Gcaud9808.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9808.t1
Unique Name	Gcaud9808.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	497

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_649_length_20269_cov_4.054118	contig	NODE_649_length_20269_cov_4.054118:16930..18503 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9808	Gcaud9808	Gracilaria caudata M_176_S67 male	gene	NODE_649_length_20269_cov_4.054118 16930..18503 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9808.t1	Gcaud9808.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_649_length_20269_cov_4.054118 16930..18503 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9808.t1.stop1	Gcaud9808.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_649_length_20269_cov_4.054118 16930..16932 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9808.t1.CDS1	Gcaud9808.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_649_length_20269_cov_4.054118 16930..17259 -
Gcaud9808.t1.CDS2	Gcaud9808.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_649_length_20269_cov_4.054118 17343..18503 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9808.t1.exon1	Gcaud9808.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_649_length_20269_cov_4.054118 16930..17259 -
Gcaud9808.t1.exon2	Gcaud9808.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_649_length_20269_cov_4.054118 17343..18503 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9808.t1.intron1	Gcaud9808.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_649_length_20269_cov_4.054118 17260..17342 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9808.t1.start1	Gcaud9808.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_649_length_20269_cov_4.054118 18501..18503 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_649_length_20269_cov_4.054118:16930..18503-
coding sequence from alignment at NODE_649_length_20269_cov_4.054118:16930..18503-

mRNA sequence

>Gcaud9808.t1 ID=Gcaud9808.t1|Name=Gcaud9808.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=497bp
MSSTFETAVASATDDSTRKKQTSAKSMSTIVRRDALQGVINSGLRQQRFL
GRLINFVPGLSHRRVSVEANKNCAAASVFYAPHQRGITPCQFKKVKPDAS
HVVRRTDEFFVSFIGMSVAAHDYEIGFSTHKTDNELLMYSMQCLTRSQGL
NHQQREVEEELEREKISPPNQAPNQASNQDASLSTPEVDVEGDRPRNEGV
VTTTIDVEQETAQNARVTTGIPSEDRVYIHYDPVVDARNTGTKADTFVNI
PATKRLYTCSEQLMLTEKHGDDDNGDHENQKSHCLESLFVRFTVMEIDRI
SDLQARAVIGVDHFGSFVSQNAGSIPYIQLLTKAFAVASSVGKQGLRKYS
RPDHVLTVDKEFFLANPEGDSGVTTNTDEVKQENFLRYGYYFFLSKPVQA
KLYTRTSSADEHIPLMLKRTDRRPKPGAPECEYIPLTEVSYVVLKVRRGC
CKLSPDQMVRRSEGHRLRLDNMLTMSTAIEVLAEAERKKSSLRPRL*

spliced messenger RNA

>Gcaud9808.t1 ID=Gcaud9808.t1|Name=Gcaud9808.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at NODE_649_length_20269_cov_4.054118:16930..18503- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCGACGTTCGAAACGGCGGTTGCTTCGGCTACAGATGATAGCAC
ACGAAAGAAACAAACGTCAGCAAAGTCAATGAGCACAATTGTTCGACGAG
ATGCGCTGCAAGGAGTAATTAATTCCGGTCTCAGACAACAACGTTTCCTT
GGAAGACTGATAAACTTTGTTCCTGGACTTTCTCACAGAAGAGTGAGTGT
GGAAGCGAACAAAAACTGCGCGGCTGCTTCAGTCTTCTACGCACCACACC
AAAGAGGGATAACTCCATGTCAGTTCAAGAAAGTGAAACCCGACGCGAGC
CATGTAGTGCGCCGCACGGATGAGTTCTTTGTATCTTTTATAGGCATGAG
TGTCGCGGCTCATGATTATGAAATCGGTTTCAGTACACATAAAACCGACA
ACGAGTTGCTCATGTACAGTATGCAGTGTTTAACAAGATCCCAAGGGTTA
AACCATCAGCAGAGAGAAGTCGAAGAAGAACTCGAGAGAGAAAAAATTTC
TCCTCCGAATCAAGCTCCGAACCAAGCTTCGAACCAAGATGCCAGCTTGT
CTACTCCCGAGGTAGATGTTGAAGGCGACCGGCCTCGAAATGAAGGGGTC
GTGACGACGACAATTGATGTTGAGCAAGAAACAGCTCAGAACGCTCGCGT
GACTACTGGTATTCCATCGGAAGATAGAGTGTACATTCATTACGACCCGG
TCGTGGATGCGCGCAATACCGGGACCAAGGCCGATACATTCGTCAACATA
CCTGCAACGAAAAGGTTATATACCTGTAGCGAGCAACTGATGTTGACCGA
AAAGCATGGTGATGATGACAACGGCGATCATGAAAATCAAAAGTCCCACT
GCCTTGAATCGCTCTTTGTAAGGTTCACGGTGATGGAAATCGACAGGATA
AGTGACTTGCAGGCACGGGCAGTTATAGGCGTTGATCATTTCGGAAGTTT
TGTATCCCAAAACGCCGGGAGTATTCCATATATTCAACTTCTTACTAAGG
CTTTTGCTGTCGCGAGTTCCGTGGGAAAGCAGGGTTTACGAAAATATTCA
AGGCCAGATCACGTGCTCACAGTGGACAAAGAGTTTTTCCTTGCGAACCC
TGAGGGAGACAGCGGCGTCACAACTAACACTGACGAAGTGAAGCAAGAGA
ATTTCTTGCGGTATGGTTACTACTTCTTTCTCAGCAAACCGGTTCAAGCA
AAACTGTACACCCGTACAAGTTCTGCTGATGAACATATCCCGTTGATGTT
GAAACGAACTGATCGTAGGCCCAAGCCGGGTGCACCTGAGTGCGAATACA
TTCCACTGACAGAAGTGAGTTATGTTGTATTGAAGGTCAGGCGCGGTTGC
TGCAAACTGTCGCCGGACCAAATGGTCAGGCGAAGCGAAGGGCATAGACT
GAGATTGGATAACATGCTCACTATGAGCACAGCAATTGAAGTGTTGGCAG
AGGCTGAAAGGAAGAAAAGCAGCCTTCGACCAAGGCTGTAG

