Gcaud959.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud959.t1
Unique Name	Gcaud959.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	246

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_6413_length_1189_cov_7.680328	contig	NODE_6413_length_1189_cov_7.680328:141..878 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3067.XP_002946011.1
PFAMs	Peptidase_C1
Max annot lvl	2759\|Eukaryota
Evalue	1.6e-21
EggNOG OGs	COG4870@1\|root,2S8PN@2759\|Eukaryota
Description	Belongs to the peptidase C1 family
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud959	Gcaud959	Gracilaria caudata M_176_S67 male	gene	NODE_6413_length_1189_cov_7.680328 141..878 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud959.t1.stop1	Gcaud959.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_6413_length_1189_cov_7.680328 141..143 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud959.t1.CDS1	Gcaud959.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_6413_length_1189_cov_7.680328 141..878 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud959.t1.exon1	Gcaud959.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_6413_length_1189_cov_7.680328 141..878 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud959.t1.start1	Gcaud959.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_6413_length_1189_cov_7.680328 876..878 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud959.t1	Gcaud959.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_6413_length_1189_cov_7.680328 141..878 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_6413_length_1189_cov_7.680328:141..878-
coding sequence from alignment at NODE_6413_length_1189_cov_7.680328:141..878-

mRNA sequence

>Gcaud959.t1 ID=Gcaud959.t1|Name=Gcaud959.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=246bp
MIAPRNLFTLSMVSLLTLVSASAVARHNSVIPIVDIHESTLVIPLVRQQQ
EEAVFAVNSSSTGFARTSQAGLTVQRGTSGVLNFAFTINAIEAETLANMD
EQFSSSLSVSESEEYRRLREDYRSGFGIPFLRFLGINLNNRQVSREEMER
SFELREDYNTQSSIAQQILSNVQVQQLQISGQLTAFGTSFIPTTVFAFIR
IARIQTQDGMTLTVVSQSGDNLVAADAGGNTVPSSGGNIDIVPLF*

spliced messenger RNA

>Gcaud959.t1 ID=Gcaud959.t1|Name=Gcaud959.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=738bp|location=Sequence derived from alignment at NODE_6413_length_1189_cov_7.680328:141..878- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGCCCCAAGGAATCTCTTTACCCTCTCCATGGTGTCGCTTCTGAC
CCTTGTGTCCGCGTCCGCCGTCGCCCGACACAACTCCGTTATCCCTATCG
TCGACATTCACGAGTCCACCCTCGTCATTCCGCTCGTCCGTCAGCAGCAG
GAAGAAGCAGTGTTTGCAGTTAACAGCTCCAGCACCGGATTCGCCCGTAC
GTCACAAGCCGGCCTCACTGTTCAGAGGGGAACCAGCGGTGTGTTGAACT
TTGCTTTTACCATCAACGCCATTGAGGCCGAGACTCTGGCCAATATGGAT
GAACAGTTCTCCAGCTCACTGTCTGTGTCGGAGAGCGAAGAGTACCGCCG
TCTCCGTGAGGATTACCGCAGTGGTTTCGGAATCCCATTTCTGAGGTTCC
TGGGAATCAATCTCAACAACCGTCAGGTGAGCCGTGAAGAGATGGAACGC
TCGTTCGAGCTGCGTGAGGACTACAACACGCAGTCCTCCATTGCACAGCA
GATCCTGTCCAATGTGCAGGTGCAGCAGTTGCAAATCTCCGGACAGCTTA
CTGCCTTTGGCACCAGCTTCATCCCCACCACCGTGTTCGCCTTCATCCGT
ATTGCTCGCATCCAGACTCAGGACGGTATGACGTTGACCGTTGTGTCGCA
GAGCGGTGACAATCTGGTGGCGGCCGATGCCGGTGGAAACACGGTGCCAT
CTTCCGGGGGCAACATTGACATTGTCCCTCTTTTCTAA

protein sequence of Gcaud959.t1

>Gcaud959.t1 ID=Gcaud959.t1|Name=Gcaud959.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=246bp
MIAPRNLFTLSMVSLLTLVSASAVARHNSVIPIVDIHESTLVIPLVRQQQ
EEAVFAVNSSSTGFARTSQAGLTVQRGTSGVLNFAFTINAIEAETLANMD
EQFSSSLSVSESEEYRRLREDYRSGFGIPFLRFLGINLNNRQVSREEMER
SFELREDYNTQSSIAQQILSNVQVQQLQISGQLTAFGTSFIPTTVFAFIR
IARIQTQDGMTLTVVSQSGDNLVAADAGGNTVPSSGGNIDIVPLF*

