Gcaud9708.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9708.t1
Unique Name	Gcaud9708.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	304

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_743_length_18853_cov_4.482944	contig	NODE_743_length_18853_cov_4.482944:3116..4168 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX51022
PFAMs	Cons_hypoth95
Max annot lvl	2759\|Eukaryota
Evalue	6.44e-73
EggNOG OGs	COG0742@1\|root,2QSWU@2759\|Eukaryota
Description	Conserved hypothetical protein 95
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9708	Gcaud9708	Gracilaria caudata M_176_S67 male	gene	NODE_743_length_18853_cov_4.482944 3116..4168 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9708.t1	Gcaud9708.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_743_length_18853_cov_4.482944 3116..4168 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9708.t1.start1	Gcaud9708.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_743_length_18853_cov_4.482944 3116..3118 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9708.t1.CDS1	Gcaud9708.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_743_length_18853_cov_4.482944 3116..3150 +
Gcaud9708.t1.CDS2	Gcaud9708.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_743_length_18853_cov_4.482944 3292..4168 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9708.t1.exon1	Gcaud9708.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_743_length_18853_cov_4.482944 3116..3150 +
Gcaud9708.t1.exon2	Gcaud9708.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_743_length_18853_cov_4.482944 3292..4168 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9708.t1.intron1	Gcaud9708.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_743_length_18853_cov_4.482944 3151..3291 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9708.t1.stop1	Gcaud9708.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_743_length_18853_cov_4.482944 4166..4168 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_743_length_18853_cov_4.482944:3116..4168+
coding sequence from alignment at NODE_743_length_18853_cov_4.482944:3116..4168+

mRNA sequence

>Gcaud9708.t1 ID=Gcaud9708.t1|Name=Gcaud9708.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=304bp
LGRYLVPEKTFINDKTGNPQTCPTTSAKTFRVKISAKRDVHVDRREEVQV
PVDDQLSPGKAYAPRQQRGGGRRFRGFVRSQGKKCLAERLPPNPPGLRVA
SGSVKGRRIRSPNVYLRPMMAKVREAVFSMLDMLDALPRDGTCLDLFAGC
GSVGIEALSRGMGKAIFVDYSRACVDSIKDNLANCSFSDRSLAVCSRVEE
FLRDGAKYNYGKPYALITITPPYEEVEYSKLMQTVAESDCVGEGTFVVVE
YPVELCTFPTSINNRLVGIRNRRYGRTVIAIYACQPHVDIELRPDEFINL
KRK*

spliced messenger RNA

>Gcaud9708.t1 ID=Gcaud9708.t1|Name=Gcaud9708.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=912bp|location=Sequence derived from alignment at NODE_743_length_18853_cov_4.482944:3116..4168+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGGCCGTTATCTAGTCCCCGAAAAGACCTTTATAAATGACAAAACAGG
GAACCCACAGACTTGCCCTACGACCTCAGCTAAAACCTTTCGAGTGAAGA
TATCAGCAAAACGGGATGTTCATGTTGACCGTCGAGAAGAAGTGCAAGTG
CCTGTTGATGACCAGTTGTCGCCTGGCAAAGCGTATGCTCCTCGTCAGCA
GAGAGGTGGGGGAAGACGCTTTCGCGGTTTCGTACGATCTCAGGGAAAGA
AATGTCTGGCGGAAAGGCTCCCACCTAATCCTCCAGGTTTGCGCGTTGCT
TCAGGATCGGTCAAAGGGCGACGAATTCGATCTCCGAATGTGTACCTTCG
CCCTATGATGGCTAAAGTGCGGGAAGCAGTTTTCTCTATGTTAGATATGC
TAGATGCTCTCCCAAGGGATGGAACGTGCTTGGACTTGTTCGCCGGCTGT
GGCAGTGTTGGAATTGAGGCCTTGTCGCGAGGAATGGGTAAAGCAATCTT
TGTGGATTATTCGCGAGCATGCGTTGATTCTATCAAGGACAACTTGGCGA
ACTGCAGCTTTAGTGACAGAAGCTTGGCAGTATGTTCTCGGGTGGAGGAG
TTTCTGAGAGATGGGGCGAAGTACAACTATGGTAAGCCCTATGCTTTAAT
CACAATTACACCACCATACGAAGAGGTAGAGTACTCAAAGCTGATGCAGA
CTGTGGCTGAATCTGATTGTGTGGGAGAAGGAACGTTTGTTGTAGTGGAG
TATCCGGTAGAGCTCTGCACTTTTCCAACAAGCATCAATAATCGGCTCGT
TGGAATCCGAAACCGCCGATACGGTCGAACTGTTATAGCAATTTACGCTT
GTCAACCGCATGTAGACATTGAGTTGCGACCCGATGAGTTCATCAATCTC
AAACGAAAGTAA

protein sequence of Gcaud9708.t1

>Gcaud9708.t1 ID=Gcaud9708.t1|Name=Gcaud9708.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=304bp
LGRYLVPEKTFINDKTGNPQTCPTTSAKTFRVKISAKRDVHVDRREEVQV
PVDDQLSPGKAYAPRQQRGGGRRFRGFVRSQGKKCLAERLPPNPPGLRVA
SGSVKGRRIRSPNVYLRPMMAKVREAVFSMLDMLDALPRDGTCLDLFAGC
GSVGIEALSRGMGKAIFVDYSRACVDSIKDNLANCSFSDRSLAVCSRVEE
FLRDGAKYNYGKPYALITITPPYEEVEYSKLMQTVAESDCVGEGTFVVVE
YPVELCTFPTSINNRLVGIRNRRYGRTVIAIYACQPHVDIELRPDEFINL
KRK*

