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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud9790.t1.stop1 | Gcaud9790.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_278_length_32496_cov_4.509582 4263..4265 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud9790.t1.start1 | Gcaud9790.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_278_length_32496_cov_4.509582 5286..5288 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud9790.t1 ID=Gcaud9790.t1|Name=Gcaud9790.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=272bp
MTRSARLFRRVASPTCTASNGENGESEDMWQQALQELFLETLRTYYQTTP
MLTDGEFQTLRDELEHLGKNQIRLDRMEKVWVQATSSRDFDRRVREEFEI
SEEELRALKTKLLKAGIVQRPVPSARVTPHHDEHDEEDELRVLEGRSGKC
CDARRIDADARMDERLKWFIFTDATEERFKIMLLYLPAVLMSFVTASVFT
ILFALLDGEMRITVTAAGRFRLGILSYVVVLMTVWFSNQVTPVMLDYLDL
GQPSLLRGECPPSKQKYEAPD* back to topspliced messenger RNA >Gcaud9790.t1 ID=Gcaud9790.t1|Name=Gcaud9790.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=816bp|location=Sequence derived from alignment at NODE_278_length_32496_cov_4.509582:4263..5288- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGACCAGGTCTGCGAGATTATTTCGTCGAGTGGCCTCGCCGACCTGCAC
CGCTTCAAACGGCGAAAACGGCGAATCGGAAGACATGTGGCAACAAGCAC
TGCAAGAACTCTTCCTAGAAACGCTTCGCACCTATTATCAGACCACTCCC
ATGTTAACAGACGGCGAGTTCCAAACGCTCCGCGACGAGCTGGAGCATCT
TGGTAAAAATCAGATTCGCCTAGACCGCATGGAGAAGGTGTGGGTGCAGG
CTACGAGCTCGAGGGACTTTGACAGACGCGTCAGAGAGGAATTTGAAATT
TCTGAAGAGGAGTTGAGGGCGTTAAAAACAAAGCTGTTGAAAGCGGGCAT
CGTTCAACGTCCAGTTCCGTCGGCACGTGTTACACCGCACCATGATGAAC
ATGATGAGGAGGATGAGTTGCGTGTCCTTGAAGGCCGCTCCGGCAAATGT
TGTGACGCTCGTCGCATTGACGCTGACGCTAGAATGGATGAGAGGTTGAA
ATGGTTTATTTTCACCGACGCTACCGAAGAACGGTTCAAAATCATGTTGC
TTTATCTGCCAGCAGTGTTAATGTCTTTTGTCACAGCGTCCGTGTTCACC
ATTCTATTCGCGTTACTAGACGGCGAGATGCGCATCACCGTGACGGCCGC
TGGGCGCTTCCGGTTAGGAATCCTGTCGTACGTGGTGGTGTTAATGACGG
TATGGTTTTCCAACCAGGTGACACCCGTCATGTTAGATTACTTGGATCTC
GGTCAACCAAGCCTACTTCGTGGTGAATGTCCGCCTTCTAAGCAGAAGTA
CGAGGCTCCGGACTGA back to topprotein sequence of Gcaud9790.t1 >Gcaud9790.t1 ID=Gcaud9790.t1|Name=Gcaud9790.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=272bp
MTRSARLFRRVASPTCTASNGENGESEDMWQQALQELFLETLRTYYQTTP
MLTDGEFQTLRDELEHLGKNQIRLDRMEKVWVQATSSRDFDRRVREEFEI
SEEELRALKTKLLKAGIVQRPVPSARVTPHHDEHDEEDELRVLEGRSGKC
CDARRIDADARMDERLKWFIFTDATEERFKIMLLYLPAVLMSFVTASVFT
ILFALLDGEMRITVTAAGRFRLGILSYVVVLMTVWFSNQVTPVMLDYLDL
