|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 397948.Cmaq_0541 |
| PFAMs | AAA,CDC48_2,CDC48_N,Vps4_C |
| Max annot lvl | 28889|Crenarchaeota |
| KEGG ko | ko:K13525 |
| KEGG TC | 3.A.16.1 |
| KEGG Pathway | ko04141,ko05134,map04141,map05134 |
| KEGG Module | M00400,M00403 |
| Evalue | 1.39e-50 |
| EggNOG OGs | COG0464@1|root,arCOG01308@2157|Archaea,2XPPI@28889|Crenarchaeota |
| Description | Cell division protein 48 (CDC48), domain 2 |
| COG category | O |
| BRITE | ko00000,ko00001,ko00002,ko03019,ko04131,ko04147 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud9595.t1.stop1 | Gcaud9595.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_749_length_18675_cov_4.529918 17813..17815 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud9595.t1.start1 | Gcaud9595.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_749_length_18675_cov_4.529918 18668..18670 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud9595.t1 ID=Gcaud9595.t1|Name=Gcaud9595.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=227bp
LLSKWVGASEKAVRNIFRRARQAAPCVIFFDEIDALATSRSFVAGASAQA
RVVAQLLSEMDGIDTTGSNRVVVIAATNRPDCLDSAFLRPGRIDVQIYIG
LPDHDERWSILKVHTKKVPLGEDVDLEEVARCTKGYSGAEVAAIVREAAL
CAMERDVENASLLTASDFGAAMGKVYARTPAKLCIRRDCEAAKPSFPRKT
LRTPQKDQQVITRDKNTTFKGLSTRA* back to topspliced messenger RNA >Gcaud9595.t1 ID=Gcaud9595.t1|Name=Gcaud9595.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=681bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:17813..18670- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
CTGTTATCCAAATGGGTCGGAGCAAGTGAGAAGGCTGTACGGAACATCTT
CAGAAGAGCGCGACAAGCAGCGCCTTGTGTTATCTTCTTCGATGAGATTG
ACGCCCTGGCCACATCTCGGAGTTTTGTGGCCGGTGCGTCGGCACAGGCT
CGAGTAGTTGCTCAACTGTTGTCCGAGATGGATGGTATTGATACAACCGG
GAGCAATCGCGTTGTGGTTATCGCTGCAACAAATCGTCCAGATTGCTTAG
ACTCTGCTTTCCTTAGGCCAGGTCGGATAGATGTACAAATATATATCGGA
CTTCCTGACCATGACGAGCGTTGGTCAATACTGAAAGTGCATACAAAAAA
GGTTCCGCTTGGAGAAGACGTGGATCTGGAGGAAGTGGCCCGTTGTACCA
AAGGTTATTCTGGTGCGGAAGTCGCTGCTATTGTTCGTGAAGCTGCGTTA
TGCGCAATGGAGCGCGACGTGGAAAATGCTTCCCTTCTAACCGCGAGCGA
TTTTGGCGCTGCGATGGGCAAGGTGTATGCTCGCACCCCCGCAAAGCTTT
GTATACGACGCGATTGTGAGGCGGCAAAGCCCTCCTTCCCCAGAAAGACC
TTGCGTACTCCTCAAAAAGACCAACAAGTGATCACAAGGGACAAGAACAC
AACCTTCAAAGGTCTCAGTACTCGGGCCTAG back to topprotein sequence of Gcaud9595.t1 >Gcaud9595.t1 ID=Gcaud9595.t1|Name=Gcaud9595.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=227bp
LLSKWVGASEKAVRNIFRRARQAAPCVIFFDEIDALATSRSFVAGASAQA
