Gcaud970.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud970.t1
Unique NameGcaud970.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1981_length_7357_cov_4.652766contigNODE_1981_length_7357_cov_4.652766:6225..6947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud970Gcaud970Gracilaria caudata M_176_S67 malegeneNODE_1981_length_7357_cov_4.652766 6225..6947 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud970.t1.start1Gcaud970.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1981_length_7357_cov_4.652766 6225..6227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud970.t1.CDS1Gcaud970.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1981_length_7357_cov_4.652766 6225..6947 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud970.t1.exon1Gcaud970.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1981_length_7357_cov_4.652766 6225..6947 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud970.t1.stop1Gcaud970.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1981_length_7357_cov_4.652766 6945..6947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud970.t1Gcaud970.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1981_length_7357_cov_4.652766 6225..6947 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud970.t1 ID=Gcaud970.t1|Name=Gcaud970.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=241bp
MNVNVQKANVTDIAQLVLSGNAVARAMQSPVNSAEQSRITHPKGPLWIQR
LSYSQESGFETSGESWKVPTDVPFAEQVAYYRRIMKELDAPPKPKARKKR
YVRTRDAPLTLADLRGDVTGIISMKYDSRLVEISSSPSPAGVLLQAALDQ
LTRTSFSFRLVGVDRMIGDIPIDNVQTLGSFEEGVLDIGTTLIQNQEQFG
AEVDCRLTSAGSLQASAMLDNVPAGLMIRYVQAPVDIDGT*
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spliced messenger RNA

>Gcaud970.t1 ID=Gcaud970.t1|Name=Gcaud970.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=723bp|location=Sequence derived from alignment at NODE_1981_length_7357_cov_4.652766:6225..6947+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGTCAACGTTCAGAAAGCCAATGTTACGGATATTGCTCAGCTTGT
TCTTTCGGGAAATGCTGTGGCTCGCGCGATGCAATCCCCCGTGAACAGCG
CGGAGCAAAGTCGCATCACCCACCCAAAAGGACCTTTGTGGATCCAGAGG
TTGTCGTATTCCCAGGAGTCCGGGTTCGAAACATCTGGTGAATCTTGGAA
AGTTCCTACAGATGTTCCTTTCGCTGAACAAGTGGCGTACTATCGCCGGA
TTATGAAGGAACTGGATGCACCTCCAAAGCCAAAAGCTCGAAAGAAACGA
TATGTCAGAACTCGAGACGCCCCACTGACATTGGCTGACCTGCGCGGAGA
TGTGACAGGAATCATTTCTATGAAGTACGATTCGCGGCTGGTGGAAATCA
GTTCGAGCCCTTCGCCAGCGGGAGTACTACTCCAGGCCGCTCTTGATCAG
TTAACAAGGACGTCTTTCTCATTCAGACTGGTTGGCGTGGACCGGATGAT
TGGTGATATTCCGATTGACAACGTGCAGACGTTGGGATCGTTTGAGGAAG
GGGTACTGGACATTGGAACCACACTGATCCAAAATCAAGAACAGTTTGGA
GCTGAAGTAGATTGTCGACTAACAAGCGCTGGATCATTACAAGCTTCTGC
AATGCTGGACAATGTTCCGGCGGGCTTGATGATTCGATATGTCCAAGCGC
CCGTTGACATTGACGGGACGTGA
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protein sequence of Gcaud970.t1

