Gcaud9597.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9597.t1
Unique NameGcaud9597.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length403
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_586_length_21355_cov_4.545758contigNODE_586_length_21355_cov_4.545758:2186..3394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog469604.HMPREF0946_01633
PFAMsGDPD
Max annot lvl32066|Fusobacteria
KEGG rclassRC00017,RC00425
KEGG koko:K01126
KEGG ReactionR01030,R01470
KEGG Pathwayko00564,map00564
Evalue7.57e-18
EggNOG OGsCOG0584@1|root,COG0584@2|Bacteria,378Q4@32066|Fusobacteria
EC3.1.4.46
Descriptionglycerophosphoryl diester phosphodiesterase
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9597Gcaud9597Gracilaria caudata M_176_S67 malegeneNODE_586_length_21355_cov_4.545758 2186..3394 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9597.t1.start1Gcaud9597.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_586_length_21355_cov_4.545758 2186..2188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9597.t1.CDS1Gcaud9597.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_586_length_21355_cov_4.545758 2186..3394 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9597.t1.exon1Gcaud9597.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_586_length_21355_cov_4.545758 2186..3394 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9597.t1.stop1Gcaud9597.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_586_length_21355_cov_4.545758 3392..3394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9597.t1Gcaud9597.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_586_length_21355_cov_4.545758 2186..3394 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9597.t1 ID=Gcaud9597.t1|Name=Gcaud9597.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=403bp
MRRSAQNDPATTKPLFSVDDDEEESLPHHAPPPPPPSRKSFFRNASNSSP
HPSLFLIRLNRALFYFFPRILAAVVILLVTVTLLPGGWRVALCAANLLPA
PALRPGENITLIAHRGCEFPYPENSIHALRLGAEKLGYVELDITLSSDGK
VVVMHDQTLERTTNGTGIICTKSLDYIKQLELDMPTRDPRGRIAQGKFCT
VPSPRGGSIPCTYRVPTLEEVFDELPDGTRFMLDIKDCFADGLPVDSPKC
TNCTVLMKATRDLMQRFAVLPEHVVFTSPQTGSLRVFQEGIPRSTFAISM
DQKYSHFKRSTFRQLITGGKYEYAAMYYGLIAVRPDFVQIMRAEKVKGFG
KPGDVYAWTIRKDLDYRLARCAGVSKMIVAEPHRMKKSFTSGSIAEWLAE
NV*
back to top

spliced messenger RNA

>Gcaud9597.t1 ID=Gcaud9597.t1|Name=Gcaud9597.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at NODE_586_length_21355_cov_4.545758:2186..3394+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGTTCTGCGCAGAACGATCCGGCCACTACGAAGCCGCTGTTCTC
TGTCGATGACGATGAGGAAGAATCCCTTCCACACCACGCACCTCCACCAC
CTCCCCCTTCGCGCAAGTCCTTCTTCCGAAATGCCTCTAACAGCTCACCA
CATCCGAGCCTCTTCCTCATCCGCTTGAACCGCGCGCTCTTCTACTTCTT
TCCTCGCATTCTCGCAGCTGTTGTAATTCTTCTTGTGACGGTGACTCTTC
TGCCGGGTGGATGGCGAGTAGCACTATGTGCGGCAAATCTGTTACCCGCC
CCAGCGTTGCGCCCTGGGGAAAACATCACGCTTATAGCACATCGCGGCTG
TGAGTTTCCATACCCGGAAAATTCCATACACGCCTTACGCTTGGGAGCGG
AGAAACTGGGATACGTGGAGCTCGATATCACGCTTTCTTCGGATGGAAAG
GTTGTGGTTATGCATGATCAAACCTTGGAGCGAACAACGAACGGCACTGG
CATCATCTGCACCAAGTCCCTCGATTACATCAAGCAACTGGAACTCGACA
TGCCCACACGCGATCCACGCGGTCGAATAGCACAGGGAAAGTTTTGCACG
GTTCCCTCTCCCAGGGGAGGTTCAATTCCTTGCACGTACCGCGTTCCAAC
TTTGGAGGAGGTATTCGATGAGCTCCCCGATGGCACGCGGTTTATGCTCG
ATATCAAGGATTGTTTTGCGGATGGTCTTCCCGTGGACAGTCCAAAGTGT
ACCAACTGTACGGTCTTGATGAAAGCAACACGGGACCTCATGCAACGATT
TGCGGTACTACCAGAGCACGTTGTGTTCACTTCTCCTCAGACTGGCAGCT
TGCGAGTATTCCAAGAAGGCATACCGAGAAGCACATTTGCTATAAGTATG
GACCAAAAGTACTCACACTTTAAGAGATCAACATTCAGACAACTGATAAC
GGGCGGCAAATACGAGTATGCTGCAATGTATTACGGTTTGATTGCTGTTC
GTCCTGACTTTGTACAGATAATGCGAGCGGAGAAGGTCAAAGGGTTTGGT
AAACCCGGAGATGTTTATGCTTGGACAATACGAAAGGATCTCGACTATCG
ACTAGCTAGATGTGCAGGGGTAAGCAAGATGATTGTTGCCGAGCCGCACC
GCATGAAGAAGAGCTTCACGTCCGGCAGTATCGCTGAATGGCTCGCTGAA
AATGTGTAG
back to top