protein sequence of Gcaud9808.t1

>Gcaud9808.t1 ID=Gcaud9808.t1|Name=Gcaud9808.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=497bp
MSSTFETAVASATDDSTRKKQTSAKSMSTIVRRDALQGVINSGLRQQRFL
GRLINFVPGLSHRRVSVEANKNCAAASVFYAPHQRGITPCQFKKVKPDAS
HVVRRTDEFFVSFIGMSVAAHDYEIGFSTHKTDNELLMYSMQCLTRSQGL
NHQQREVEEELEREKISPPNQAPNQASNQDASLSTPEVDVEGDRPRNEGV
VTTTIDVEQETAQNARVTTGIPSEDRVYIHYDPVVDARNTGTKADTFVNI
PATKRLYTCSEQLMLTEKHGDDDNGDHENQKSHCLESLFVRFTVMEIDRI
SDLQARAVIGVDHFGSFVSQNAGSIPYIQLLTKAFAVASSVGKQGLRKYS
RPDHVLTVDKEFFLANPEGDSGVTTNTDEVKQENFLRYGYYFFLSKPVQA
KLYTRTSSADEHIPLMLKRTDRRPKPGAPECEYIPLTEVSYVVLKVRRGC
CKLSPDQMVRRSEGHRLRLDNMLTMSTAIEVLAEAERKKSSLRPRL*

mRNA from alignment at NODE_649_length_20269_cov_4.054118:16930..18503-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9808.t1 ID=Gcaud9808.t1|Name=Gcaud9808.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1574bp|location=Sequence derived from alignment at NODE_649_length_20269_cov_4.054118:16930..18503- (Gracilaria caudata M_176_S67 male)
ATGTCTTCGACGTTCGAAACGGCGGTTGCTTCGGCTACAGATGATAGCAC
ACGAAAGAAACAAACGTCAGCAAAGTCAATGAGCACAATTGTTCGACGAG
ATGCGCTGCAAGGAGTAATTAATTCCGGTCTCAGACAACAACGTTTCCTT
GGAAGACTGATAAACTTTGTTCCTGGACTTTCTCACAGAAGAGTGAGTGT
GGAAGCGAACAAAAACTGCGCGGCTGCTTCAGTCTTCTACGCACCACACC
AAAGAGGGATAACTCCATGTCAGTTCAAGAAAGTGAAACCCGACGCGAGC
CATGTAGTGCGCCGCACGGATGAGTTCTTTGTATCTTTTATAGGCATGAG
TGTCGCGGCTCATGATTATGAAATCGGTTTCAGTACACATAAAACCGACA
ACGAGTTGCTCATGTACAGTATGCAGTGTTTAACAAGATCCCAAGGGTTA
AACCATCAGCAGAGAGAAGTCGAAGAAGAACTCGAGAGAGAAAAAATTTC
TCCTCCGAATCAAGCTCCGAACCAAGCTTCGAACCAAGATGCCAGCTTGT
CTACTCCCGAGGTAGATGTTGAAGGCGACCGGCCTCGAAATGAAGGGGTC
GTGACGACGACAATTGATGTTGAGCAAGAAACAGCTCAGAACGCTCGCGT
GACTACTGGTATTCCATCGGAAGATAGAGTGTACATTCATTACGACCCGG
TCGTGGATGCGCGCAATACCGGGACCAAGGCCGATACATTCGTCAACATA
CCTGCAACGAAAAGGTTATATACCTGTAGCGAGCAACTGATGTTGACCGA
AAAGCATGGTGATGATGACAACGGCGATCATGAAAATCAAAAGTCCCACT
GCCTTGAATCGCTCTTTGTAAGGTTCACGGTGATGGAAATCGACAGGATA
AGTGACTTGCAGGCACGGGCAGTTATAGGCGTTGATCATTTCGGAAGTTT
TGTATCCCAAAACGCCGGGAGTATTCCATATATTCAACTTCTTACTAAGG
CTTTTGCTGTCGCGAGTTCCGTGGGAAAGCAGGGTTTACGAAAATATTCA
AGGCCAGATCACGTGCTCACAGTGGACAAAGAGTTTTTCCTTGCGAACCC
TGAGGGAGACAGCGGCGTCACAACTAACACTGACGAAGTGAAGCAAGAGA
ATTTCTTGCGGGTAAGTTTGTTAATCTTGGGCTTCAAGAAGCATCGAATA
TCATTTCTAACCAAACAATGTTCCTTTCCACTTCTTTCCCGTAGTATGGT
TACTACTTCTTTCTCAGCAAACCGGTTCAAGCAAAACTGTACACCCGTAC
AAGTTCTGCTGATGAACATATCCCGTTGATGTTGAAACGAACTGATCGTA
GGCCCAAGCCGGGTGCACCTGAGTGCGAATACATTCCACTGACAGAAGTG
AGTTATGTTGTATTGAAGGTCAGGCGCGGTTGCTGCAAACTGTCGCCGGA
CCAAATGGTCAGGCGAAGCGAAGGGCATAGACTGAGATTGGATAACATGC
TCACTATGAGCACAGCAATTGAAGTGTTGGCAGAGGCTGAAAGGAAGAAA
AGCAGCCTTCGACCAAGGCTGTAG

