Gcaud9641.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9641.t1
Unique NameGcaud9641.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length261
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_493_length_23805_cov_4.148056contigNODE_493_length_23805_cov_4.148056:2202..2982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9641Gcaud9641Gracilaria caudata M_176_S67 malegeneNODE_493_length_23805_cov_4.148056 2202..2982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9641.t1.CDS1Gcaud9641.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_493_length_23805_cov_4.148056 2202..2982 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9641.t1.exon1Gcaud9641.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_493_length_23805_cov_4.148056 2202..2982 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9641.t1.start1Gcaud9641.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_493_length_23805_cov_4.148056 2980..2982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9641.t1Gcaud9641.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_493_length_23805_cov_4.148056 2202..2982 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9641.t1 ID=Gcaud9641.t1|Name=Gcaud9641.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=261bp
MQPYVVQDYPQPGDPYPSQPPAAPYQQPQQQQPPAASYQQPAPAAPYHPE
PAAAPESAPEPHDARPSAAAPQSPYNEPYAAEPPQPPYASYAAPYGAPPA
PAPYAPQYGAPPPMPYAPAPMVYGAPAVAPFYPPMPYMARPMMQLGHLAD
LPAHEIVSPSELAVVIPAHDKLVDDPDLMYLLEKANKYSGLDGVQQSRHK
YAKYTFLAGFVLAKRGLPPQSVPDDPDDVYVKLLNLYASNPTRMGPDPEV
LLIRTLAKSRX
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spliced messenger RNA

>Gcaud9641.t1 ID=Gcaud9641.t1|Name=Gcaud9641.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=781bp|location=Sequence derived from alignment at NODE_493_length_23805_cov_4.148056:2202..2982- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCGTACGTCGTGCAAGACTATCCGCAACCCGGCGATCCCTACCC
GTCGCAACCGCCCGCCGCCCCCTACCAACAGCCGCAGCAGCAACAACCAC
CCGCCGCCTCCTATCAACAGCCCGCACCCGCCGCGCCCTACCATCCCGAA
CCCGCCGCCGCCCCCGAGTCCGCGCCAGAGCCGCACGACGCGCGTCCGTC
CGCCGCCGCGCCACAATCGCCGTACAACGAGCCGTACGCCGCCGAACCGC
CGCAACCGCCGTACGCATCGTACGCTGCTCCGTACGGCGCGCCACCTGCG
CCCGCGCCGTACGCGCCGCAGTATGGTGCTCCGCCGCCCATGCCGTACGC
GCCGGCGCCGATGGTGTACGGAGCGCCCGCTGTGGCGCCGTTCTATCCGC
CCATGCCGTACATGGCACGCCCGATGATGCAGCTAGGTCATTTGGCCGAT
TTGCCTGCGCATGAGATTGTGTCGCCGTCGGAATTGGCCGTGGTCATTCC
GGCGCATGATAAGCTTGTGGATGACCCGGATTTGATGTACTTGTTGGAGA
AGGCTAACAAGTATAGTGGCTTGGATGGCGTGCAACAAAGTCGTCACAAG
TATGCGAAGTATACGTTTTTGGCGGGCTTTGTGTTGGCCAAACGTGGATT
GCCGCCGCAGTCGGTGCCGGATGATCCGGATGACGTGTATGTGAAGCTGC
TCAATCTGTATGCGTCTAATCCCACGCGTATGGGACCTGATCCAGAGGTG
TTGCTAATCCGCACTTTGGCAAAGAGTCGTC
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protein sequence of Gcaud9641.t1

