Gcaud9591.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9591.t1
Unique Name	Gcaud9591.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	361

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_749_length_18675_cov_4.529918	contig	NODE_749_length_18675_cov_4.529918:12682..13764 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LSF8
PFAMs	Semialdhyde_dh,Semialdhyde_dhC
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00684
KEGG ko	ko:K00145
KEGG Reaction	R03443
KEGG Pathway	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG Module	M00028,M00845
GOs	GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0010035,GO:0010038,GO:0016020,GO:0031974,GO:0031981,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0070013
Evalue	2.98e-147
EggNOG OGs	COG0002@1\|root,KOG4354@2759\|Eukaryota
EC	1.2.1.38
Description	N-acetyl-gamma-glutamyl-phosphate reductase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9591	Gcaud9591	Gracilaria caudata M_176_S67 male	gene	NODE_749_length_18675_cov_4.529918 12682..13764 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9591.t1.stop1	Gcaud9591.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_749_length_18675_cov_4.529918 12682..12684 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9591.t1.CDS1	Gcaud9591.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_749_length_18675_cov_4.529918 12682..13764 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9591.t1.exon1	Gcaud9591.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_749_length_18675_cov_4.529918 12682..13764 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9591.t1.start1	Gcaud9591.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_749_length_18675_cov_4.529918 13762..13764 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9591.t1	Gcaud9591.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_749_length_18675_cov_4.529918 12682..13764 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_749_length_18675_cov_4.529918:12682..13764-
coding sequence from alignment at NODE_749_length_18675_cov_4.529918:12682..13764-

mRNA sequence

>Gcaud9591.t1 ID=Gcaud9591.t1|Name=Gcaud9591.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=361bp
MTATSAPPIKVAILGASGYTGAELLRLLAQHPLAQITTLTADRSAGKSIG
EVYPQFSFGPFAAKLPTLVKTTDVQHWTDKAHIVFCCLPHATTQDIIASL
PLDDGLRVIDLSADFRLRDVQLYQKWYGGEHHAKELQKEAVYGITELFRD
QVRTARLVANPGCYPTSAQLPLIPLLREKLILPHDIIIDAKSGTSGAGRS
PKVATLFCEVADGISAYGVAKHRHTPEIEQGLSDAYGSPVHVSFTPHLMP
MSRGILETIYVKLAPNVDADALRQCLKRTYQSEQFVHVLDHGLPPPQTRH
VRGSNNCVMAVVDDAVPGRAIIVSCLDNVVKGASGQAIQNMNVMMGLPEN
MGLEVQPTFP*

spliced messenger RNA

>Gcaud9591.t1 ID=Gcaud9591.t1|Name=Gcaud9591.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:12682..13764- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCCACCTCAGCACCGCCAATTAAAGTGGCAATCCTCGGAGCCTC
AGGTTATACTGGTGCCGAATTGTTACGTCTCCTCGCTCAGCACCCGCTCG
CACAAATCACCACACTCACAGCAGATCGCTCCGCCGGAAAGTCTATTGGA
GAAGTTTACCCGCAGTTTTCCTTCGGTCCATTCGCCGCTAAGCTTCCCAC
GTTGGTGAAAACCACCGACGTACAACACTGGACTGATAAAGCTCACATCG
TGTTCTGCTGCCTACCACACGCTACCACACAGGACATCATTGCATCTTTG
CCTCTGGACGATGGTCTGCGCGTCATCGACTTGTCCGCCGATTTTCGACT
GCGAGATGTACAGCTGTATCAGAAGTGGTACGGCGGCGAGCATCACGCAA
AAGAACTTCAGAAAGAGGCTGTCTATGGAATAACAGAGCTCTTCAGGGAT
CAGGTACGCACCGCTCGATTGGTGGCAAACCCGGGATGCTATCCCACCTC
AGCTCAACTACCTCTAATACCACTACTGCGAGAAAAGCTAATTCTACCGC
ACGATATCATCATCGATGCCAAATCAGGTACATCAGGAGCTGGCAGAAGC
CCTAAGGTGGCAACCTTGTTCTGCGAAGTTGCCGACGGTATATCAGCTTA
CGGCGTGGCAAAACATAGACACACCCCTGAAATTGAACAGGGTCTATCGG
ACGCTTACGGCTCTCCCGTGCACGTATCCTTCACACCTCACCTCATGCCC
ATGTCGCGCGGCATTCTGGAAACAATTTATGTCAAACTCGCTCCCAATGT
AGATGCCGATGCCCTGCGACAATGCTTGAAGCGCACATATCAATCCGAAC
AGTTTGTTCACGTGCTTGATCACGGTCTACCCCCTCCACAAACTCGTCAC
GTTCGAGGCAGCAATAACTGTGTCATGGCTGTTGTCGATGACGCAGTACC
AGGTCGTGCCATTATCGTCAGTTGCCTTGATAATGTGGTCAAGGGTGCAT
CGGGGCAAGCCATTCAAAACATGAACGTCATGATGGGTCTTCCAGAGAAT
ATGGGTTTAGAAGTGCAACCTACTTTCCCGTAA

protein sequence of Gcaud9591.t1

>Gcaud9591.t1 ID=Gcaud9591.t1|Name=Gcaud9591.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=361bp
MTATSAPPIKVAILGASGYTGAELLRLLAQHPLAQITTLTADRSAGKSIG
EVYPQFSFGPFAAKLPTLVKTTDVQHWTDKAHIVFCCLPHATTQDIIASL
PLDDGLRVIDLSADFRLRDVQLYQKWYGGEHHAKELQKEAVYGITELFRD
QVRTARLVANPGCYPTSAQLPLIPLLREKLILPHDIIIDAKSGTSGAGRS
PKVATLFCEVADGISAYGVAKHRHTPEIEQGLSDAYGSPVHVSFTPHLMP
MSRGILETIYVKLAPNVDADALRQCLKRTYQSEQFVHVLDHGLPPPQTRH
VRGSNNCVMAVVDDAVPGRAIIVSCLDNVVKGASGQAIQNMNVMMGLPEN
MGLEVQPTFP*