mRNA from alignment at NODE_743_length_18853_cov_4.482944:3116..4168+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9708.t1 ID=Gcaud9708.t1|Name=Gcaud9708.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_743_length_18853_cov_4.482944:3116..4168+ (Gracilaria caudata M_176_S67 male)
CTGGGCCGTTATCTAGTCCCCGAAAAGACCTTTATGTGGGTTTCTCAGAC
TTGTTTTGTCTTTTTCTCACCTCTGGGTTCTGAAGGATAGAGGCTCCTTT
CGTGTTCTGTTTGTTGCTTTTGAGTGATTCTGATGGCGTTTGTAAATTCT
TTCCTGGGATCACACTTCAAATCTAGAAATGACAAAACAGGGAACCCACA
GACTTGCCCTACGACCTCAGCTAAAACCTTTCGAGTGAAGATATCAGCAA
AACGGGATGTTCATGTTGACCGTCGAGAAGAAGTGCAAGTGCCTGTTGAT
GACCAGTTGTCGCCTGGCAAAGCGTATGCTCCTCGTCAGCAGAGAGGTGG
GGGAAGACGCTTTCGCGGTTTCGTACGATCTCAGGGAAAGAAATGTCTGG
CGGAAAGGCTCCCACCTAATCCTCCAGGTTTGCGCGTTGCTTCAGGATCG
GTCAAAGGGCGACGAATTCGATCTCCGAATGTGTACCTTCGCCCTATGAT
GGCTAAAGTGCGGGAAGCAGTTTTCTCTATGTTAGATATGCTAGATGCTC
TCCCAAGGGATGGAACGTGCTTGGACTTGTTCGCCGGCTGTGGCAGTGTT
GGAATTGAGGCCTTGTCGCGAGGAATGGGTAAAGCAATCTTTGTGGATTA
TTCGCGAGCATGCGTTGATTCTATCAAGGACAACTTGGCGAACTGCAGCT
TTAGTGACAGAAGCTTGGCAGTATGTTCTCGGGTGGAGGAGTTTCTGAGA
GATGGGGCGAAGTACAACTATGGTAAGCCCTATGCTTTAATCACAATTAC
ACCACCATACGAAGAGGTAGAGTACTCAAAGCTGATGCAGACTGTGGCTG
AATCTGATTGTGTGGGAGAAGGAACGTTTGTTGTAGTGGAGTATCCGGTA
GAGCTCTGCACTTTTCCAACAAGCATCAATAATCGGCTCGTTGGAATCCG
AAACCGCCGATACGGTCGAACTGTTATAGCAATTTACGCTTGTCAACCGC
ATGTAGACATTGAGTTGCGACCCGATGAGTTCATCAATCTCAAACGAAAG
TAA

Coding sequence (CDS) from alignment at NODE_743_length_18853_cov_4.482944:3116..4168+

>Gcaud9708.t1 ID=Gcaud9708.t1|Name=Gcaud9708.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=912bp|location=Sequence derived from alignment at NODE_743_length_18853_cov_4.482944:3116..4168+ (Gracilaria caudata M_176_S67 male)
CTGGGCCGTTATCTAGTCCCCGAAAAGACCTTTATAAATGACAAAACAGG
GAACCCACAGACTTGCCCTACGACCTCAGCTAAAACCTTTCGAGTGAAGA
TATCAGCAAAACGGGATGTTCATGTTGACCGTCGAGAAGAAGTGCAAGTG
CCTGTTGATGACCAGTTGTCGCCTGGCAAAGCGTATGCTCCTCGTCAGCA
GAGAGGTGGGGGAAGACGCTTTCGCGGTTTCGTACGATCTCAGGGAAAGA
AATGTCTGGCGGAAAGGCTCCCACCTAATCCTCCAGGTTTGCGCGTTGCT
TCAGGATCGGTCAAAGGGCGACGAATTCGATCTCCGAATGTGTACCTTCG
CCCTATGATGGCTAAAGTGCGGGAAGCAGTTTTCTCTATGTTAGATATGC
TAGATGCTCTCCCAAGGGATGGAACGTGCTTGGACTTGTTCGCCGGCTGT
GGCAGTGTTGGAATTGAGGCCTTGTCGCGAGGAATGGGTAAAGCAATCTT
TGTGGATTATTCGCGAGCATGCGTTGATTCTATCAAGGACAACTTGGCGA
ACTGCAGCTTTAGTGACAGAAGCTTGGCAGTATGTTCTCGGGTGGAGGAG
TTTCTGAGAGATGGGGCGAAGTACAACTATGGTAAGCCCTATGCTTTAAT
CACAATTACACCACCATACGAAGAGGTAGAGTACTCAAAGCTGATGCAGA
CTGTGGCTGAATCTGATTGTGTGGGAGAAGGAACGTTTGTTGTAGTGGAG
TATCCGGTAGAGCTCTGCACTTTTCCAACAAGCATCAATAATCGGCTCGT
TGGAATCCGAAACCGCCGATACGGTCGAACTGTTATAGCAATTTACGCTT
GTCAACCGCATGTAGACATTGAGTTGCGACCCGATGAGTTCATCAATCTC
AAACGAAAGTAA