Gcaud9801.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9801.t1
Unique Name	Gcaud9801.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	649

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_649_length_20269_cov_4.054118	contig	NODE_649_length_20269_cov_4.054118:71..2017 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9801	Gcaud9801	Gracilaria caudata M_176_S67 male	gene	NODE_649_length_20269_cov_4.054118 71..2017 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9801.t1.start1	Gcaud9801.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_649_length_20269_cov_4.054118 71..73 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9801.t1.CDS1	Gcaud9801.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_649_length_20269_cov_4.054118 71..2017 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9801.t1.exon1	Gcaud9801.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_649_length_20269_cov_4.054118 71..2017 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9801.t1.stop1	Gcaud9801.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_649_length_20269_cov_4.054118 2015..2017 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9801.t1	Gcaud9801.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_649_length_20269_cov_4.054118 71..2017 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_649_length_20269_cov_4.054118:71..2017+
coding sequence from alignment at NODE_649_length_20269_cov_4.054118:71..2017+

mRNA sequence

>Gcaud9801.t1 ID=Gcaud9801.t1|Name=Gcaud9801.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=649bp
MTAVPSEQSALPKQWADEMALASSTLSSSASLPKSPPDTLGARVFDSQLD
GFLHRFQHQILAARALKDDLDRFASHDDPLYQLKKRNFKLKMEHIRSLFA
TEGEHFVSSLERTNPKLTIAACGQNTIELAQGIERLQSAVDEEQSKRAAA
ATASVTASAAASAAPRPTRTPTPPPPALAAITPLSSPDRPTHNVVSAHPA
STVGHTLNNLSSEETLQLMQSDIQALKLELMRLHRVKATASPNNGLPPPY
APPSAASSRPDTPALTSSTVSPDAKGSNAPPIPASILANNNVSVVRVTGR
STAPNYVSHLEQMKTRLEALEKKPLSRRAKSAARLGRTQTMSSMYETRAG
DENQNPNVSAMVTPPRGVRRQHRSVSTTSPPVAASRKPLTPPPLEQFRSE
VSPHTTPSPVRLGRERTSASPARLYFDAPEDMLSRPQSHAAARDIQRYSL
KVSRRFGPSEMEMPAEPRAKSAVTVSPSRRRGAMQEGGKSVGNALAEVPA
PLGPPSTIDTTGSGGRVVEEIEGDMWVRKGVVWKRWRRRYASIVSHPFFG
KAICLFSYDSGGGVISTRSQIVVLANSLCKALREKLEIGGQERFMFVLRT
ETKEYFFAAETDEIRRNWIKELKDAARKDAGRMLHTTKGRSMAFRRRN*

