Gcaud9645.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9645.t1
Unique Name	Gcaud9645.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	257

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_493_length_23805_cov_4.148056	contig	NODE_493_length_23805_cov_4.148056:20993..21763 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	582515.KR51_00027470
Preferred name	lepB
PFAMs	Peptidase_S24,Peptidase_S26
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03100
KEGG Pathway	ko02024,ko03060,map02024,map03060
Evalue	2.89e-28
EggNOG OGs	COG0681@1\|root,COG0681@2\|Bacteria,1G519@1117\|Cyanobacteria
EC	3.4.21.89
Description	Belongs to the peptidase S26 family
COG category	U
BRITE	ko00000,ko00001,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9645	Gcaud9645	Gracilaria caudata M_176_S67 male	gene	NODE_493_length_23805_cov_4.148056 20993..21763 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9645.t1.start1	Gcaud9645.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_493_length_23805_cov_4.148056 20993..20995 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9645.t1.CDS1	Gcaud9645.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_493_length_23805_cov_4.148056 20993..21763 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9645.t1.exon1	Gcaud9645.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_493_length_23805_cov_4.148056 20993..21763 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9645.t1.stop1	Gcaud9645.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_493_length_23805_cov_4.148056 21761..21763 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9645.t1	Gcaud9645.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_493_length_23805_cov_4.148056 20993..21763 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_493_length_23805_cov_4.148056:20993..21763+
coding sequence from alignment at NODE_493_length_23805_cov_4.148056:20993..21763+

mRNA sequence

>Gcaud9645.t1 ID=Gcaud9645.t1|Name=Gcaud9645.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=257bp
MRRRGVYRSVEYVVEKLSLDEREIVSTAAVSPSRRHEIVASVHPLNRLLP
RFERRWPVDVALGDAVLWTYKRDLIRCALVTAAMSVSFVVLGLLGPSVLG
IYSIPTVSMEPSLHVGDALLVEKLSLRATPPRKGEIVLFTPPSRLRHILM
SSVQRESSSRMPHRNDLFVKRVVAVPGDVIEVRVTGVFVNGRKVDDSVPD
SPVVAPRNIPEGFVFVVGDNARQSLDSRYWGLLPIDCVVGRPVACIFPPQ
RLHMPV*

spliced messenger RNA

>Gcaud9645.t1 ID=Gcaud9645.t1|Name=Gcaud9645.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=771bp|location=Sequence derived from alignment at NODE_493_length_23805_cov_4.148056:20993..21763+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGCAGGGGCGTGTACCGTTCGGTGGAGTACGTGGTGGAGAAACT
GTCGCTCGATGAGCGCGAGATCGTTTCCACTGCTGCTGTGTCTCCGTCGC
GACGACATGAGATAGTGGCGTCGGTGCATCCGCTCAACCGGTTGTTGCCG
CGCTTCGAGCGTCGCTGGCCGGTGGACGTGGCGCTGGGTGACGCGGTGCT
GTGGACGTACAAACGGGATCTCATTCGATGTGCGCTTGTGACTGCTGCCA
TGTCGGTTTCGTTTGTGGTGCTGGGGCTTTTGGGCCCCTCTGTGTTGGGC
ATTTACTCCATCCCCACGGTGTCGATGGAGCCTTCTTTGCACGTGGGCGA
TGCGCTGTTGGTTGAGAAGCTTTCCCTGCGCGCCACGCCGCCGCGAAAGG
GAGAGATAGTTTTGTTCACACCGCCGTCAAGACTGCGGCATATTCTGATG
TCGTCCGTGCAACGAGAGTCGTCCTCGCGCATGCCGCATCGCAATGATCT
GTTCGTGAAACGAGTGGTGGCGGTTCCAGGCGACGTGATTGAGGTGCGTG
TGACTGGCGTGTTTGTGAATGGTCGAAAAGTGGACGACAGTGTGCCGGAC
AGCCCTGTTGTGGCGCCGCGCAACATTCCGGAGGGGTTTGTGTTTGTGGT
GGGTGATAACGCTAGGCAGAGTCTTGACTCCAGGTACTGGGGCCTTCTTC
CCATCGACTGCGTTGTGGGCCGGCCCGTGGCGTGCATCTTCCCGCCGCAG
AGATTGCACATGCCGGTGTAG

protein sequence of Gcaud9645.t1

>Gcaud9645.t1 ID=Gcaud9645.t1|Name=Gcaud9645.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=257bp
MRRRGVYRSVEYVVEKLSLDEREIVSTAAVSPSRRHEIVASVHPLNRLLP
RFERRWPVDVALGDAVLWTYKRDLIRCALVTAAMSVSFVVLGLLGPSVLG
IYSIPTVSMEPSLHVGDALLVEKLSLRATPPRKGEIVLFTPPSRLRHILM
SSVQRESSSRMPHRNDLFVKRVVAVPGDVIEVRVTGVFVNGRKVDDSVPD
SPVVAPRNIPEGFVFVVGDNARQSLDSRYWGLLPIDCVVGRPVACIFPPQ
RLHMPV*

