAAACTCTCAATGGCCGGCGTGGGC
TTCTTGAAAGATGGGATGACATTGGCATCTTACAATGTGGGAGACGGGGC
TGTGATTAGCGTTGAAGTGAAAGAGCGAGGTGGACGAAAGAAGCATTAA