Gcaud9598.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9598.t1
Unique NameGcaud9598.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length662
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_586_length_21355_cov_4.545758contigNODE_586_length_21355_cov_4.545758:4250..6668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX33144
PFAMsABC_tran,ABC_tran_Xtn
Max annot lvl2759|Eukaryota
Evalue1.19e-213
EggNOG OGsCOG0488@1|root,KOG0927@2759|Eukaryota
DescriptionATPase activity
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9598Gcaud9598Gracilaria caudata M_176_S67 malegeneNODE_586_length_21355_cov_4.545758 4250..6668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9598.t1Gcaud9598.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_586_length_21355_cov_4.545758 4250..6668 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9598.t1.stop1Gcaud9598.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_586_length_21355_cov_4.545758 4250..4252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9598.t1.CDS1Gcaud9598.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_586_length_21355_cov_4.545758 4250..4518 -
Gcaud9598.t1.CDS2Gcaud9598.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_586_length_21355_cov_4.545758 4626..4869 -
Gcaud9598.t1.CDS3Gcaud9598.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_586_length_21355_cov_4.545758 4999..5066 -
Gcaud9598.t1.CDS4Gcaud9598.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_586_length_21355_cov_4.545758 5149..5155 -
Gcaud9598.t1.CDS5Gcaud9598.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_586_length_21355_cov_4.545758 5271..6668 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9598.t1.exon1Gcaud9598.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_586_length_21355_cov_4.545758 4250..4518 -
Gcaud9598.t1.exon2Gcaud9598.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_586_length_21355_cov_4.545758 4626..4869 -
Gcaud9598.t1.exon3Gcaud9598.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_586_length_21355_cov_4.545758 4999..5066 -
Gcaud9598.t1.exon4Gcaud9598.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_586_length_21355_cov_4.545758 5149..5155 -
Gcaud9598.t1.exon5Gcaud9598.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_586_length_21355_cov_4.545758 5271..6668 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9598.t1.intron1Gcaud9598.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_586_length_21355_cov_4.545758 4519..4625 -