spliced messenger RNA

>Gcaud9801.t1 ID=Gcaud9801.t1|Name=Gcaud9801.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at NODE_649_length_20269_cov_4.054118:71..2017+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCGTGCCGTCCGAGCAGTCCGCGCTGCCGAAGCAATGGGCCGA
TGAGATGGCCTTGGCGTCCTCCACTCTCTCCTCGTCCGCCTCTCTGCCCA
AGTCGCCGCCCGATACGCTTGGCGCCCGCGTGTTCGACTCCCAGCTTGAC
GGCTTTCTGCACCGCTTTCAACACCAGATCCTCGCCGCGCGCGCGCTCAA
GGACGATCTTGATCGCTTTGCGTCGCACGACGACCCGCTGTACCAGCTCA
AAAAGCGCAACTTCAAGCTCAAGATGGAGCATATTCGCTCGCTCTTCGCC
ACCGAAGGCGAGCACTTTGTTAGCAGTCTGGAGCGCACCAACCCAAAGCT
CACCATCGCCGCGTGCGGCCAGAACACCATAGAGCTTGCGCAGGGCATTG
AGAGGCTGCAGAGCGCCGTCGACGAAGAGCAGAGCAAACGCGCCGCTGCC
GCCACTGCCTCGGTCACTGCCTCTGCTGCCGCCTCTGCCGCCCCGCGCCC
CACTCGCACCCCCACTCCCCCACCCCCCGCTCTCGCCGCAATCACCCCAC
TCTCCTCCCCGGACCGCCCCACGCACAACGTCGTGTCCGCACATCCGGCC
TCCACCGTCGGCCACACGCTCAACAACCTCAGCTCCGAGGAGACGCTGCA
GCTCATGCAGAGCGACATCCAGGCGCTCAAACTGGAGCTCATGCGTCTGC
ACCGCGTCAAGGCCACCGCCTCGCCCAACAACGGTCTGCCGCCGCCATAC
GCCCCCCCGAGCGCGGCGTCGTCGCGTCCCGACACCCCGGCGCTCACCTC
CTCCACCGTGTCGCCCGACGCAAAGGGCTCCAACGCCCCGCCCATCCCGG
CGTCCATTCTGGCCAACAACAACGTCAGCGTGGTGCGCGTCACGGGCAGA
TCCACTGCACCCAACTATGTGTCGCATCTTGAGCAGATGAAGACGCGTCT
GGAGGCGTTGGAAAAGAAGCCACTCTCGCGTCGAGCCAAGTCTGCCGCCC
GTCTGGGCCGCACGCAGACCATGAGCTCCATGTACGAGACACGCGCCGGC
GATGAGAACCAGAACCCCAACGTGTCTGCAATGGTCACGCCGCCCAGGGG
CGTGCGACGTCAGCACCGCTCTGTGTCCACCACTTCTCCACCGGTGGCAG
CTTCGAGAAAGCCGCTTACTCCGCCGCCGCTAGAACAGTTCCGCTCCGAG
GTCTCGCCGCATACCACGCCGTCGCCGGTGCGTCTGGGAAGGGAGCGCAC
GTCGGCAAGTCCGGCCAGGTTGTACTTTGACGCACCGGAGGATATGTTGT
CTCGGCCGCAGTCTCATGCGGCGGCTCGCGATATTCAGAGGTATAGTCTG
AAGGTATCTCGCCGATTCGGCCCGAGCGAAATGGAGATGCCGGCGGAGCC
GCGCGCCAAGTCGGCTGTGACTGTGTCGCCCAGTAGGCGGCGGGGTGCGA
TGCAGGAAGGTGGCAAGTCTGTGGGCAATGCCTTGGCAGAGGTGCCTGCG
CCGTTGGGACCGCCGTCCACGATTGACACCACGGGCAGCGGAGGACGTGT
GGTGGAGGAGATCGAGGGCGATATGTGGGTGAGAAAGGGAGTGGTGTGGA
AGCGGTGGAGAAGACGTTATGCGAGCATTGTGTCGCATCCGTTCTTTGGA
AAGGCCATTTGTCTGTTCAGCTACGACTCTGGTGGCGGGGTGATCAGTAC
CAGGAGCCAGATTGTGGTGTTGGCCAACTCACTTTGCAAGGCGTTGAGGG
AGAAGTTGGAGATTGGTGGACAGGAACGGTTTATGTTTGTGCTCAGGACG
GAGACGAAGGAGTACTTCTTCGCGGCGGAGACGGATGAAATTCGTAGGAA
CTGGATCAAGGAGTTGAAGGATGCGGCCAGAAAGGACGCTGGCAGGATGT
TGCACACAACCAAGGGGCGTTCCATGGCGTTCCGGAGACGTAACTGA

protein sequence of Gcaud9801.t1

>Gcaud9801.t1 ID=Gcaud9801.t1|Name=Gcaud9801.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=649bp
MTAVPSEQSALPKQWADEMALASSTLSSSASLPKSPPDTLGARVFDSQLD
GFLHRFQHQILAARALKDDLDRFASHDDPLYQLKKRNFKLKMEHIRSLFA
TEGEHFVSSLERTNPKLTIAACGQNTIELAQGIERLQSAVDEEQSKRAAA
ATASVTASAAASAAPRPTRTPTPPPPALAAITPLSSPDRPTHNVVSAHPA
STVGHTLNNLSSEETLQLMQSDIQALKLELMRLHRVKATASPNNGLPPPY
APPSAASSRPDTPALTSSTVSPDAKGSNAPPIPASILANNNVSVVRVTGR
STAPNYVSHLEQMKTRLEALEKKPLSRRAKSAARLGRTQTMSSMYETRAG
DENQNPNVSAMVTPPRGVRRQHRSVSTTSPPVAASRKPLTPPPLEQFRSE
VSPHTTPSPVRLGRERTSASPARLYFDAPEDMLSRPQSHAAARDIQRYSL
KVSRRFGPSEMEMPAEPRAKSAVTVSPSRRRGAMQEGGKSVGNALAEVPA
PLGPPSTIDTTGSGGRVVEEIEGDMWVRKGVVWKRWRRRYASIVSHPFFG
KAICLFSYDSGGGVISTRSQIVVLANSLCKALREKLEIGGQERFMFVLRT
ETKEYFFAAETDEIRRNWIKELKDAARKDAGRMLHTTKGRSMAFRRRN*