Coding sequence (CDS) from alignment at NODE_649_length_20269_cov_4.054118:16930..18503-

>Gcaud9808.t1 ID=Gcaud9808.t1|Name=Gcaud9808.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1491bp|location=Sequence derived from alignment at NODE_649_length_20269_cov_4.054118:16930..18503- (Gracilaria caudata M_176_S67 male)
ATGTCTTCGACGTTCGAAACGGCGGTTGCTTCGGCTACAGATGATAGCAC
ACGAAAGAAACAAACGTCAGCAAAGTCAATGAGCACAATTGTTCGACGAG
ATGCGCTGCAAGGAGTAATTAATTCCGGTCTCAGACAACAACGTTTCCTT
GGAAGACTGATAAACTTTGTTCCTGGACTTTCTCACAGAAGAGTGAGTGT
GGAAGCGAACAAAAACTGCGCGGCTGCTTCAGTCTTCTACGCACCACACC
AAAGAGGGATAACTCCATGTCAGTTCAAGAAAGTGAAACCCGACGCGAGC
CATGTAGTGCGCCGCACGGATGAGTTCTTTGTATCTTTTATAGGCATGAG
TGTCGCGGCTCATGATTATGAAATCGGTTTCAGTACACATAAAACCGACA
ACGAGTTGCTCATGTACAGTATGCAGTGTTTAACAAGATCCCAAGGGTTA
AACCATCAGCAGAGAGAAGTCGAAGAAGAACTCGAGAGAGAAAAAATTTC
TCCTCCGAATCAAGCTCCGAACCAAGCTTCGAACCAAGATGCCAGCTTGT
CTACTCCCGAGGTAGATGTTGAAGGCGACCGGCCTCGAAATGAAGGGGTC
GTGACGACGACAATTGATGTTGAGCAAGAAACAGCTCAGAACGCTCGCGT
GACTACTGGTATTCCATCGGAAGATAGAGTGTACATTCATTACGACCCGG
TCGTGGATGCGCGCAATACCGGGACCAAGGCCGATACATTCGTCAACATA
CCTGCAACGAAAAGGTTATATACCTGTAGCGAGCAACTGATGTTGACCGA
AAAGCATGGTGATGATGACAACGGCGATCATGAAAATCAAAAGTCCCACT
GCCTTGAATCGCTCTTTGTAAGGTTCACGGTGATGGAAATCGACAGGATA
AGTGACTTGCAGGCACGGGCAGTTATAGGCGTTGATCATTTCGGAAGTTT
TGTATCCCAAAACGCCGGGAGTATTCCATATATTCAACTTCTTACTAAGG
CTTTTGCTGTCGCGAGTTCCGTGGGAAAGCAGGGTTTACGAAAATATTCA
AGGCCAGATCACGTGCTCACAGTGGACAAAGAGTTTTTCCTTGCGAACCC
TGAGGGAGACAGCGGCGTCACAACTAACACTGACGAAGTGAAGCAAGAGA
ATTTCTTGCGGTATGGTTACTACTTCTTTCTCAGCAAACCGGTTCAAGCA
AAACTGTACACCCGTACAAGTTCTGCTGATGAACATATCCCGTTGATGTT
GAAACGAACTGATCGTAGGCCCAAGCCGGGTGCACCTGAGTGCGAATACA
TTCCACTGACAGAAGTGAGTTATGTTGTATTGAAGGTCAGGCGCGGTTGC
TGCAAACTGTCGCCGGACCAAATGGTCAGGCGAAGCGAAGGGCATAGACT
GAGATTGGATAACATGCTCACTATGAGCACAGCAATTGAAGTGTTGGCAG
AGGCTGAAAGGAAGAAAAGCAGCCTTCGACCAAGGCTGTAG