Gcaud9643.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9643.t2
Unique Name	Gcaud9643.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	574

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_493_length_23805_cov_4.148056	contig	NODE_493_length_23805_cov_4.148056:8539..10260 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4081.Solyc11g066790.1.1
PFAMs	HIRAN,Helicase_C,SNF2_N,zf-C3HC4_2,zf-C3HC4_3
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15505
GOs	GO:0000724,GO:0000725,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009292,GO:0009294,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044764,GO:0045003,GO:0046483,GO:0050896,GO:0051704,GO:0051716,GO:0071704,GO:0090304,GO:1901360
Evalue	1.96e-136
EggNOG OGs	COG0553@1\|root,KOG1001@2759\|Eukaryota,37IVF@33090\|Viridiplantae,3GE5V@35493\|Streptophyta,44C9N@71274\|asterids
Description	Prokaryotic RING finger family 4
COG category	KL
BRITE	ko00000,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9643	Gcaud9643	Gracilaria caudata M_176_S67 male	gene	NODE_493_length_23805_cov_4.148056 8539..12564 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9643.t2.stop1	Gcaud9643.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_493_length_23805_cov_4.148056 8539..8541 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9643.t2.CDS1	Gcaud9643.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_493_length_23805_cov_4.148056 8539..10260 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9643.t2.exon1	Gcaud9643.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_493_length_23805_cov_4.148056 8539..10260 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9643.t2.start1	Gcaud9643.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_493_length_23805_cov_4.148056 10258..10260 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9643.t2	Gcaud9643.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_493_length_23805_cov_4.148056 8539..10260 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_493_length_23805_cov_4.148056:8539..10260-
coding sequence from alignment at NODE_493_length_23805_cov_4.148056:8539..10260-

mRNA sequence

>Gcaud9643.t2 ID=Gcaud9643.t2|Name=Gcaud9643.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=574bp
MASAAKKKASLGGTLIVCPTSLVTQWINQLDQHVIPNFLRVTTHYGQGRG
DARSISLLGADVVVTSYGTLAAECSENTSNGEEIGPRDGPLFQLQWRRII
LDEAHTIKSRVTKWAKASYKIRAERHWCVTGTVIHNHVNDVFSLLHFLDV
KPWSSWAFWNRVIVSNLESNDMARQKTAMSLIRDIISSVTLRRKKTTKDS
HGKCIVQLTKKTVDLVELTPSSQERDFYSAIHQRSKLQFDTYLAQDKVMH
NYASVLELLLRLRQACDHPYLVFAAAPSKDSVVMKDRDKLFRRFMEAGSS
AEYVEKVFKDAESGAIGEAPCPLCLDIIDDPVAPKECGHPACRICMMESL
KRANKCPVCRIPITRESVATLPRKNRFSVDLSRKWRSSAKIDELLKDVRI
RQELREASKGKGIGKTVIFSQFTSMLDLVGTALDRENFRWLRIDGSVPQA
QRALILDKFEKESELSSDCSNILLVSLRAGGVGLNLVAASFAILLDIHWN
PQVDAQAQDRIHRHGQTRDVLVKRYIIKDTVEEKLLQVQSRKQSIADGAL
EVATDEDRKEAKLSELKLLFSTS*