GQPSLLRGECPPSKQKYEAPD* back to topmRNA from alignment at NODE_278_length_32496_cov_4.509582:4263..5288- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud9790.t1 ID=Gcaud9790.t1|Name=Gcaud9790.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at NODE_278_length_32496_cov_4.509582:4263..5288- (Gracilaria caudata M_176_S67 male)
ATGACCAGGTCTGCGAGATTATTTCGTCGAGTGGCCTCGCCGACCTGCAC
CGCTTCAAACGGCGAAAACGGCGAATCGGAAGACATGTGGCAACAAGCAC
TGCAAGAACTCTTCCTAGAAACGCTTCGCACCTATTATCAGACCACTCCC
ATGTTAACAGACGGCGAGTTCCAAACGCTCCGCGACGAGCTGGAGCATCT
TGGTAAAAATCAGATTCGCCTAGACCGCATGGAGAAGGTGTGGGTGCAGG
CTACGAGCTCGAGGGACTTTGACAGACGCGTCAGAGAGGAATTTGAAATT
TCTGAAGAGGAGTTGAGGGCGTTAAAAACAAAGCTGTTGAAAGCGGGCAT
CGTTCAACGTCCAGTTCCGTCGGCACGTGTTACACCGCACCATGATGAAC
ATGATGAGGAGGATGAGTTGCGTGTCCTTGAAGGCCGCTCCGGCAAATGT
TGTGACGCTCGTCGCATTGACGCTGACGCTAGAATGGATGAGAGGTTGAA
ATGGTTCGTAACACAGAGCACTTCTACACGATGCGCGTGATGACACGCTT
CTGACAAACCCCCTTCCTCATGTTTCCTACACAGGTTTATTTTCACCGAC
GCTACCGAAGAACGGTTCAAAATCATGTTGCTTTATCTGCCAGCAGTGTT
AATGTCTTTTGTCACAGCGTCCGTGTTCACCATTCTATTCGCGTTACTAG
ACGGCGAGATGCGCATCACCGTGACGGCCGCTGGGCGCTTCCGGTTAGGA
ATCCTGTCGTACGTGGTGGTGTTAATGACGGTATGGTTTTCCAACCAGGT
GACACCCGTCATGTTAGATTACTTGGATCTCGGTCAACCAAGCCTACTTC
GTGGTGAATGTCCGGTATGTGAGGCGCCTATCTCGTGTTTGTTCACGGGC
GCCGCCAGAAATCGAGACGAGAGGGTTTGTAATATGTGCGGCTGTACGAT
TGGGTTTAATCGGCGGTGGTCTAAGATCTATATCGTTTCACAGCCTTCTA
AGCAGAAGTACGAGGCTCCGGACTGA back to topCoding sequence (CDS) from alignment at NODE_278_length_32496_cov_4.509582:4263..5288- >Gcaud9790.t1 ID=Gcaud9790.t1|Name=Gcaud9790.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=816bp|location=Sequence derived from alignment at NODE_278_length_32496_cov_4.509582:4263..5288- (Gracilaria caudata M_176_S67 male)
ATGACCAGGTCTGCGAGATTATTTCGTCGAGTGGCCTCGCCGACCTGCAC
CGCTTCAAACGGCGAAAACGGCGAATCGGAAGACATGTGGCAACAAGCAC
TGCAAGAACTCTTCCTAGAAACGCTTCGCACCTATTATCAGACCACTCCC
ATGTTAACAGACGGCGAGTTCCAAACGCTCCGCGACGAGCTGGAGCATCT
TGGTAAAAATCAGATTCGCCTAGACCGCATGGAGAAGGTGTGGGTGCAGG
CTACGAGCTCGAGGGACTTTGACAGACGCGTCAGAGAGGAATTTGAAATT
TCTGAAGAGGAGTTGAGGGCGTTAAAAACAAAGCTGTTGAAAGCGGGCAT
CGTTCAACGTCCAGTTCCGTCGGCACGTGTTACACCGCACCATGATGAAC
ATGATGAGGAGGATGAGTTGCGTGTCCTTGAAGGCCGCTCCGGCAAATGT
TGTGACGCTCGTCGCATTGACGCTGACGCTAGAATGGATGAGAGGTTGAA
ATGGTTTATTTTCACCGACGCTACCGAAGAACGGTTCAAAATCATGTTGC
TTTATCTGCCAGCAGTGTTAATGTCTTTTGTCACAGCGTCCGTGTTCACC
ATTCTATTCGCGTTACTAGACGGCGAGATGCGCATCACCGTGACGGCCGC
TGGGCGCTTCCGGTTAGGAATCCTGTCGTACGTGGTGGTGTTAATGACGG
TATGGTTTTCCAACCAGGTGACACCCGTCATGTTAGATTACTTGGATCTC
GGTCAACCAAGCCTACTTCGTGGTGAATGTCCGCCTTCTAAGCAGAAGTA
CGAGGCTCCGGACTGA back to top
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