Gcaud9598.t1.intron2Gcaud9598.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_586_length_21355_cov_4.545758 4870..4998 -
Gcaud9598.t1.intron3Gcaud9598.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_586_length_21355_cov_4.545758 5067..5148 -
Gcaud9598.t1.intron4Gcaud9598.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_586_length_21355_cov_4.545758 5156..5270 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9598.t1.start1Gcaud9598.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_586_length_21355_cov_4.545758 6666..6668 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9598.t1 ID=Gcaud9598.t1|Name=Gcaud9598.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=662bp
MADSHPSFASQMAFLPSCPLIKSRAHFPLSKCSSRINGHESTSQTAVRGR
PGMTPVMGLNAKNLAKNKKKGGKKKGRSAGTATAQNGTPPRAKANTIDTN
RREYIYQMAGVSKTLDNGKQILKNVNLAYFPGVKIGVVGSNGSGKSSLLK
IIAGLDSEYDGIAAPQRGIKIGYLAQEPVLEEETVEGNIAKAVSESRSWL
DRYAELGSMIGEEGLEDAAREKITKEWESLQNKIEASNAWELDRNIDRAR
EALRCPPGDARVETLSGGEKRRVALCALLLTRPDLLILDEPTNHLDALSV
LWLERFLETYKGTVICVTHDRFFLEALTDWILEIDNGQAFPYEGNYSTYL
EKKAKRMEQEEKVASSRQKLIRHELEWIRSSPKGQQAKSKARISRYESLL
EEDAKASRQSVLDRMYIPPGPKLGDIVVEAEGVRKGFGENVLFENMSFSL
PRGGIVGVIGPNGAGKTTLLRMIMGEESPDAGVFKVGDSVVPMYADQSRA
SVDRQKSVFETVSEGNDELQLGSRSVRSRAYLSWFNFKGGDQQKPVDALS
GGELNRLALAQVVKGGGNVLLGDELTNDADAFLIRSLEEALLSFVGCAVI
VSHDIAFLNRVATHILAFEGDLVPGQVTFFEGNFSAYLEDKRKRFGETTP
SRMKFAKLPAV*
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spliced messenger RNA

>Gcaud9598.t1 ID=Gcaud9598.t1|Name=Gcaud9598.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1986bp|location=Sequence derived from alignment at NODE_586_length_21355_cov_4.545758:4250..6668- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGATTCTCATCCGTCGTTTGCGAGCCAAATGGCGTTTCTTCCGTC
CTGTCCGCTCATCAAGTCACGAGCTCATTTCCCTCTATCCAAATGCTCTA
GTCGTATCAACGGCCACGAAAGCACCAGTCAAACGGCAGTTCGAGGCAGG
CCAGGCATGACGCCAGTGATGGGTCTGAACGCTAAGAACCTGGCCAAGAA
CAAGAAGAAAGGTGGTAAGAAGAAGGGCCGTTCCGCAGGCACTGCCACGG
CTCAGAATGGCACGCCACCCAGAGCAAAGGCTAATACAATCGATACCAAT
CGCCGAGAATACATTTACCAAATGGCTGGAGTGAGCAAAACACTCGACAA
CGGAAAACAGATTCTCAAGAACGTCAATTTGGCATACTTTCCTGGTGTCA
AGATAGGAGTGGTCGGTAGCAATGGCTCTGGGAAGAGCTCTCTGCTCAAA
ATCATCGCCGGACTCGATTCTGAATACGACGGAATAGCCGCACCGCAAAG
AGGCATCAAGATTGGCTACCTAGCCCAGGAACCCGTTCTTGAAGAGGAGA
CTGTGGAAGGGAACATTGCAAAGGCTGTGAGTGAATCACGCTCTTGGTTA
GACCGATATGCAGAGCTTGGAAGCATGATAGGCGAGGAAGGTTTAGAAGA
TGCCGCACGCGAGAAGATCACCAAGGAATGGGAATCCTTGCAAAACAAGA
TTGAAGCCTCGAATGCGTGGGAGCTTGATCGCAATATTGACAGAGCGCGC