mRNA from alignment at NODE_649_length_20269_cov_4.054118:71..2017+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9801.t1 ID=Gcaud9801.t1|Name=Gcaud9801.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at NODE_649_length_20269_cov_4.054118:71..2017+ (Gracilaria caudata M_176_S67 male)
ATGACCGCCGTGCCGTCCGAGCAGTCCGCGCTGCCGAAGCAATGGGCCGA
TGAGATGGCCTTGGCGTCCTCCACTCTCTCCTCGTCCGCCTCTCTGCCCA
AGTCGCCGCCCGATACGCTTGGCGCCCGCGTGTTCGACTCCCAGCTTGAC
GGCTTTCTGCACCGCTTTCAACACCAGATCCTCGCCGCGCGCGCGCTCAA
GGACGATCTTGATCGCTTTGCGTCGCACGACGACCCGCTGTACCAGCTCA
AAAAGCGCAACTTCAAGCTCAAGATGGAGCATATTCGCTCGCTCTTCGCC
ACCGAAGGCGAGCACTTTGTTAGCAGTCTGGAGCGCACCAACCCAAAGCT
CACCATCGCCGCGTGCGGCCAGAACACCATAGAGCTTGCGCAGGGCATTG
AGAGGCTGCAGAGCGCCGTCGACGAAGAGCAGAGCAAACGCGCCGCTGCC
GCCACTGCCTCGGTCACTGCCTCTGCTGCCGCCTCTGCCGCCCCGCGCCC
CACTCGCACCCCCACTCCCCCACCCCCCGCTCTCGCCGCAATCACCCCAC
TCTCCTCCCCGGACCGCCCCACGCACAACGTCGTGTCCGCACATCCGGCC
TCCACCGTCGGCCACACGCTCAACAACCTCAGCTCCGAGGAGACGCTGCA
GCTCATGCAGAGCGACATCCAGGCGCTCAAACTGGAGCTCATGCGTCTGC
ACCGCGTCAAGGCCACCGCCTCGCCCAACAACGGTCTGCCGCCGCCATAC
GCCCCCCCGAGCGCGGCGTCGTCGCGTCCCGACACCCCGGCGCTCACCTC
CTCCACCGTGTCGCCCGACGCAAAGGGCTCCAACGCCCCGCCCATCCCGG
CGTCCATTCTGGCCAACAACAACGTCAGCGTGGTGCGCGTCACGGGCAGA
TCCACTGCACCCAACTATGTGTCGCATCTTGAGCAGATGAAGACGCGTCT
GGAGGCGTTGGAAAAGAAGCCACTCTCGCGTCGAGCCAAGTCTGCCGCCC
GTCTGGGCCGCACGCAGACCATGAGCTCCATGTACGAGACACGCGCCGGC
GATGAGAACCAGAACCCCAACGTGTCTGCAATGGTCACGCCGCCCAGGGG
CGTGCGACGTCAGCACCGCTCTGTGTCCACCACTTCTCCACCGGTGGCAG
CTTCGAGAAAGCCGCTTACTCCGCCGCCGCTAGAACAGTTCCGCTCCGAG
GTCTCGCCGCATACCACGCCGTCGCCGGTGCGTCTGGGAAGGGAGCGCAC
GTCGGCAAGTCCGGCCAGGTTGTACTTTGACGCACCGGAGGATATGTTGT
CTCGGCCGCAGTCTCATGCGGCGGCTCGCGATATTCAGAGGTATAGTCTG
AAGGTATCTCGCCGATTCGGCCCGAGCGAAATGGAGATGCCGGCGGAGCC
GCGCGCCAAGTCGGCTGTGACTGTGTCGCCCAGTAGGCGGCGGGGTGCGA
TGCAGGAAGGTGGCAAGTCTGTGGGCAATGCCTTGGCAGAGGTGCCTGCG
CCGTTGGGACCGCCGTCCACGATTGACACCACGGGCAGCGGAGGACGTGT
GGTGGAGGAGATCGAGGGCGATATGTGGGTGAGAAAGGGAGTGGTGTGGA
AGCGGTGGAGAAGACGTTATGCGAGCATTGTGTCGCATCCGTTCTTTGGA
AAGGCCATTTGTCTGTTCAGCTACGACTCTGGTGGCGGGGTGATCAGTAC
CAGGAGCCAGATTGTGGTGTTGGCCAACTCACTTTGCAAGGCGTTGAGGG
AGAAGTTGGAGATTGGTGGACAGGAACGGTTTATGTTTGTGCTCAGGACG
GAGACGAAGGAGTACTTCTTCGCGGCGGAGACGGATGAAATTCGTAGGAA
CTGGATCAAGGAGTTGAAGGATGCGGCCAGAAAGGACGCTGGCAGGATGT
TGCACACAACCAAGGGGCGTTCCATGGCGTTCCGGAGACGTAACTGA

Coding sequence (CDS) from alignment at NODE_649_length_20269_cov_4.054118:71..2017+