protein sequence of Gcaud9597.t1

>Gcaud9597.t1 ID=Gcaud9597.t1|Name=Gcaud9597.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=403bp
MRRSAQNDPATTKPLFSVDDDEEESLPHHAPPPPPPSRKSFFRNASNSSP
HPSLFLIRLNRALFYFFPRILAAVVILLVTVTLLPGGWRVALCAANLLPA
PALRPGENITLIAHRGCEFPYPENSIHALRLGAEKLGYVELDITLSSDGK
VVVMHDQTLERTTNGTGIICTKSLDYIKQLELDMPTRDPRGRIAQGKFCT
VPSPRGGSIPCTYRVPTLEEVFDELPDGTRFMLDIKDCFADGLPVDSPKC
TNCTVLMKATRDLMQRFAVLPEHVVFTSPQTGSLRVFQEGIPRSTFAISM
DQKYSHFKRSTFRQLITGGKYEYAAMYYGLIAVRPDFVQIMRAEKVKGFG
KPGDVYAWTIRKDLDYRLARCAGVSKMIVAEPHRMKKSFTSGSIAEWLAE
NV*
back to top

mRNA from alignment at NODE_586_length_21355_cov_4.545758:2186..3394+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9597.t1 ID=Gcaud9597.t1|Name=Gcaud9597.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1209bp|location=Sequence derived from alignment at NODE_586_length_21355_cov_4.545758:2186..3394+ (Gracilaria caudata M_176_S67 male)
ATGCGCCGTTCTGCGCAGAACGATCCGGCCACTACGAAGCCGCTGTTCTC
TGTCGATGACGATGAGGAAGAATCCCTTCCACACCACGCACCTCCACCAC
CTCCCCCTTCGCGCAAGTCCTTCTTCCGAAATGCCTCTAACAGCTCACCA
CATCCGAGCCTCTTCCTCATCCGCTTGAACCGCGCGCTCTTCTACTTCTT
TCCTCGCATTCTCGCAGCTGTTGTAATTCTTCTTGTGACGGTGACTCTTC
TGCCGGGTGGATGGCGAGTAGCACTATGTGCGGCAAATCTGTTACCCGCC
CCAGCGTTGCGCCCTGGGGAAAACATCACGCTTATAGCACATCGCGGCTG
TGAGTTTCCATACCCGGAAAATTCCATACACGCCTTACGCTTGGGAGCGG
AGAAACTGGGATACGTGGAGCTCGATATCACGCTTTCTTCGGATGGAAAG
GTTGTGGTTATGCATGATCAAACCTTGGAGCGAACAACGAACGGCACTGG
CATCATCTGCACCAAGTCCCTCGATTACATCAAGCAACTGGAACTCGACA
TGCCCACACGCGATCCACGCGGTCGAATAGCACAGGGAAAGTTTTGCACG
GTTCCCTCTCCCAGGGGAGGTTCAATTCCTTGCACGTACCGCGTTCCAAC
TTTGGAGGAGGTATTCGATGAGCTCCCCGATGGCACGCGGTTTATGCTCG
ATATCAAGGATTGTTTTGCGGATGGTCTTCCCGTGGACAGTCCAAAGTGT
ACCAACTGTACGGTCTTGATGAAAGCAACACGGGACCTCATGCAACGATT
TGCGGTACTACCAGAGCACGTTGTGTTCACTTCTCCTCAGACTGGCAGCT
TGCGAGTATTCCAAGAAGGCATACCGAGAAGCACATTTGCTATAAGTATG
GACCAAAAGTACTCACACTTTAAGAGATCAACATTCAGACAACTGATAAC
GGGCGGCAAATACGAGTATGCTGCAATGTATTACGGTTTGATTGCTGTTC
GTCCTGACTTTGTACAGATAATGCGAGCGGAGAAGGTCAAAGGGTTTGGT
AAACCCGGAGATGTTTATGCTTGGACAATACGAAAGGATCTCGACTATCG
ACTAGCTAGATGTGCAGGGGTAAGCAAGATGATTGTTGCCGAGCCGCACC
GCATGAAGAAGAGCTTCACGTCCGGCAGTATCGCTGAATGGCTCGCTGAA
AATGTGTAG
back to top