GAGGCATTGAGATGCCCTCCCGGTGATGCTCGTGTGGAAACCCTAAGCGG
AGGGGAAAAGCGTCGAGTTGCGTTGTGTGCGCTTTTGCTTACGAGACCGG
ATCTGTTGATTCTTGATGAACCTACTAATCACCTGGATGCTCTATCTGTT
CTTTGGCTTGAGAGATTCTTAGAAACGTACAAGGGCACCGTGATTTGCGT
GACCCACGATCGCTTTTTCCTTGAGGCTCTCACAGATTGGATTTTGGAGA
TCGATAACGGTCAAGCATTCCCATATGAAGGGAACTATTCCACGTATCTC
GAGAAGAAGGCGAAGAGAATGGAACAAGAAGAAAAGGTGGCGTCTAGTCG
GCAGAAACTTATTCGGCACGAGCTCGAATGGATTCGATCAAGTCCAAAGG
GGCAACAAGCCAAATCTAAGGCCAGAATCTCTCGATACGAAAGTCTACTC
GAAGAAGACGCCAAAGCAAGCAGGCAGTCAGTGCTCGATCGCATGTACAT
CCCACCGGGTCCTAAGCTGGGAGACATTGTAGTAGAAGCCGAAGGTGTTC
GAAAGGGCTTTGGTGAGAATGTTCTCTTCGAAAACATGTCGTTCAGCTTA
CCGCGAGGTGGGATTGTTGGTGTCATAGGACCGAATGGAGCTGGAAAGAC
CACACTATTGCGAATGATCATGGGGGAGGAGAGTCCTGATGCTGGAGTGT
TCAAAGTCGGAGATTCTGTAGTCCCAATGTATGCAGATCAGAGTCGAGCC
TCAGTCGACAGACAAAAGTCGGTCTTCGAGACGGTGTCTGAAGGCAATGA
TGAACTGCAGTTGGGAAGTAGATCTGTGAGATCAAGAGCATATCTTTCGT
GGTTCAACTTCAAAGGAGGTGACCAACAAAAGCCCGTTGATGCCCTCAGT
GGTGGTGAACTTAACCGGCTAGCTCTAGCCCAAGTTGTGAAAGGCGGCGG
CAATGTGCTGCTTGGAGATGAGCTAACAAATGACGCCGATGCGTTTTTGA
TCCGGAGCCTGGAAGAAGCTTTGCTGTCTTTTGTTGGATGTGCGGTTATT
GTATCACATGATATCGCGTTTTTGAACAGAGTGGCGACTCATATTCTTGC
ATTCGAAGGAGACCTTGTTCCAGGTCAGGTGACATTTTTCGAAGGAAACT
TTTCAGCTTATCTGGAGGACAAACGTAAGAGATTTGGCGAGACAACCCCT
TCTCGAATGAAATTTGCGAAGCTACCCGCTGTTTAA
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protein sequence of Gcaud9598.t1

>Gcaud9598.t1 ID=Gcaud9598.t1|Name=Gcaud9598.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=662bp
MADSHPSFASQMAFLPSCPLIKSRAHFPLSKCSSRINGHESTSQTAVRGR
PGMTPVMGLNAKNLAKNKKKGGKKKGRSAGTATAQNGTPPRAKANTIDTN
RREYIYQMAGVSKTLDNGKQILKNVNLAYFPGVKIGVVGSNGSGKSSLLK
IIAGLDSEYDGIAAPQRGIKIGYLAQEPVLEEETVEGNIAKAVSESRSWL
DRYAELGSMIGEEGLEDAAREKITKEWESLQNKIEASNAWELDRNIDRAR
EALRCPPGDARVETLSGGEKRRVALCALLLTRPDLLILDEPTNHLDALSV
LWLERFLETYKGTVICVTHDRFFLEALTDWILEIDNGQAFPYEGNYSTYL
EKKAKRMEQEEKVASSRQKLIRHELEWIRSSPKGQQAKSKARISRYESLL
EEDAKASRQSVLDRMYIPPGPKLGDIVVEAEGVRKGFGENVLFENMSFSL
PRGGIVGVIGPNGAGKTTLLRMIMGEESPDAGVFKVGDSVVPMYADQSRA
SVDRQKSVFETVSEGNDELQLGSRSVRSRAYLSWFNFKGGDQQKPVDALS
GGELNRLALAQVVKGGGNVLLGDELTNDADAFLIRSLEEALLSFVGCAVI
VSHDIAFLNRVATHILAFEGDLVPGQVTFFEGNFSAYLEDKRKRFGETTP
SRMKFAKLPAV*
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mRNA from alignment at NODE_586_length_21355_cov_4.545758:4250..6668-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9598.t1 ID=Gcaud9598.t1|Name=Gcaud9598.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2419bp|location=Sequence derived from alignment at NODE_586_length_21355_cov_4.545758:4250..6668- (Gracilaria caudata M_176_S67 male)