mRNA from alignment at NODE_6413_length_1189_cov_7.680328:141..878-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud959.t1 ID=Gcaud959.t1|Name=Gcaud959.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=738bp|location=Sequence derived from alignment at NODE_6413_length_1189_cov_7.680328:141..878- (Gracilaria caudata M_176_S67 male)
ATGATCGCCCCAAGGAATCTCTTTACCCTCTCCATGGTGTCGCTTCTGAC
CCTTGTGTCCGCGTCCGCCGTCGCCCGACACAACTCCGTTATCCCTATCG
TCGACATTCACGAGTCCACCCTCGTCATTCCGCTCGTCCGTCAGCAGCAG
GAAGAAGCAGTGTTTGCAGTTAACAGCTCCAGCACCGGATTCGCCCGTAC
GTCACAAGCCGGCCTCACTGTTCAGAGGGGAACCAGCGGTGTGTTGAACT
TTGCTTTTACCATCAACGCCATTGAGGCCGAGACTCTGGCCAATATGGAT
GAACAGTTCTCCAGCTCACTGTCTGTGTCGGAGAGCGAAGAGTACCGCCG
TCTCCGTGAGGATTACCGCAGTGGTTTCGGAATCCCATTTCTGAGGTTCC
TGGGAATCAATCTCAACAACCGTCAGGTGAGCCGTGAAGAGATGGAACGC
TCGTTCGAGCTGCGTGAGGACTACAACACGCAGTCCTCCATTGCACAGCA
GATCCTGTCCAATGTGCAGGTGCAGCAGTTGCAAATCTCCGGACAGCTTA
CTGCCTTTGGCACCAGCTTCATCCCCACCACCGTGTTCGCCTTCATCCGT
ATTGCTCGCATCCAGACTCAGGACGGTATGACGTTGACCGTTGTGTCGCA
GAGCGGTGACAATCTGGTGGCGGCCGATGCCGGTGGAAACACGGTGCCAT
CTTCCGGGGGCAACATTGACATTGTCCCTCTTTTCTAA

Coding sequence (CDS) from alignment at NODE_6413_length_1189_cov_7.680328:141..878-

>Gcaud959.t1 ID=Gcaud959.t1|Name=Gcaud959.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=738bp|location=Sequence derived from alignment at NODE_6413_length_1189_cov_7.680328:141..878- (Gracilaria caudata M_176_S67 male)
ATGATCGCCCCAAGGAATCTCTTTACCCTCTCCATGGTGTCGCTTCTGAC
CCTTGTGTCCGCGTCCGCCGTCGCCCGACACAACTCCGTTATCCCTATCG
TCGACATTCACGAGTCCACCCTCGTCATTCCGCTCGTCCGTCAGCAGCAG
GAAGAAGCAGTGTTTGCAGTTAACAGCTCCAGCACCGGATTCGCCCGTAC
GTCACAAGCCGGCCTCACTGTTCAGAGGGGAACCAGCGGTGTGTTGAACT
TTGCTTTTACCATCAACGCCATTGAGGCCGAGACTCTGGCCAATATGGAT
GAACAGTTCTCCAGCTCACTGTCTGTGTCGGAGAGCGAAGAGTACCGCCG
TCTCCGTGAGGATTACCGCAGTGGTTTCGGAATCCCATTTCTGAGGTTCC
TGGGAATCAATCTCAACAACCGTCAGGTGAGCCGTGAAGAGATGGAACGC
TCGTTCGAGCTGCGTGAGGACTACAACACGCAGTCCTCCATTGCACAGCA
GATCCTGTCCAATGTGCAGGTGCAGCAGTTGCAAATCTCCGGACAGCTTA
CTGCCTTTGGCACCAGCTTCATCCCCACCACCGTGTTCGCCTTCATCCGT
ATTGCTCGCATCCAGACTCAGGACGGTATGACGTTGACCGTTGTGTCGCA
GAGCGGTGACAATCTGGTGGCGGCCGATGCCGGTGGAAACACGGTGCCAT
CTTCCGGGGGCAACATTGACATTGTCCCTCTTTTCTAA