Gcaud9827.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9827.t1
Unique Name	Gcaud9827.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	209

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_155_length_42800_cov_4.630125	contig	NODE_155_length_42800_cov_4.630125:33315..33941 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_131579
Preferred name	AMMECR1L
PFAMs	AMMECR1
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896
Evalue	2.19e-47
EggNOG OGs	COG2078@1\|root,KOG3274@2759\|Eukaryota
Description	AMMECR1
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9827	Gcaud9827	Gracilaria caudata M_176_S67 male	gene	NODE_155_length_42800_cov_4.630125 33315..33941 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9827.t1.stop1	Gcaud9827.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_155_length_42800_cov_4.630125 33315..33317 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9827.t1.CDS1	Gcaud9827.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_155_length_42800_cov_4.630125 33315..33941 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9827.t1.exon1	Gcaud9827.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_155_length_42800_cov_4.630125 33315..33941 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9827.t1.start1	Gcaud9827.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_155_length_42800_cov_4.630125 33939..33941 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9827.t1	Gcaud9827.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_155_length_42800_cov_4.630125 33315..33941 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_155_length_42800_cov_4.630125:33315..33941-
coding sequence from alignment at NODE_155_length_42800_cov_4.630125:33315..33941-

mRNA sequence

>Gcaud9827.t1 ID=Gcaud9827.t1|Name=Gcaud9827.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=209bp
MAPSMVDEAPSRTEATVQMCARAFETIATQLRPDLPSPPDFDLPSREGGV
FVTWSVPRGRDSHYSLRGCIGTLTPAPLHTAVPRYAAQAAFHDSRFDPIS
SSELTKLKVGVSVLSQFEPAQHVYDWTAGVHGIVLYLPGGYSATYLPEVC
AEHGWTKEFCVRSLAEKAGFRGLVDESVLGSATVTRYQSSKTELAFDGYI
KMIEDAKQ*

spliced messenger RNA

>Gcaud9827.t1 ID=Gcaud9827.t1|Name=Gcaud9827.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=627bp|location=Sequence derived from alignment at NODE_155_length_42800_cov_4.630125:33315..33941- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGTCTATGGTTGACGAAGCGCCATCGCGCACTGAAGCCACTGT
TCAGATGTGCGCAAGGGCCTTCGAAACAATTGCCACTCAGCTACGTCCTG
ATCTCCCATCTCCTCCGGATTTTGATTTACCCAGCCGCGAGGGTGGAGTA
TTTGTAACGTGGAGCGTTCCGCGTGGGAGAGATTCTCACTACTCTCTACG
CGGCTGCATCGGAACGCTTACGCCAGCCCCATTGCACACTGCTGTTCCTC
GTTATGCGGCCCAAGCAGCGTTTCATGATTCGCGCTTCGATCCGATTTCT
TCATCTGAGTTAACAAAGCTGAAAGTCGGTGTGAGCGTGTTGTCACAGTT
TGAGCCTGCTCAACATGTATATGACTGGACAGCGGGTGTGCATGGTATCG
TATTATACTTGCCCGGAGGTTACTCAGCGACATATCTACCCGAAGTTTGT
GCAGAACATGGGTGGACAAAAGAATTTTGTGTGAGAAGCCTTGCAGAAAA
AGCTGGTTTTAGAGGACTTGTGGACGAATCGGTTTTGGGCTCCGCTACTG
TAACTCGTTATCAATCCAGTAAGACCGAACTTGCATTTGATGGCTACATC
AAGATGATTGAAGATGCTAAGCAATGA

protein sequence of Gcaud9827.t1

>Gcaud9827.t1 ID=Gcaud9827.t1|Name=Gcaud9827.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=209bp
MAPSMVDEAPSRTEATVQMCARAFETIATQLRPDLPSPPDFDLPSREGGV
FVTWSVPRGRDSHYSLRGCIGTLTPAPLHTAVPRYAAQAAFHDSRFDPIS
SSELTKLKVGVSVLSQFEPAQHVYDWTAGVHGIVLYLPGGYSATYLPEVC
AEHGWTKEFCVRSLAEKAGFRGLVDESVLGSATVTRYQSSKTELAFDGYI
KMIEDAKQ*