ATGGCAGATTCTCATCCGTCGTTTGCGAGCCAAATGGCGTTTCTTCCGTC
CTGTCCGCTCATCAAGTCACGAGCTCATTTCCCTCTATCCAAATGCTCTA
GTCGTATCAACGGCCACGAAAGCACCAGTCAAACGGCAGTTCGAGGCAGG
CCAGGCATGACGCCAGTGATGGGTCTGAACGCTAAGAACCTGGCCAAGAA
CAAGAAGAAAGGTGGTAAGAAGAAGGGCCGTTCCGCAGGCACTGCCACGG
CTCAGAATGGCACGCCACCCAGAGCAAAGGCTAATACAATCGATACCAAT
CGCCGAGAATACATTTACCAAATGGCTGGAGTGAGCAAAACACTCGACAA
CGGAAAACAGATTCTCAAGAACGTCAATTTGGCATACTTTCCTGGTGTCA
AGATAGGAGTGGTCGGTAGCAATGGCTCTGGGAAGAGCTCTCTGCTCAAA
ATCATCGCCGGACTCGATTCTGAATACGACGGAATAGCCGCACCGCAAAG
AGGCATCAAGATTGGCTACCTAGCCCAGGAACCCGTTCTTGAAGAGGAGA
CTGTGGAAGGGAACATTGCAAAGGCTGTGAGTGAATCACGCTCTTGGTTA
GACCGATATGCAGAGCTTGGAAGCATGATAGGCGAGGAAGGTTTAGAAGA
TGCCGCACGCGAGAAGATCACCAAGGAATGGGAATCCTTGCAAAACAAGA
TTGAAGCCTCGAATGCGTGGGAGCTTGATCGCAATATTGACAGAGCGCGC
GAGGCATTGAGATGCCCTCCCGGTGATGCTCGTGTGGAAACCCTAAGCGG
AGGGGAAAAGCGTCGAGTTGCGTTGTGTGCGCTTTTGCTTACGAGACCGG
ATCTGTTGATTCTTGATGAACCTACTAATCACCTGGATGCTCTATCTGTT
CTTTGGCTTGAGAGATTCTTAGAAACGTACAAGGGCACCGTGATTTGCGT
GACCCACGATCGCTTTTTCCTTGAGGCTCTCACAGATTGGATTTTGGAGA
TCGATAACGGTCAAGCATTCCCATATGAAGGGAACTATTCCACGTATCTC
GAGAAGAAGGCGAAGAGAATGGAACAAGAAGAAAAGGTGGCGTCTAGTCG
GCAGAAACTTATTCGGCACGAGCTCGAATGGATTCGATCAAGTCCAAAGG
GGCAACAAGCCAAATCTAAGGCCAGAATCTCTCGATACGAAAGTCTACTC
GAAGAAGACGCCAAAGCAAGCAGGCAGTCAGTGCTCGATCGCATGTACAT
CCCACCGGGTCCTAAGCTGGGAGACATTGTAGTAGAAGCCGAAGGTGTTC
GAAAGGGCTTTGGTGAGAATGTTCTCTTCGAAAACATGTCGTTCAGCTTA
CCGCGAGGTGGGATTGTTGGTGTCATAGGACCGAATGGAGCTGGAAAGGT
AAGGTTGGCCACATCTAGGCACTGGCACACTGTAGCCTATTGAAGGAAGA
ACTCAAGTTACTGACGATGTTGCCCATTCAATTTCTTTTTTCTTGCCGAC
GATGGAAACACAGACCACACGTACGTTGAAGTTCCCAAATGAAACCTTGC
CTTGCTTTGGTGAAGGTCATACCGACAATGTTACTGACATCTCAATGCGT
AGTATTGCGAATGATCATGGGGGAGGAGAGTCCTGATGCTGGAGTGTTCA
AAGTCGGAGATTCTGTAGTCGTAAGTCCATGCTTAATCTGTCATCATGTG
TGAACTCACTACAGAAAGGAAGCATCAGCGCACTAACTTTTGATATTACA
CGTATCGGTACCCCTAATGATACTCTGACAACGTTTGTGCGTTTCAAAGC
CAATGTATGCAGATCAGAGTCGAGCCTCAGTCGACAGACAAAAGTCGGTC
TTCGAGACGGTGTCTGAAGGCAATGATGAACTGCAGTTGGGAAGTAGATC
TGTGAGATCAAGAGCATATCTTTCGTGGTTCAACTTCAAAGGAGGTGACC
AACAAAAGCCCGTTGATGCCCTCAGTGGTGGTGAACTTAACCGGCTAGCT
CTAGCCCAAGTTGTGAAAGGCGGCGGCAATGTGCTGCTTGGAGGTAAGTA
TGGTCCCAATTCGAAACACCGAACCCGAGCATATTCGAACAAAACGGACT
GATTCTAATACTATACTTTGTTATGTACTTGAAAATCTTATCGATCCCAG
ATGAGCTAACAAATGACGCCGATGCGTTTTTGATCCGGAGCCTGGAAGAA
GCTTTGCTGTCTTTTGTTGGATGTGCGGTTATTGTATCACATGATATCGC
GTTTTTGAACAGAGTGGCGACTCATATTCTTGCATTCGAAGGAGACCTTG
TTCCAGGTCAGGTGACATTTTTCGAAGGAAACTTTTCAGCTTATCTGGAG
GACAAACGTAAGAGATTTGGCGAGACAACCCCTTCTCGAATGAAATTTGC