spliced messenger RNA

>Gcaud9643.t2 ID=Gcaud9643.t2|Name=Gcaud9643.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1722bp|location=Sequence derived from alignment at NODE_493_length_23805_cov_4.148056:8539..10260- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCTGCTGCGAAAAAGAAGGCTTCACTTGGAGGAACGCTCATTGT
GTGCCCGACATCGCTTGTAACACAATGGATTAACCAACTAGACCAGCACG
TAATCCCTAACTTTCTGCGGGTGACAACTCACTATGGACAAGGGCGCGGC
GACGCTCGCTCTATTTCACTTCTTGGCGCTGATGTCGTTGTGACGTCGTA
CGGTACGCTTGCCGCCGAATGTTCGGAGAACACTTCGAATGGGGAGGAGA
TTGGTCCGAGAGATGGACCTCTCTTTCAGCTTCAATGGCGTCGCATTATC
CTGGACGAAGCTCATACCATCAAAAGCCGGGTGACCAAATGGGCAAAGGC
CTCATACAAAATCAGAGCAGAAAGGCACTGGTGCGTCACAGGAACAGTGA
TCCACAATCACGTGAACGACGTATTCAGTTTGCTCCACTTTTTAGATGTG
AAGCCGTGGTCGTCATGGGCGTTTTGGAATCGCGTGATTGTATCAAACTT
GGAGTCGAACGACATGGCTCGGCAGAAGACGGCAATGTCTTTGATTCGAG
ATATCATATCTTCGGTTACACTAAGACGGAAGAAGACTACGAAGGATTCG
CATGGAAAATGTATTGTTCAACTGACGAAAAAGACGGTGGACCTTGTGGA
ATTGACACCTTCATCGCAGGAGAGAGACTTCTACTCTGCCATCCACCAAC
GATCGAAGCTCCAATTTGACACCTATCTAGCCCAGGACAAGGTGATGCAT
AACTACGCATCTGTTCTTGAGCTATTGTTGCGGCTCCGACAAGCTTGTGA
TCATCCGTACCTTGTTTTTGCCGCAGCTCCAAGCAAGGACTCTGTCGTGA
TGAAGGACAGGGATAAACTTTTCAGAAGGTTCATGGAAGCTGGGTCTTCA
GCCGAGTATGTTGAAAAAGTTTTCAAGGATGCAGAATCGGGAGCGATAGG
AGAAGCACCGTGTCCGCTATGTCTTGATATTATTGATGATCCTGTGGCTC
CCAAAGAATGTGGACATCCGGCATGTCGTATTTGCATGATGGAGTCTCTG
AAGAGGGCCAACAAGTGCCCAGTGTGCCGAATTCCTATCACTCGCGAGAG
CGTGGCTACGTTACCCCGGAAGAACAGGTTCTCTGTTGACTTGAGTAGGA
AGTGGCGTTCCAGCGCGAAGATTGATGAACTGCTGAAAGATGTTCGAATA
CGACAAGAGCTTAGAGAAGCAAGTAAGGGAAAAGGAATCGGGAAAACCGT
CATCTTCTCACAGTTCACCAGTATGCTGGACCTTGTGGGAACCGCACTCG
ATCGCGAAAACTTTCGTTGGTTGCGGATTGATGGCTCCGTCCCTCAAGCA
CAACGCGCTCTTATTCTTGACAAGTTCGAGAAAGAAAGTGAACTATCGAG
CGACTGTTCGAACATTCTGCTGGTATCGCTCCGTGCTGGGGGTGTAGGTT
TGAATCTTGTAGCGGCGTCGTTTGCTATATTATTGGACATTCACTGGAAC
CCCCAAGTGGATGCACAGGCTCAAGATCGAATTCATCGTCACGGACAGAC
CCGAGATGTTTTAGTTAAAAGGTACATTATCAAGGACACTGTGGAGGAGA
AGCTTCTACAGGTACAATCCAGGAAACAGAGCATAGCCGACGGTGCTCTT
GAAGTCGCAACAGATGAGGACAGAAAGGAAGCCAAGCTGTCAGAGCTGAA
GCTTCTGTTTTCTACTTCATAG

protein sequence of Gcaud9643.t2

>Gcaud9643.t2 ID=Gcaud9643.t2|Name=Gcaud9643.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=574bp
MASAAKKKASLGGTLIVCPTSLVTQWINQLDQHVIPNFLRVTTHYGQGRG
DARSISLLGADVVVTSYGTLAAECSENTSNGEEIGPRDGPLFQLQWRRII
LDEAHTIKSRVTKWAKASYKIRAERHWCVTGTVIHNHVNDVFSLLHFLDV
KPWSSWAFWNRVIVSNLESNDMARQKTAMSLIRDIISSVTLRRKKTTKDS
HGKCIVQLTKKTVDLVELTPSSQERDFYSAIHQRSKLQFDTYLAQDKVMH
NYASVLELLLRLRQACDHPYLVFAAAPSKDSVVMKDRDKLFRRFMEAGSS
AEYVEKVFKDAESGAIGEAPCPLCLDIIDDPVAPKECGHPACRICMMESL
KRANKCPVCRIPITRESVATLPRKNRFSVDLSRKWRSSAKIDELLKDVRI
RQELREASKGKGIGKTVIFSQFTSMLDLVGTALDRENFRWLRIDGSVPQA
QRALILDKFEKESELSSDCSNILLVSLRAGGVGLNLVAASFAILLDIHWN
PQVDAQAQDRIHRHGQTRDVLVKRYIIKDTVEEKLLQVQSRKQSIADGAL
EVATDEDRKEAKLSELKLLFSTS*

