Gcaud9650.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9650.t1
Unique Name	Gcaud9650.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	246

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3756_length_2982_cov_3.480802	contig	NODE_3756_length_2982_cov_3.480802:2..739 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMO319CT
PFAMs	DSPn
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06639
KEGG Pathway	ko04110,ko04111,ko04113,map04110,map04111,map04113
Evalue	8.94e-10
EggNOG OGs	COG2453@1\|root,KOG1720@2759\|Eukaryota
EC	3.1.3.16,3.1.3.48
Description	protein tyrosine/serine/threonine phosphatase activity
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9650	Gcaud9650	Gracilaria caudata M_176_S67 male	gene	NODE_3756_length_2982_cov_3.480802 2..739 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9650.t1.CDS1	Gcaud9650.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3756_length_2982_cov_3.480802 2..739 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9650.t1.exon1	Gcaud9650.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3756_length_2982_cov_3.480802 2..739 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9650.t1.start1	Gcaud9650.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3756_length_2982_cov_3.480802 737..739 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9650.t1	Gcaud9650.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3756_length_2982_cov_3.480802 2..739 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3756_length_2982_cov_3.480802:2..739-
coding sequence from alignment at NODE_3756_length_2982_cov_3.480802:2..739-

mRNA sequence

>Gcaud9650.t1 ID=Gcaud9650.t1|Name=Gcaud9650.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=246bp
MRRLYLSLLLEDLLSHVRHWYARDLHKPPLQNLCARLGHLRHVLRTRTSD
DSELRASIRHLLWLLRQALEAYDPPSYLRASLERARSASLDIPRRRNDAA
EVALLREQIALGMELSALRTLEQHVHILLTTNFPQEADALLSETQLACAL
LGKDDYRVRGKRRLVVALANLRATLCDRDGADSTCKTLQEMEHKLLGSFE
NDLKVKRPVGNAMLLRPGLHDIPNFDVVQEGFLRGGQPSSSGLQWL

spliced messenger RNA

>Gcaud9650.t1 ID=Gcaud9650.t1|Name=Gcaud9650.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=738bp|location=Sequence derived from alignment at NODE_3756_length_2982_cov_3.480802:2..739- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGCTTGTATTTGTCGTTGTTGCTGGAGGATTTGCTCAGTCACGT
TCGTCATTGGTACGCTCGTGACTTGCACAAGCCGCCGCTGCAGAACTTGT
GCGCGAGGCTGGGTCATTTGCGTCATGTGCTGCGTACAAGGACGTCGGAT
GATTCGGAGCTTCGTGCGTCCATTCGTCACTTGTTGTGGTTGTTGAGACA
GGCCTTGGAGGCTTATGACCCACCGTCTTATTTGCGCGCCAGTTTGGAAC
GCGCTCGATCCGCGTCGTTGGATATTCCGCGTCGCAGGAATGATGCGGCG
GAGGTGGCGCTGCTGCGAGAGCAGATTGCATTGGGAATGGAACTGTCCGC
ATTGCGAACGTTGGAGCAGCATGTACATATATTGCTTACCACAAACTTTC
CGCAAGAGGCGGATGCGTTGTTGAGCGAAACGCAACTGGCGTGTGCGTTG
CTTGGAAAGGATGATTATCGTGTGAGAGGGAAGCGTCGGTTAGTGGTGGC
GCTTGCTAATCTTCGCGCTACTCTTTGCGATCGAGACGGTGCGGACAGTA
CGTGTAAAACGCTGCAGGAGATGGAGCACAAGCTTCTCGGTTCTTTTGAA
AATGATCTCAAGGTGAAGAGACCGGTCGGTAATGCCATGTTGCTGCGTCC
TGGCTTGCATGACATCCCCAACTTTGACGTCGTTCAAGAGGGCTTTTTGA
GAGGCGGTCAGCCTTCTTCGTCTGGCTTGCAGTGGCTC

protein sequence of Gcaud9650.t1

>Gcaud9650.t1 ID=Gcaud9650.t1|Name=Gcaud9650.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=246bp
MRRLYLSLLLEDLLSHVRHWYARDLHKPPLQNLCARLGHLRHVLRTRTSD
DSELRASIRHLLWLLRQALEAYDPPSYLRASLERARSASLDIPRRRNDAA
EVALLREQIALGMELSALRTLEQHVHILLTTNFPQEADALLSETQLACAL
LGKDDYRVRGKRRLVVALANLRATLCDRDGADSTCKTLQEMEHKLLGSFE
NDLKVKRPVGNAMLLRPGLHDIPNFDVVQEGFLRGGQPSSSGLQWL