GAAGCTACCCGCTGTTTAA
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Coding sequence (CDS) from alignment at NODE_586_length_21355_cov_4.545758:4250..6668-

>Gcaud9598.t1 ID=Gcaud9598.t1|Name=Gcaud9598.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1986bp|location=Sequence derived from alignment at NODE_586_length_21355_cov_4.545758:4250..6668- (Gracilaria caudata M_176_S67 male)
ATGGCAGATTCTCATCCGTCGTTTGCGAGCCAAATGGCGTTTCTTCCGTC
CTGTCCGCTCATCAAGTCACGAGCTCATTTCCCTCTATCCAAATGCTCTA
GTCGTATCAACGGCCACGAAAGCACCAGTCAAACGGCAGTTCGAGGCAGG
CCAGGCATGACGCCAGTGATGGGTCTGAACGCTAAGAACCTGGCCAAGAA
CAAGAAGAAAGGTGGTAAGAAGAAGGGCCGTTCCGCAGGCACTGCCACGG
CTCAGAATGGCACGCCACCCAGAGCAAAGGCTAATACAATCGATACCAAT
CGCCGAGAATACATTTACCAAATGGCTGGAGTGAGCAAAACACTCGACAA
CGGAAAACAGATTCTCAAGAACGTCAATTTGGCATACTTTCCTGGTGTCA
AGATAGGAGTGGTCGGTAGCAATGGCTCTGGGAAGAGCTCTCTGCTCAAA
ATCATCGCCGGACTCGATTCTGAATACGACGGAATAGCCGCACCGCAAAG
AGGCATCAAGATTGGCTACCTAGCCCAGGAACCCGTTCTTGAAGAGGAGA
CTGTGGAAGGGAACATTGCAAAGGCTGTGAGTGAATCACGCTCTTGGTTA
GACCGATATGCAGAGCTTGGAAGCATGATAGGCGAGGAAGGTTTAGAAGA
TGCCGCACGCGAGAAGATCACCAAGGAATGGGAATCCTTGCAAAACAAGA
TTGAAGCCTCGAATGCGTGGGAGCTTGATCGCAATATTGACAGAGCGCGC
GAGGCATTGAGATGCCCTCCCGGTGATGCTCGTGTGGAAACCCTAAGCGG
AGGGGAAAAGCGTCGAGTTGCGTTGTGTGCGCTTTTGCTTACGAGACCGG
ATCTGTTGATTCTTGATGAACCTACTAATCACCTGGATGCTCTATCTGTT
CTTTGGCTTGAGAGATTCTTAGAAACGTACAAGGGCACCGTGATTTGCGT
GACCCACGATCGCTTTTTCCTTGAGGCTCTCACAGATTGGATTTTGGAGA
TCGATAACGGTCAAGCATTCCCATATGAAGGGAACTATTCCACGTATCTC
GAGAAGAAGGCGAAGAGAATGGAACAAGAAGAAAAGGTGGCGTCTAGTCG
GCAGAAACTTATTCGGCACGAGCTCGAATGGATTCGATCAAGTCCAAAGG
GGCAACAAGCCAAATCTAAGGCCAGAATCTCTCGATACGAAAGTCTACTC
GAAGAAGACGCCAAAGCAAGCAGGCAGTCAGTGCTCGATCGCATGTACAT
CCCACCGGGTCCTAAGCTGGGAGACATTGTAGTAGAAGCCGAAGGTGTTC
GAAAGGGCTTTGGTGAGAATGTTCTCTTCGAAAACATGTCGTTCAGCTTA
CCGCGAGGTGGGATTGTTGGTGTCATAGGACCGAATGGAGCTGGAAAGAC
CACACTATTGCGAATGATCATGGGGGAGGAGAGTCCTGATGCTGGAGTGT
TCAAAGTCGGAGATTCTGTAGTCCCAATGTATGCAGATCAGAGTCGAGCC
TCAGTCGACAGACAAAAGTCGGTCTTCGAGACGGTGTCTGAAGGCAATGA
TGAACTGCAGTTGGGAAGTAGATCTGTGAGATCAAGAGCATATCTTTCGT
GGTTCAACTTCAAAGGAGGTGACCAACAAAAGCCCGTTGATGCCCTCAGT
GGTGGTGAACTTAACCGGCTAGCTCTAGCCCAAGTTGTGAAAGGCGGCGG
CAATGTGCTGCTTGGAGATGAGCTAACAAATGACGCCGATGCGTTTTTGA
TCCGGAGCCTGGAAGAAGCTTTGCTGTCTTTTGTTGGATGTGCGGTTATT
GTATCACATGATATCGCGTTTTTGAACAGAGTGGCGACTCATATTCTTGC
ATTCGAAGGAGACCTTGTTCCAGGTCAGGTGACATTTTTCGAAGGAAACT
TTTCAGCTTATCTGGAGGACAAACGTAAGAGATTTGGCGAGACAACCCCT
TCTCGAATGAAATTTGCGAAGCTACCCGCTGTTTAA
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