>Gcaud9641.t1 ID=Gcaud9641.t1|Name=Gcaud9641.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=261bp
MQPYVVQDYPQPGDPYPSQPPAAPYQQPQQQQPPAASYQQPAPAAPYHPE
PAAAPESAPEPHDARPSAAAPQSPYNEPYAAEPPQPPYASYAAPYGAPPA
PAPYAPQYGAPPPMPYAPAPMVYGAPAVAPFYPPMPYMARPMMQLGHLAD
LPAHEIVSPSELAVVIPAHDKLVDDPDLMYLLEKANKYSGLDGVQQSRHK
YAKYTFLAGFVLAKRGLPPQSVPDDPDDVYVKLLNLYASNPTRMGPDPEV
LLIRTLAKSRX
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mRNA from alignment at NODE_493_length_23805_cov_4.148056:2202..2982-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9641.t1 ID=Gcaud9641.t1|Name=Gcaud9641.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=781bp|location=Sequence derived from alignment at NODE_493_length_23805_cov_4.148056:2202..2982- (Gracilaria caudata M_176_S67 male)
ATGCAGCCGTACGTCGTGCAAGACTATCCGCAACCCGGCGATCCCTACCC
GTCGCAACCGCCCGCCGCCCCCTACCAACAGCCGCAGCAGCAACAACCAC
CCGCCGCCTCCTATCAACAGCCCGCACCCGCCGCGCCCTACCATCCCGAA
CCCGCCGCCGCCCCCGAGTCCGCGCCAGAGCCGCACGACGCGCGTCCGTC
CGCCGCCGCGCCACAATCGCCGTACAACGAGCCGTACGCCGCCGAACCGC
CGCAACCGCCGTACGCATCGTACGCTGCTCCGTACGGCGCGCCACCTGCG
CCCGCGCCGTACGCGCCGCAGTATGGTGCTCCGCCGCCCATGCCGTACGC
GCCGGCGCCGATGGTGTACGGAGCGCCCGCTGTGGCGCCGTTCTATCCGC
CCATGCCGTACATGGCACGCCCGATGATGCAGCTAGGTCATTTGGCCGAT
TTGCCTGCGCATGAGATTGTGTCGCCGTCGGAATTGGCCGTGGTCATTCC
GGCGCATGATAAGCTTGTGGATGACCCGGATTTGATGTACTTGTTGGAGA
AGGCTAACAAGTATAGTGGCTTGGATGGCGTGCAACAAAGTCGTCACAAG
TATGCGAAGTATACGTTTTTGGCGGGCTTTGTGTTGGCCAAACGTGGATT
GCCGCCGCAGTCGGTGCCGGATGATCCGGATGACGTGTATGTGAAGCTGC
TCAATCTGTATGCGTCTAATCCCACGCGTATGGGACCTGATCCAGAGGTG
TTGCTAATCCGCACTTTGGCAAAGAGTCGTC
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Coding sequence (CDS) from alignment at NODE_493_length_23805_cov_4.148056:2202..2982-

>Gcaud9641.t1 ID=Gcaud9641.t1|Name=Gcaud9641.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=781bp|location=Sequence derived from alignment at NODE_493_length_23805_cov_4.148056:2202..2982- (Gracilaria caudata M_176_S67 male)
ATGCAGCCGTACGTCGTGCAAGACTATCCGCAACCCGGCGATCCCTACCC
GTCGCAACCGCCCGCCGCCCCCTACCAACAGCCGCAGCAGCAACAACCAC
CCGCCGCCTCCTATCAACAGCCCGCACCCGCCGCGCCCTACCATCCCGAA
CCCGCCGCCGCCCCCGAGTCCGCGCCAGAGCCGCACGACGCGCGTCCGTC
CGCCGCCGCGCCACAATCGCCGTACAACGAGCCGTACGCCGCCGAACCGC
CGCAACCGCCGTACGCATCGTACGCTGCTCCGTACGGCGCGCCACCTGCG
CCCGCGCCGTACGCGCCGCAGTATGGTGCTCCGCCGCCCATGCCGTACGC
GCCGGCGCCGATGGTGTACGGAGCGCCCGCTGTGGCGCCGTTCTATCCGC
CCATGCCGTACATGGCACGCCCGATGATGCAGCTAGGTCATTTGGCCGAT
TTGCCTGCGCATGAGATTGTGTCGCCGTCGGAATTGGCCGTGGTCATTCC
GGCGCATGATAAGCTTGTGGATGACCCGGATTTGATGTACTTGTTGGAGA
AGGCTAACAAGTATAGTGGCTTGGATGGCGTGCAACAAAGTCGTCACAAG
TATGCGAAGTATACGTTTTTGGCGGGCTTTGTGTTGGCCAAACGTGGATT
GCCGCCGCAGTCGGTGCCGGATGATCCGGATGACGTGTATGTGAAGCTGC
TCAATCTGTATGCGTCTAATCCCACGCGTATGGGACCTGATCCAGAGGTG
TTGCTAATCCGCACTTTGGCAAAGAGTCGTC
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