mRNA from alignment at NODE_3756_length_2982_cov_3.480802:2..739-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9650.t1 ID=Gcaud9650.t1|Name=Gcaud9650.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=738bp|location=Sequence derived from alignment at NODE_3756_length_2982_cov_3.480802:2..739- (Gracilaria caudata M_176_S67 male)
ATGAGGCGCTTGTATTTGTCGTTGTTGCTGGAGGATTTGCTCAGTCACGT
TCGTCATTGGTACGCTCGTGACTTGCACAAGCCGCCGCTGCAGAACTTGT
GCGCGAGGCTGGGTCATTTGCGTCATGTGCTGCGTACAAGGACGTCGGAT
GATTCGGAGCTTCGTGCGTCCATTCGTCACTTGTTGTGGTTGTTGAGACA
GGCCTTGGAGGCTTATGACCCACCGTCTTATTTGCGCGCCAGTTTGGAAC
GCGCTCGATCCGCGTCGTTGGATATTCCGCGTCGCAGGAATGATGCGGCG
GAGGTGGCGCTGCTGCGAGAGCAGATTGCATTGGGAATGGAACTGTCCGC
ATTGCGAACGTTGGAGCAGCATGTACATATATTGCTTACCACAAACTTTC
CGCAAGAGGCGGATGCGTTGTTGAGCGAAACGCAACTGGCGTGTGCGTTG
CTTGGAAAGGATGATTATCGTGTGAGAGGGAAGCGTCGGTTAGTGGTGGC
GCTTGCTAATCTTCGCGCTACTCTTTGCGATCGAGACGGTGCGGACAGTA
CGTGTAAAACGCTGCAGGAGATGGAGCACAAGCTTCTCGGTTCTTTTGAA
AATGATCTCAAGGTGAAGAGACCGGTCGGTAATGCCATGTTGCTGCGTCC
TGGCTTGCATGACATCCCCAACTTTGACGTCGTTCAAGAGGGCTTTTTGA
GAGGCGGTCAGCCTTCTTCGTCTGGCTTGCAGTGGCTC

Coding sequence (CDS) from alignment at NODE_3756_length_2982_cov_3.480802:2..739-

>Gcaud9650.t1 ID=Gcaud9650.t1|Name=Gcaud9650.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=738bp|location=Sequence derived from alignment at NODE_3756_length_2982_cov_3.480802:2..739- (Gracilaria caudata M_176_S67 male)
ATGAGGCGCTTGTATTTGTCGTTGTTGCTGGAGGATTTGCTCAGTCACGT
TCGTCATTGGTACGCTCGTGACTTGCACAAGCCGCCGCTGCAGAACTTGT
GCGCGAGGCTGGGTCATTTGCGTCATGTGCTGCGTACAAGGACGTCGGAT
GATTCGGAGCTTCGTGCGTCCATTCGTCACTTGTTGTGGTTGTTGAGACA
GGCCTTGGAGGCTTATGACCCACCGTCTTATTTGCGCGCCAGTTTGGAAC
GCGCTCGATCCGCGTCGTTGGATATTCCGCGTCGCAGGAATGATGCGGCG
GAGGTGGCGCTGCTGCGAGAGCAGATTGCATTGGGAATGGAACTGTCCGC
ATTGCGAACGTTGGAGCAGCATGTACATATATTGCTTACCACAAACTTTC
CGCAAGAGGCGGATGCGTTGTTGAGCGAAACGCAACTGGCGTGTGCGTTG
CTTGGAAAGGATGATTATCGTGTGAGAGGGAAGCGTCGGTTAGTGGTGGC
GCTTGCTAATCTTCGCGCTACTCTTTGCGATCGAGACGGTGCGGACAGTA
CGTGTAAAACGCTGCAGGAGATGGAGCACAAGCTTCTCGGTTCTTTTGAA
AATGATCTCAAGGTGAAGAGACCGGTCGGTAATGCCATGTTGCTGCGTCC
TGGCTTGCATGACATCCCCAACTTTGACGTCGTTCAAGAGGGCTTTTTGA
GAGGCGGTCAGCCTTCTTCGTCTGGCTTGCAGTGGCTC