>Gcaud9801.t1 ID=Gcaud9801.t1|Name=Gcaud9801.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1947bp|location=Sequence derived from alignment at NODE_649_length_20269_cov_4.054118:71..2017+ (Gracilaria caudata M_176_S67 male)
ATGACCGCCGTGCCGTCCGAGCAGTCCGCGCTGCCGAAGCAATGGGCCGA
TGAGATGGCCTTGGCGTCCTCCACTCTCTCCTCGTCCGCCTCTCTGCCCA
AGTCGCCGCCCGATACGCTTGGCGCCCGCGTGTTCGACTCCCAGCTTGAC
GGCTTTCTGCACCGCTTTCAACACCAGATCCTCGCCGCGCGCGCGCTCAA
GGACGATCTTGATCGCTTTGCGTCGCACGACGACCCGCTGTACCAGCTCA
AAAAGCGCAACTTCAAGCTCAAGATGGAGCATATTCGCTCGCTCTTCGCC
ACCGAAGGCGAGCACTTTGTTAGCAGTCTGGAGCGCACCAACCCAAAGCT
CACCATCGCCGCGTGCGGCCAGAACACCATAGAGCTTGCGCAGGGCATTG
AGAGGCTGCAGAGCGCCGTCGACGAAGAGCAGAGCAAACGCGCCGCTGCC
GCCACTGCCTCGGTCACTGCCTCTGCTGCCGCCTCTGCCGCCCCGCGCCC
CACTCGCACCCCCACTCCCCCACCCCCCGCTCTCGCCGCAATCACCCCAC
TCTCCTCCCCGGACCGCCCCACGCACAACGTCGTGTCCGCACATCCGGCC
TCCACCGTCGGCCACACGCTCAACAACCTCAGCTCCGAGGAGACGCTGCA
GCTCATGCAGAGCGACATCCAGGCGCTCAAACTGGAGCTCATGCGTCTGC
ACCGCGTCAAGGCCACCGCCTCGCCCAACAACGGTCTGCCGCCGCCATAC
GCCCCCCCGAGCGCGGCGTCGTCGCGTCCCGACACCCCGGCGCTCACCTC
CTCCACCGTGTCGCCCGACGCAAAGGGCTCCAACGCCCCGCCCATCCCGG
CGTCCATTCTGGCCAACAACAACGTCAGCGTGGTGCGCGTCACGGGCAGA
TCCACTGCACCCAACTATGTGTCGCATCTTGAGCAGATGAAGACGCGTCT
GGAGGCGTTGGAAAAGAAGCCACTCTCGCGTCGAGCCAAGTCTGCCGCCC
GTCTGGGCCGCACGCAGACCATGAGCTCCATGTACGAGACACGCGCCGGC
GATGAGAACCAGAACCCCAACGTGTCTGCAATGGTCACGCCGCCCAGGGG
CGTGCGACGTCAGCACCGCTCTGTGTCCACCACTTCTCCACCGGTGGCAG
CTTCGAGAAAGCCGCTTACTCCGCCGCCGCTAGAACAGTTCCGCTCCGAG
GTCTCGCCGCATACCACGCCGTCGCCGGTGCGTCTGGGAAGGGAGCGCAC
GTCGGCAAGTCCGGCCAGGTTGTACTTTGACGCACCGGAGGATATGTTGT
CTCGGCCGCAGTCTCATGCGGCGGCTCGCGATATTCAGAGGTATAGTCTG
AAGGTATCTCGCCGATTCGGCCCGAGCGAAATGGAGATGCCGGCGGAGCC
GCGCGCCAAGTCGGCTGTGACTGTGTCGCCCAGTAGGCGGCGGGGTGCGA
TGCAGGAAGGTGGCAAGTCTGTGGGCAATGCCTTGGCAGAGGTGCCTGCG
CCGTTGGGACCGCCGTCCACGATTGACACCACGGGCAGCGGAGGACGTGT
GGTGGAGGAGATCGAGGGCGATATGTGGGTGAGAAAGGGAGTGGTGTGGA
AGCGGTGGAGAAGACGTTATGCGAGCATTGTGTCGCATCCGTTCTTTGGA
AAGGCCATTTGTCTGTTCAGCTACGACTCTGGTGGCGGGGTGATCAGTAC
CAGGAGCCAGATTGTGGTGTTGGCCAACTCACTTTGCAAGGCGTTGAGGG
AGAAGTTGGAGATTGGTGGACAGGAACGGTTTATGTTTGTGCTCAGGACG
GAGACGAAGGAGTACTTCTTCGCGGCGGAGACGGATGAAATTCGTAGGAA
CTGGATCAAGGAGTTGAAGGATGCGGCCAGAAAGGACGCTGGCAGGATGT
TGCACACAACCAAGGGGCGTTCCATGGCGTTCCGGAGACGTAACTGA