mRNA from alignment at NODE_155_length_42800_cov_4.630125:33315..33941-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9827.t1 ID=Gcaud9827.t1|Name=Gcaud9827.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=627bp|location=Sequence derived from alignment at NODE_155_length_42800_cov_4.630125:33315..33941- (Gracilaria caudata M_176_S67 male)
ATGGCTCCGTCTATGGTTGACGAAGCGCCATCGCGCACTGAAGCCACTGT
TCAGATGTGCGCAAGGGCCTTCGAAACAATTGCCACTCAGCTACGTCCTG
ATCTCCCATCTCCTCCGGATTTTGATTTACCCAGCCGCGAGGGTGGAGTA
TTTGTAACGTGGAGCGTTCCGCGTGGGAGAGATTCTCACTACTCTCTACG
CGGCTGCATCGGAACGCTTACGCCAGCCCCATTGCACACTGCTGTTCCTC
GTTATGCGGCCCAAGCAGCGTTTCATGATTCGCGCTTCGATCCGATTTCT
TCATCTGAGTTAACAAAGCTGAAAGTCGGTGTGAGCGTGTTGTCACAGTT
TGAGCCTGCTCAACATGTATATGACTGGACAGCGGGTGTGCATGGTATCG
TATTATACTTGCCCGGAGGTTACTCAGCGACATATCTACCCGAAGTTTGT
GCAGAACATGGGTGGACAAAAGAATTTTGTGTGAGAAGCCTTGCAGAAAA
AGCTGGTTTTAGAGGACTTGTGGACGAATCGGTTTTGGGCTCCGCTACTG
TAACTCGTTATCAATCCAGTAAGACCGAACTTGCATTTGATGGCTACATC
AAGATGATTGAAGATGCTAAGCAATGA

Coding sequence (CDS) from alignment at NODE_155_length_42800_cov_4.630125:33315..33941-

>Gcaud9827.t1 ID=Gcaud9827.t1|Name=Gcaud9827.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=627bp|location=Sequence derived from alignment at NODE_155_length_42800_cov_4.630125:33315..33941- (Gracilaria caudata M_176_S67 male)
ATGGCTCCGTCTATGGTTGACGAAGCGCCATCGCGCACTGAAGCCACTGT
TCAGATGTGCGCAAGGGCCTTCGAAACAATTGCCACTCAGCTACGTCCTG
ATCTCCCATCTCCTCCGGATTTTGATTTACCCAGCCGCGAGGGTGGAGTA
TTTGTAACGTGGAGCGTTCCGCGTGGGAGAGATTCTCACTACTCTCTACG
CGGCTGCATCGGAACGCTTACGCCAGCCCCATTGCACACTGCTGTTCCTC
GTTATGCGGCCCAAGCAGCGTTTCATGATTCGCGCTTCGATCCGATTTCT
TCATCTGAGTTAACAAAGCTGAAAGTCGGTGTGAGCGTGTTGTCACAGTT
TGAGCCTGCTCAACATGTATATGACTGGACAGCGGGTGTGCATGGTATCG
TATTATACTTGCCCGGAGGTTACTCAGCGACATATCTACCCGAAGTTTGT
GCAGAACATGGGTGGACAAAAGAATTTTGTGTGAGAAGCCTTGCAGAAAA
AGCTGGTTTTAGAGGACTTGTGGACGAATCGGTTTTGGGCTCCGCTACTG
TAACTCGTTATCAATCCAGTAAGACCGAACTTGCATTTGATGGCTACATC
AAGATGATTGAAGATGCTAAGCAATGA