mRNA from alignment at NODE_493_length_23805_cov_4.148056:8539..10260-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9643.t2 ID=Gcaud9643.t2|Name=Gcaud9643.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1722bp|location=Sequence derived from alignment at NODE_493_length_23805_cov_4.148056:8539..10260- (Gracilaria caudata M_176_S67 male)
ATGGCATCTGCTGCGAAAAAGAAGGCTTCACTTGGAGGAACGCTCATTGT
GTGCCCGACATCGCTTGTAACACAATGGATTAACCAACTAGACCAGCACG
TAATCCCTAACTTTCTGCGGGTGACAACTCACTATGGACAAGGGCGCGGC
GACGCTCGCTCTATTTCACTTCTTGGCGCTGATGTCGTTGTGACGTCGTA
CGGTACGCTTGCCGCCGAATGTTCGGAGAACACTTCGAATGGGGAGGAGA
TTGGTCCGAGAGATGGACCTCTCTTTCAGCTTCAATGGCGTCGCATTATC
CTGGACGAAGCTCATACCATCAAAAGCCGGGTGACCAAATGGGCAAAGGC
CTCATACAAAATCAGAGCAGAAAGGCACTGGTGCGTCACAGGAACAGTGA
TCCACAATCACGTGAACGACGTATTCAGTTTGCTCCACTTTTTAGATGTG
AAGCCGTGGTCGTCATGGGCGTTTTGGAATCGCGTGATTGTATCAAACTT
GGAGTCGAACGACATGGCTCGGCAGAAGACGGCAATGTCTTTGATTCGAG
ATATCATATCTTCGGTTACACTAAGACGGAAGAAGACTACGAAGGATTCG
CATGGAAAATGTATTGTTCAACTGACGAAAAAGACGGTGGACCTTGTGGA
ATTGACACCTTCATCGCAGGAGAGAGACTTCTACTCTGCCATCCACCAAC
GATCGAAGCTCCAATTTGACACCTATCTAGCCCAGGACAAGGTGATGCAT
AACTACGCATCTGTTCTTGAGCTATTGTTGCGGCTCCGACAAGCTTGTGA
TCATCCGTACCTTGTTTTTGCCGCAGCTCCAAGCAAGGACTCTGTCGTGA
TGAAGGACAGGGATAAACTTTTCAGAAGGTTCATGGAAGCTGGGTCTTCA
GCCGAGTATGTTGAAAAAGTTTTCAAGGATGCAGAATCGGGAGCGATAGG
AGAAGCACCGTGTCCGCTATGTCTTGATATTATTGATGATCCTGTGGCTC
CCAAAGAATGTGGACATCCGGCATGTCGTATTTGCATGATGGAGTCTCTG
AAGAGGGCCAACAAGTGCCCAGTGTGCCGAATTCCTATCACTCGCGAGAG
CGTGGCTACGTTACCCCGGAAGAACAGGTTCTCTGTTGACTTGAGTAGGA
AGTGGCGTTCCAGCGCGAAGATTGATGAACTGCTGAAAGATGTTCGAATA
CGACAAGAGCTTAGAGAAGCAAGTAAGGGAAAAGGAATCGGGAAAACCGT
CATCTTCTCACAGTTCACCAGTATGCTGGACCTTGTGGGAACCGCACTCG
ATCGCGAAAACTTTCGTTGGTTGCGGATTGATGGCTCCGTCCCTCAAGCA
CAACGCGCTCTTATTCTTGACAAGTTCGAGAAAGAAAGTGAACTATCGAG
CGACTGTTCGAACATTCTGCTGGTATCGCTCCGTGCTGGGGGTGTAGGTT
TGAATCTTGTAGCGGCGTCGTTTGCTATATTATTGGACATTCACTGGAAC
CCCCAAGTGGATGCACAGGCTCAAGATCGAATTCATCGTCACGGACAGAC
CCGAGATGTTTTAGTTAAAAGGTACATTATCAAGGACACTGTGGAGGAGA
AGCTTCTACAGGTACAATCCAGGAAACAGAGCATAGCCGACGGTGCTCTT
GAAGTCGCAACAGATGAGGACAGAAAGGAAGCCAAGCTGTCAGAGCTGAA
GCTTCTGTTTTCTACTTCATAG