Coding sequence (CDS) from alignment at NODE_586_length_21355_cov_4.545758:2186..3394+

>Gcaud9597.t1 ID=Gcaud9597.t1|Name=Gcaud9597.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1209bp|location=Sequence derived from alignment at NODE_586_length_21355_cov_4.545758:2186..3394+ (Gracilaria caudata M_176_S67 male)
ATGCGCCGTTCTGCGCAGAACGATCCGGCCACTACGAAGCCGCTGTTCTC
TGTCGATGACGATGAGGAAGAATCCCTTCCACACCACGCACCTCCACCAC
CTCCCCCTTCGCGCAAGTCCTTCTTCCGAAATGCCTCTAACAGCTCACCA
CATCCGAGCCTCTTCCTCATCCGCTTGAACCGCGCGCTCTTCTACTTCTT
TCCTCGCATTCTCGCAGCTGTTGTAATTCTTCTTGTGACGGTGACTCTTC
TGCCGGGTGGATGGCGAGTAGCACTATGTGCGGCAAATCTGTTACCCGCC
CCAGCGTTGCGCCCTGGGGAAAACATCACGCTTATAGCACATCGCGGCTG
TGAGTTTCCATACCCGGAAAATTCCATACACGCCTTACGCTTGGGAGCGG
AGAAACTGGGATACGTGGAGCTCGATATCACGCTTTCTTCGGATGGAAAG
GTTGTGGTTATGCATGATCAAACCTTGGAGCGAACAACGAACGGCACTGG
CATCATCTGCACCAAGTCCCTCGATTACATCAAGCAACTGGAACTCGACA
TGCCCACACGCGATCCACGCGGTCGAATAGCACAGGGAAAGTTTTGCACG
GTTCCCTCTCCCAGGGGAGGTTCAATTCCTTGCACGTACCGCGTTCCAAC
TTTGGAGGAGGTATTCGATGAGCTCCCCGATGGCACGCGGTTTATGCTCG
ATATCAAGGATTGTTTTGCGGATGGTCTTCCCGTGGACAGTCCAAAGTGT
ACCAACTGTACGGTCTTGATGAAAGCAACACGGGACCTCATGCAACGATT
TGCGGTACTACCAGAGCACGTTGTGTTCACTTCTCCTCAGACTGGCAGCT
TGCGAGTATTCCAAGAAGGCATACCGAGAAGCACATTTGCTATAAGTATG
GACCAAAAGTACTCACACTTTAAGAGATCAACATTCAGACAACTGATAAC
GGGCGGCAAATACGAGTATGCTGCAATGTATTACGGTTTGATTGCTGTTC
GTCCTGACTTTGTACAGATAATGCGAGCGGAGAAGGTCAAAGGGTTTGGT
AAACCCGGAGATGTTTATGCTTGGACAATACGAAAGGATCTCGACTATCG
ACTAGCTAGATGTGCAGGGGTAAGCAAGATGATTGTTGCCGAGCCGCACC
GCATGAAGAAGAGCTTCACGTCCGGCAGTATCGCTGAATGGCTCGCTGAA
AATGTGTAG
back to top