mRNA from alignment at NODE_493_length_23805_cov_4.148056:20993..21763+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9645.t1 ID=Gcaud9645.t1|Name=Gcaud9645.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=771bp|location=Sequence derived from alignment at NODE_493_length_23805_cov_4.148056:20993..21763+ (Gracilaria caudata M_176_S67 male)
ATGCGCCGCAGGGGCGTGTACCGTTCGGTGGAGTACGTGGTGGAGAAACT
GTCGCTCGATGAGCGCGAGATCGTTTCCACTGCTGCTGTGTCTCCGTCGC
GACGACATGAGATAGTGGCGTCGGTGCATCCGCTCAACCGGTTGTTGCCG
CGCTTCGAGCGTCGCTGGCCGGTGGACGTGGCGCTGGGTGACGCGGTGCT
GTGGACGTACAAACGGGATCTCATTCGATGTGCGCTTGTGACTGCTGCCA
TGTCGGTTTCGTTTGTGGTGCTGGGGCTTTTGGGCCCCTCTGTGTTGGGC
ATTTACTCCATCCCCACGGTGTCGATGGAGCCTTCTTTGCACGTGGGCGA
TGCGCTGTTGGTTGAGAAGCTTTCCCTGCGCGCCACGCCGCCGCGAAAGG
GAGAGATAGTTTTGTTCACACCGCCGTCAAGACTGCGGCATATTCTGATG
TCGTCCGTGCAACGAGAGTCGTCCTCGCGCATGCCGCATCGCAATGATCT
GTTCGTGAAACGAGTGGTGGCGGTTCCAGGCGACGTGATTGAGGTGCGTG
TGACTGGCGTGTTTGTGAATGGTCGAAAAGTGGACGACAGTGTGCCGGAC
AGCCCTGTTGTGGCGCCGCGCAACATTCCGGAGGGGTTTGTGTTTGTGGT
GGGTGATAACGCTAGGCAGAGTCTTGACTCCAGGTACTGGGGCCTTCTTC
CCATCGACTGCGTTGTGGGCCGGCCCGTGGCGTGCATCTTCCCGCCGCAG
AGATTGCACATGCCGGTGTAG

Coding sequence (CDS) from alignment at NODE_493_length_23805_cov_4.148056:20993..21763+

>Gcaud9645.t1 ID=Gcaud9645.t1|Name=Gcaud9645.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=771bp|location=Sequence derived from alignment at NODE_493_length_23805_cov_4.148056:20993..21763+ (Gracilaria caudata M_176_S67 male)
ATGCGCCGCAGGGGCGTGTACCGTTCGGTGGAGTACGTGGTGGAGAAACT
GTCGCTCGATGAGCGCGAGATCGTTTCCACTGCTGCTGTGTCTCCGTCGC
GACGACATGAGATAGTGGCGTCGGTGCATCCGCTCAACCGGTTGTTGCCG
CGCTTCGAGCGTCGCTGGCCGGTGGACGTGGCGCTGGGTGACGCGGTGCT
GTGGACGTACAAACGGGATCTCATTCGATGTGCGCTTGTGACTGCTGCCA
TGTCGGTTTCGTTTGTGGTGCTGGGGCTTTTGGGCCCCTCTGTGTTGGGC
ATTTACTCCATCCCCACGGTGTCGATGGAGCCTTCTTTGCACGTGGGCGA
TGCGCTGTTGGTTGAGAAGCTTTCCCTGCGCGCCACGCCGCCGCGAAAGG
GAGAGATAGTTTTGTTCACACCGCCGTCAAGACTGCGGCATATTCTGATG
TCGTCCGTGCAACGAGAGTCGTCCTCGCGCATGCCGCATCGCAATGATCT
GTTCGTGAAACGAGTGGTGGCGGTTCCAGGCGACGTGATTGAGGTGCGTG
TGACTGGCGTGTTTGTGAATGGTCGAAAAGTGGACGACAGTGTGCCGGAC
AGCCCTGTTGTGGCGCCGCGCAACATTCCGGAGGGGTTTGTGTTTGTGGT
GGGTGATAACGCTAGGCAGAGTCTTGACTCCAGGTACTGGGGCCTTCTTC
CCATCGACTGCGTTGTGGGCCGGCCCGTGGCGTGCATCTTCCCGCCGCAG
AGATTGCACATGCCGGTGTAG