Coding sequence (CDS) from alignment at NODE_493_length_23805_cov_4.148056:8539..10260-

>Gcaud9643.t2 ID=Gcaud9643.t2|Name=Gcaud9643.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1722bp|location=Sequence derived from alignment at NODE_493_length_23805_cov_4.148056:8539..10260- (Gracilaria caudata M_176_S67 male)
ATGGCATCTGCTGCGAAAAAGAAGGCTTCACTTGGAGGAACGCTCATTGT
GTGCCCGACATCGCTTGTAACACAATGGATTAACCAACTAGACCAGCACG
TAATCCCTAACTTTCTGCGGGTGACAACTCACTATGGACAAGGGCGCGGC
GACGCTCGCTCTATTTCACTTCTTGGCGCTGATGTCGTTGTGACGTCGTA
CGGTACGCTTGCCGCCGAATGTTCGGAGAACACTTCGAATGGGGAGGAGA
TTGGTCCGAGAGATGGACCTCTCTTTCAGCTTCAATGGCGTCGCATTATC
CTGGACGAAGCTCATACCATCAAAAGCCGGGTGACCAAATGGGCAAAGGC
CTCATACAAAATCAGAGCAGAAAGGCACTGGTGCGTCACAGGAACAGTGA
TCCACAATCACGTGAACGACGTATTCAGTTTGCTCCACTTTTTAGATGTG
AAGCCGTGGTCGTCATGGGCGTTTTGGAATCGCGTGATTGTATCAAACTT
GGAGTCGAACGACATGGCTCGGCAGAAGACGGCAATGTCTTTGATTCGAG
ATATCATATCTTCGGTTACACTAAGACGGAAGAAGACTACGAAGGATTCG
CATGGAAAATGTATTGTTCAACTGACGAAAAAGACGGTGGACCTTGTGGA
ATTGACACCTTCATCGCAGGAGAGAGACTTCTACTCTGCCATCCACCAAC
GATCGAAGCTCCAATTTGACACCTATCTAGCCCAGGACAAGGTGATGCAT
AACTACGCATCTGTTCTTGAGCTATTGTTGCGGCTCCGACAAGCTTGTGA
TCATCCGTACCTTGTTTTTGCCGCAGCTCCAAGCAAGGACTCTGTCGTGA
TGAAGGACAGGGATAAACTTTTCAGAAGGTTCATGGAAGCTGGGTCTTCA
GCCGAGTATGTTGAAAAAGTTTTCAAGGATGCAGAATCGGGAGCGATAGG
AGAAGCACCGTGTCCGCTATGTCTTGATATTATTGATGATCCTGTGGCTC
CCAAAGAATGTGGACATCCGGCATGTCGTATTTGCATGATGGAGTCTCTG
AAGAGGGCCAACAAGTGCCCAGTGTGCCGAATTCCTATCACTCGCGAGAG
CGTGGCTACGTTACCCCGGAAGAACAGGTTCTCTGTTGACTTGAGTAGGA
AGTGGCGTTCCAGCGCGAAGATTGATGAACTGCTGAAAGATGTTCGAATA
CGACAAGAGCTTAGAGAAGCAAGTAAGGGAAAAGGAATCGGGAAAACCGT
CATCTTCTCACAGTTCACCAGTATGCTGGACCTTGTGGGAACCGCACTCG
ATCGCGAAAACTTTCGTTGGTTGCGGATTGATGGCTCCGTCCCTCAAGCA
CAACGCGCTCTTATTCTTGACAAGTTCGAGAAAGAAAGTGAACTATCGAG
CGACTGTTCGAACATTCTGCTGGTATCGCTCCGTGCTGGGGGTGTAGGTT
TGAATCTTGTAGCGGCGTCGTTTGCTATATTATTGGACATTCACTGGAAC
CCCCAAGTGGATGCACAGGCTCAAGATCGAATTCATCGTCACGGACAGAC
CCGAGATGTTTTAGTTAAAAGGTACATTATCAAGGACACTGTGGAGGAGA
AGCTTCTACAGGTACAATCCAGGAAACAGAGCATAGCCGACGGTGCTCTT
GAAGTCGCAACAGATGAGGACAGAAAGGAAGCCAAGCTGTCAGAGCTGAA
GCTTCTGTTTTCTACTTCATAG