RVVAQLLSEMDGIDTTGSNRVVVIAATNRPDCLDSAFLRPGRIDVQIYIG
LPDHDERWSILKVHTKKVPLGEDVDLEEVARCTKGYSGAEVAAIVREAAL
CAMERDVENASLLTASDFGAAMGKVYARTPAKLCIRRDCEAAKPSFPRKT
LRTPQKDQQVITRDKNTTFKGLSTRA* back to topmRNA from alignment at NODE_749_length_18675_cov_4.529918:17813..18670- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud9595.t1 ID=Gcaud9595.t1|Name=Gcaud9595.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=858bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:17813..18670- (Gracilaria caudata M_176_S67 male)
CTGTTATCCAAATGGGTCGGAGCAAGTGAGAAGGCTGTACGGAACATCTT
CAGAAGAGCGCGACAAGCAGCGCCTTGTGTTATCTTCTTCGATGAGATTG
ACGCCCTGGCCACATCTCGGAGTTTTGTGGCCGGTGCGTCGGCACAGGCT
CGAGTAGTTGCTCAACTGTTGTCCGAGATGGATGGTATTGATACAACCGG
GAGCAATCGCGTTGTGGTTATCGCTGCAACAAATCGTCCAGATTGCTTAG
ACTCTGCTTTCCTTAGGCCAGGTCGGATAGATGTACAAATATATATCGGA
CTTCCTGACCATGACGAGCGTTGGTCAATACTGAAAGTGCATACAAAAAA
GGTTCCGCTTGGAGAAGACGTGGATCTGGAGGAAGTGGCCCGTTGTACCA
AAGGTTATTCTGGTGCGGAAGTCGCTGCTATTGTTCGTGAAGCTGCGTTA
TGCGCAATGGAGCGCGACGTGGAAAATGCTTCCCTTCTAACCGCGAGCGA
TTTTGGCGCTGCGATGGGCAAGGTGTATGCTCGCACCCCCGCAAGTGTCT
TAGAATACTTTGAGTCTTATAAGAGCCAATTACAAGAGAAGTTGTTCGGT
GCCCTGTAATTCTTCGTCGCTCCTACGGACAGAGCTTTGTATACGACGCG
ATTGTGAGGCGGCAAAGCCCTCCTTCCCCAGAAAGAGTAAGAACTTCAAT
TGCCAATCTGTTGCATACTACTATCTTGCGAAGTTTCCGCTCTTCGCCCC
TGAGGCTGACTTTTGTTATTATCAGCCTTGCGTACTCCTCAAAAAGACCA
ACAAGTGATCACAAGGGACAAGAACACAACCTTCAAAGGTCTCAGTACTC
GGGCCTAG back to topCoding sequence (CDS) from alignment at NODE_749_length_18675_cov_4.529918:17813..18670- >Gcaud9595.t1 ID=Gcaud9595.t1|Name=Gcaud9595.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=681bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:17813..18670- (Gracilaria caudata M_176_S67 male)
CTGTTATCCAAATGGGTCGGAGCAAGTGAGAAGGCTGTACGGAACATCTT
CAGAAGAGCGCGACAAGCAGCGCCTTGTGTTATCTTCTTCGATGAGATTG
ACGCCCTGGCCACATCTCGGAGTTTTGTGGCCGGTGCGTCGGCACAGGCT
CGAGTAGTTGCTCAACTGTTGTCCGAGATGGATGGTATTGATACAACCGG
GAGCAATCGCGTTGTGGTTATCGCTGCAACAAATCGTCCAGATTGCTTAG
ACTCTGCTTTCCTTAGGCCAGGTCGGATAGATGTACAAATATATATCGGA
CTTCCTGACCATGACGAGCGTTGGTCAATACTGAAAGTGCATACAAAAAA
GGTTCCGCTTGGAGAAGACGTGGATCTGGAGGAAGTGGCCCGTTGTACCA
AAGGTTATTCTGGTGCGGAAGTCGCTGCTATTGTTCGTGAAGCTGCGTTA
TGCGCAATGGAGCGCGACGTGGAAAATGCTTCCCTTCTAACCGCGAGCGA
TTTTGGCGCTGCGATGGGCAAGGTGTATGCTCGCACCCCCGCAAAGCTTT
GTATACGACGCGATTGTGAGGCGGCAAAGCCCTCCTTCCCCAGAAAGACC
TTGCGTACTCCTCAAAAAGACCAACAAGTGATCACAAGGGACAAGAACAC
AACCTTCAAAGGTCTCAGTACTCGGGCCTAG back to top
|