Gcaud9593.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9593.t1
Unique NameGcaud9593.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_749_length_18675_cov_4.529918contigNODE_749_length_18675_cov_4.529918:15642..16204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003059493.1
PFAMsPrefoldin
Max annot lvl3041|Chlorophyta
KEGG koko:K04797
Evalue5.08e-22
EggNOG OGsCOG1730@1|root,KOG3048@2759|Eukaryota,37TSS@33090|Viridiplantae,34IPU@3041|Chlorophyta
DescriptionPrefoldin subunit
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9593Gcaud9593Gracilaria caudata M_176_S67 malegeneNODE_749_length_18675_cov_4.529918 15642..16204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9593.t1Gcaud9593.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_749_length_18675_cov_4.529918 15642..16204 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9593.t1.stop1Gcaud9593.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_749_length_18675_cov_4.529918 15642..15644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9593.t1.CDS1Gcaud9593.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_749_length_18675_cov_4.529918 15642..16124 -
Gcaud9593.t1.CDS2Gcaud9593.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_749_length_18675_cov_4.529918 16199..16204 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9593.t1.exon1Gcaud9593.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_749_length_18675_cov_4.529918 15642..16124 -
Gcaud9593.t1.exon2Gcaud9593.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_749_length_18675_cov_4.529918 16199..16204 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9593.t1.intron1Gcaud9593.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_749_length_18675_cov_4.529918 16125..16198 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9593.t1.start1Gcaud9593.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_749_length_18675_cov_4.529918 16202..16204 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9593.t1 ID=Gcaud9593.t1|Name=Gcaud9593.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=163bp
MKSSAGADAATPGGTVALGSLAPQQLQKIQSDLQREIELISASLAQLSNA
VQRLTASRENAAQMADMEIGADVMVPITSSIYVPGKLQDTSKVLIDIGTG
FFVEKTPTAAKEYFAKRASLLKEEQDRATQVHTQKRQHLEAVSAVLHRKT
AELNASEGSSSK*
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spliced messenger RNA

>Gcaud9593.t1 ID=Gcaud9593.t1|Name=Gcaud9593.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=489bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:15642..16204- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGCAGCGCCGGAGCGGATGCAGCTACCCCGGGGGGGACGGTAGC
TCTTGGAAGCTTAGCGCCACAACAGCTTCAGAAGATACAATCGGATCTGC
AAAGAGAAATAGAACTCATTTCAGCATCTCTAGCACAATTGTCCAACGCG
GTGCAACGTCTAACAGCCAGTCGGGAAAATGCGGCTCAGATGGCAGATAT
GGAAATCGGTGCCGACGTTATGGTACCAATCACCAGTTCCATCTACGTGC
CGGGGAAGCTTCAAGACACCTCAAAGGTTTTGATTGATATTGGTACAGGG
TTTTTCGTAGAGAAGACGCCTACAGCCGCAAAGGAGTACTTTGCCAAGAG
GGCGTCACTGTTGAAGGAAGAACAAGACCGTGCTACACAAGTTCATACAC
AGAAACGGCAACATTTGGAAGCAGTGAGTGCTGTTCTACATCGCAAAACA
GCTGAGCTAAACGCCAGCGAGGGGTCGTCATCGAAGTGA
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protein sequence of Gcaud9593.t1

>Gcaud9593.t1 ID=Gcaud9593.t1|Name=Gcaud9593.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=163bp
MKSSAGADAATPGGTVALGSLAPQQLQKIQSDLQREIELISASLAQLSNA
VQRLTASRENAAQMADMEIGADVMVPITSSIYVPGKLQDTSKVLIDIGTG
FFVEKTPTAAKEYFAKRASLLKEEQDRATQVHTQKRQHLEAVSAVLHRKT
AELNASEGSSSK*
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mRNA from alignment at NODE_749_length_18675_cov_4.529918:15642..16204-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9593.t1 ID=Gcaud9593.t1|Name=Gcaud9593.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=563bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:15642..16204- (Gracilaria caudata M_176_S67 male)
ATGAAGGTACGTACTTCAGGAACATGTTGTCAGCGAAAGAGCGAGAACTG
CATCGGCTGACCAAGCGTGAGAACGTGTAGAGCAGCGCCGGAGCGGATGC
AGCTACCCCGGGGGGGACGGTAGCTCTTGGAAGCTTAGCGCCACAACAGC
TTCAGAAGATACAATCGGATCTGCAAAGAGAAATAGAACTCATTTCAGCA
TCTCTAGCACAATTGTCCAACGCGGTGCAACGTCTAACAGCCAGTCGGGA
AAATGCGGCTCAGATGGCAGATATGGAAATCGGTGCCGACGTTATGGTAC
CAATCACCAGTTCCATCTACGTGCCGGGGAAGCTTCAAGACACCTCAAAG
GTTTTGATTGATATTGGTACAGGGTTTTTCGTAGAGAAGACGCCTACAGC
CGCAAAGGAGTACTTTGCCAAGAGGGCGTCACTGTTGAAGGAAGAACAAG
ACCGTGCTACACAAGTTCATACACAGAAACGGCAACATTTGGAAGCAGTG
AGTGCTGTTCTACATCGCAAAACAGCTGAGCTAAACGCCAGCGAGGGGTC
GTCATCGAAGTGA
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Coding sequence (CDS) from alignment at NODE_749_length_18675_cov_4.529918:15642..16204-

>Gcaud9593.t1 ID=Gcaud9593.t1|Name=Gcaud9593.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=489bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:15642..16204- (Gracilaria caudata M_176_S67 male)
ATGAAGAGCAGCGCCGGAGCGGATGCAGCTACCCCGGGGGGGACGGTAGC
TCTTGGAAGCTTAGCGCCACAACAGCTTCAGAAGATACAATCGGATCTGC
AAAGAGAAATAGAACTCATTTCAGCATCTCTAGCACAATTGTCCAACGCG
GTGCAACGTCTAACAGCCAGTCGGGAAAATGCGGCTCAGATGGCAGATAT
GGAAATCGGTGCCGACGTTATGGTACCAATCACCAGTTCCATCTACGTGC
CGGGGAAGCTTCAAGACACCTCAAAGGTTTTGATTGATATTGGTACAGGG
TTTTTCGTAGAGAAGACGCCTACAGCCGCAAAGGAGTACTTTGCCAAGAG
GGCGTCACTGTTGAAGGAAGAACAAGACCGTGCTACACAAGTTCATACAC
AGAAACGGCAACATTTGGAAGCAGTGAGTGCTGTTCTACATCGCAAAACA
GCTGAGCTAAACGCCAGCGAGGGGTCGTCATCGAAGTGA
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