mRNA from alignment at NODE_749_length_18675_cov_4.529918:12682..13764-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9591.t1 ID=Gcaud9591.t1|Name=Gcaud9591.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:12682..13764- (Gracilaria caudata M_176_S67 male)
ATGACAGCCACCTCAGCACCGCCAATTAAAGTGGCAATCCTCGGAGCCTC
AGGTTATACTGGTGCCGAATTGTTACGTCTCCTCGCTCAGCACCCGCTCG
CACAAATCACCACACTCACAGCAGATCGCTCCGCCGGAAAGTCTATTGGA
GAAGTTTACCCGCAGTTTTCCTTCGGTCCATTCGCCGCTAAGCTTCCCAC
GTTGGTGAAAACCACCGACGTACAACACTGGACTGATAAAGCTCACATCG
TGTTCTGCTGCCTACCACACGCTACCACACAGGACATCATTGCATCTTTG
CCTCTGGACGATGGTCTGCGCGTCATCGACTTGTCCGCCGATTTTCGACT
GCGAGATGTACAGCTGTATCAGAAGTGGTACGGCGGCGAGCATCACGCAA
AAGAACTTCAGAAAGAGGCTGTCTATGGAATAACAGAGCTCTTCAGGGAT
CAGGTACGCACCGCTCGATTGGTGGCAAACCCGGGATGCTATCCCACCTC
AGCTCAACTACCTCTAATACCACTACTGCGAGAAAAGCTAATTCTACCGC
ACGATATCATCATCGATGCCAAATCAGGTACATCAGGAGCTGGCAGAAGC
CCTAAGGTGGCAACCTTGTTCTGCGAAGTTGCCGACGGTATATCAGCTTA
CGGCGTGGCAAAACATAGACACACCCCTGAAATTGAACAGGGTCTATCGG
ACGCTTACGGCTCTCCCGTGCACGTATCCTTCACACCTCACCTCATGCCC
ATGTCGCGCGGCATTCTGGAAACAATTTATGTCAAACTCGCTCCCAATGT
AGATGCCGATGCCCTGCGACAATGCTTGAAGCGCACATATCAATCCGAAC
AGTTTGTTCACGTGCTTGATCACGGTCTACCCCCTCCACAAACTCGTCAC
GTTCGAGGCAGCAATAACTGTGTCATGGCTGTTGTCGATGACGCAGTACC
AGGTCGTGCCATTATCGTCAGTTGCCTTGATAATGTGGTCAAGGGTGCAT
CGGGGCAAGCCATTCAAAACATGAACGTCATGATGGGTCTTCCAGAGAAT
ATGGGTTTAGAAGTGCAACCTACTTTCCCGTAA

Coding sequence (CDS) from alignment at NODE_749_length_18675_cov_4.529918:12682..13764-

>Gcaud9591.t1 ID=Gcaud9591.t1|Name=Gcaud9591.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1083bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:12682..13764- (Gracilaria caudata M_176_S67 male)
ATGACAGCCACCTCAGCACCGCCAATTAAAGTGGCAATCCTCGGAGCCTC
AGGTTATACTGGTGCCGAATTGTTACGTCTCCTCGCTCAGCACCCGCTCG
CACAAATCACCACACTCACAGCAGATCGCTCCGCCGGAAAGTCTATTGGA
GAAGTTTACCCGCAGTTTTCCTTCGGTCCATTCGCCGCTAAGCTTCCCAC
GTTGGTGAAAACCACCGACGTACAACACTGGACTGATAAAGCTCACATCG
TGTTCTGCTGCCTACCACACGCTACCACACAGGACATCATTGCATCTTTG
CCTCTGGACGATGGTCTGCGCGTCATCGACTTGTCCGCCGATTTTCGACT
GCGAGATGTACAGCTGTATCAGAAGTGGTACGGCGGCGAGCATCACGCAA
AAGAACTTCAGAAAGAGGCTGTCTATGGAATAACAGAGCTCTTCAGGGAT
CAGGTACGCACCGCTCGATTGGTGGCAAACCCGGGATGCTATCCCACCTC
AGCTCAACTACCTCTAATACCACTACTGCGAGAAAAGCTAATTCTACCGC
ACGATATCATCATCGATGCCAAATCAGGTACATCAGGAGCTGGCAGAAGC
CCTAAGGTGGCAACCTTGTTCTGCGAAGTTGCCGACGGTATATCAGCTTA
CGGCGTGGCAAAACATAGACACACCCCTGAAATTGAACAGGGTCTATCGG
ACGCTTACGGCTCTCCCGTGCACGTATCCTTCACACCTCACCTCATGCCC
ATGTCGCGCGGCATTCTGGAAACAATTTATGTCAAACTCGCTCCCAATGT
AGATGCCGATGCCCTGCGACAATGCTTGAAGCGCACATATCAATCCGAAC
AGTTTGTTCACGTGCTTGATCACGGTCTACCCCCTCCACAAACTCGTCAC
GTTCGAGGCAGCAATAACTGTGTCATGGCTGTTGTCGATGACGCAGTACC
AGGTCGTGCCATTATCGTCAGTTGCCTTGATAATGTGGTCAAGGGTGCAT
CGGGGCAAGCCATTCAAAACATGAACGTCATGATGGGTCTTCCAGAGAAT
ATGGGTTTAGAAGTGCAACCTACTTTCCCGTAA