>Gcaud970.t1 ID=Gcaud970.t1|Name=Gcaud970.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=241bp
MNVNVQKANVTDIAQLVLSGNAVARAMQSPVNSAEQSRITHPKGPLWIQR
LSYSQESGFETSGESWKVPTDVPFAEQVAYYRRIMKELDAPPKPKARKKR
YVRTRDAPLTLADLRGDVTGIISMKYDSRLVEISSSPSPAGVLLQAALDQ
LTRTSFSFRLVGVDRMIGDIPIDNVQTLGSFEEGVLDIGTTLIQNQEQFG
AEVDCRLTSAGSLQASAMLDNVPAGLMIRYVQAPVDIDGT*
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mRNA from alignment at NODE_1981_length_7357_cov_4.652766:6225..6947+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud970.t1 ID=Gcaud970.t1|Name=Gcaud970.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=723bp|location=Sequence derived from alignment at NODE_1981_length_7357_cov_4.652766:6225..6947+ (Gracilaria caudata M_176_S67 male)
ATGAACGTCAACGTTCAGAAAGCCAATGTTACGGATATTGCTCAGCTTGT
TCTTTCGGGAAATGCTGTGGCTCGCGCGATGCAATCCCCCGTGAACAGCG
CGGAGCAAAGTCGCATCACCCACCCAAAAGGACCTTTGTGGATCCAGAGG
TTGTCGTATTCCCAGGAGTCCGGGTTCGAAACATCTGGTGAATCTTGGAA
AGTTCCTACAGATGTTCCTTTCGCTGAACAAGTGGCGTACTATCGCCGGA
TTATGAAGGAACTGGATGCACCTCCAAAGCCAAAAGCTCGAAAGAAACGA
TATGTCAGAACTCGAGACGCCCCACTGACATTGGCTGACCTGCGCGGAGA
TGTGACAGGAATCATTTCTATGAAGTACGATTCGCGGCTGGTGGAAATCA
GTTCGAGCCCTTCGCCAGCGGGAGTACTACTCCAGGCCGCTCTTGATCAG
TTAACAAGGACGTCTTTCTCATTCAGACTGGTTGGCGTGGACCGGATGAT
TGGTGATATTCCGATTGACAACGTGCAGACGTTGGGATCGTTTGAGGAAG
GGGTACTGGACATTGGAACCACACTGATCCAAAATCAAGAACAGTTTGGA
GCTGAAGTAGATTGTCGACTAACAAGCGCTGGATCATTACAAGCTTCTGC
AATGCTGGACAATGTTCCGGCGGGCTTGATGATTCGATATGTCCAAGCGC
CCGTTGACATTGACGGGACGTGA
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Coding sequence (CDS) from alignment at NODE_1981_length_7357_cov_4.652766:6225..6947+

>Gcaud970.t1 ID=Gcaud970.t1|Name=Gcaud970.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=723bp|location=Sequence derived from alignment at NODE_1981_length_7357_cov_4.652766:6225..6947+ (Gracilaria caudata M_176_S67 male)
ATGAACGTCAACGTTCAGAAAGCCAATGTTACGGATATTGCTCAGCTTGT
TCTTTCGGGAAATGCTGTGGCTCGCGCGATGCAATCCCCCGTGAACAGCG
CGGAGCAAAGTCGCATCACCCACCCAAAAGGACCTTTGTGGATCCAGAGG
TTGTCGTATTCCCAGGAGTCCGGGTTCGAAACATCTGGTGAATCTTGGAA
AGTTCCTACAGATGTTCCTTTCGCTGAACAAGTGGCGTACTATCGCCGGA
TTATGAAGGAACTGGATGCACCTCCAAAGCCAAAAGCTCGAAAGAAACGA
TATGTCAGAACTCGAGACGCCCCACTGACATTGGCTGACCTGCGCGGAGA
TGTGACAGGAATCATTTCTATGAAGTACGATTCGCGGCTGGTGGAAATCA
GTTCGAGCCCTTCGCCAGCGGGAGTACTACTCCAGGCCGCTCTTGATCAG
TTAACAAGGACGTCTTTCTCATTCAGACTGGTTGGCGTGGACCGGATGAT
TGGTGATATTCCGATTGACAACGTGCAGACGTTGGGATCGTTTGAGGAAG
GGGTACTGGACATTGGAACCACACTGATCCAAAATCAAGAACAGTTTGGA
GCTGAAGTAGATTGTCGACTAACAAGCGCTGGATCATTACAAGCTTCTGC
AATGCTGGACAATGTTCCGGCGGGCTTGATGATTCGATATGTCCAAGCGC
CCGTTGACATTGACGGGACGTGA
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